RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 KRT28Q7Z3Y7 464 aa28.86■■■□□ 2.21
LSM6-207ENST00000515311 DDX17Q92841 729 aaKnown RBP28.85■■■□□ 2.21
LSM6-207ENST00000515311 SBNO1A3KN83 1393 aa28.85■■■□□ 2.21
LSM6-207ENST00000515311 ALS2Q96Q42 1657 aa28.84■■■□□ 2.21
LSM6-207ENST00000515311 COL16A1Q07092 1604 aaPredicted RBP28.83■■■□□ 2.21
LSM6-207ENST00000515311 KIF20BQ96Q89 1820 aa28.83■■■□□ 2.21
LSM6-207ENST00000515311 TTC21AQ8NDW8 1320 aa28.83■■■□□ 2.21
LSM6-207ENST00000515311 PER1O15534 1290 aaPredicted RBP28.82■■■□□ 2.2
LSM6-207ENST00000515311 XPCQ01831 940 aaPredicted RBP28.82■■■□□ 2.2
LSM6-207ENST00000515311 TTC21BQ7Z4L5 1316 aa28.82■■■□□ 2.2
LSM6-207ENST00000515311 PIK3C2AO00443 1686 aa28.81■■■□□ 2.2
LSM6-207ENST00000515311 KNSTRNQ9Y448 316 aa28.8■■■□□ 2.2
LSM6-207ENST00000515311 TNS3Q68CZ2 1445 aa28.79■■■□□ 2.2
LSM6-207ENST00000515311 CGNL1Q0VF96 1302 aa28.79■■■□□ 2.2
LSM6-207ENST00000515311 USP54Q70EL1 1684 aa28.79■■■□□ 2.2
LSM6-207ENST00000515311 ANKRD26Q9UPS8 1709 aa28.77■■■□□ 2.2
LSM6-207ENST00000515311 SPATA31A3Q5VYP0 1347 aa28.76■■■□□ 2.19
LSM6-207ENST00000515311 PAK3O75914 559 aaPredicted RBP28.76■■■□□ 2.19
LSM6-207ENST00000515311 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.76■■■□□ 2.19
LSM6-207ENST00000515311 NPC1L1Q9UHC9 1359 aa28.75■■■□□ 2.19
LSM6-207ENST00000515311 ARHGEF10O15013 1369 aa28.75■■■□□ 2.19
LSM6-207ENST00000515311 NSD2O96028 1365 aa28.75■■■□□ 2.19
LSM6-207ENST00000515311 AMER1Q5JTC6 1135 aaPredicted RBP28.73■■■□□ 2.19
LSM6-207ENST00000515311 FBXO41Q8TF61 875 aa28.73■■■□□ 2.19
LSM6-207ENST00000515311 LRRC59Q96AG4 307 aaKnown RBP28.73■■■□□ 2.19
LSM6-207ENST00000515311 MARF1Q9Y4F3 1742 aaKnown RBP28.72■■■□□ 2.19
LSM6-207ENST00000515311 USP31Q70CQ4 1352 aa28.72■■■□□ 2.19
LSM6-207ENST00000515311 MED1Q15648 1581 aaPredicted RBP28.71■■■□□ 2.19
LSM6-207ENST00000515311 FYB1O15117 783 aa28.71■■■□□ 2.19
LSM6-207ENST00000515311 ABTB2Q8N961 1025 aa28.71■■■□□ 2.19
LSM6-207ENST00000515311 COL22A1Q8NFW1 1626 aaPredicted RBP28.7■■■□□ 2.19
LSM6-207ENST00000515311 NME9Q86XW9 330 aa28.7■■■□□ 2.18
LSM6-207ENST00000515311 OVOS2A0A0J9YW53 1432 aa28.69■■■□□ 2.18
LSM6-207ENST00000515311 OVOS2Q6IE36 1432 aa28.69■■■□□ 2.18
LSM6-207ENST00000515311 SHPRHQ149N8 1683 aa28.68■■■□□ 2.18
LSM6-207ENST00000515311 CRYBG1Q9Y4K1 1723 aa28.68■■■□□ 2.18
LSM6-207ENST00000515311 HSPA1LP34931 641 aa28.66■■■□□ 2.18
LSM6-207ENST00000515311 NLRP6P59044 892 aa28.65■■■□□ 2.18
LSM6-207ENST00000515311 LMOD2Q6P5Q4 547 aa28.65■■■□□ 2.18
LSM6-207ENST00000515311 GGNBP2Q9H3C7 697 aa28.65■■■□□ 2.18
LSM6-207ENST00000515311 PNPLA6Q8IY17 1366 aa28.64■■■□□ 2.18
LSM6-207ENST00000515311 ABCA3Q99758 1704 aa28.64■■■□□ 2.18
LSM6-207ENST00000515311 NLRP13Q86W25 1043 aa28.64■■■□□ 2.18
LSM6-207ENST00000515311 PHRF1Q9P1Y6 1649 aaKnown RBP28.64■■■□□ 2.18
LSM6-207ENST00000515311 SLIT3O75094 1523 aa28.64■■■□□ 2.17
LSM6-207ENST00000515311 COG3Q96JB2 828 aa28.63■■■□□ 2.17
LSM6-207ENST00000515311 USP19O94966 1318 aa28.63■■■□□ 2.17
LSM6-207ENST00000515311 ZRANB1Q9UGI0 708 aa28.62■■■□□ 2.17
LSM6-207ENST00000515311 NUTM2GQ5VZR2 741 aa28.61■■■□□ 2.17
LSM6-207ENST00000515311 JCADQ9P266 1359 aa28.61■■■□□ 2.17
LSM6-207ENST00000515311 CC2D1BQ5T0F9 858 aaKnown RBP28.6■■■□□ 2.17
LSM6-207ENST00000515311 MORC1Q86VD1 984 aa28.56■■■□□ 2.16
LSM6-207ENST00000515311 PARD3Q8TEW0 1356 aa28.56■■■□□ 2.16
LSM6-207ENST00000515311 NFAT5O94916 1531 aa28.55■■■□□ 2.16
LSM6-207ENST00000515311 DIEXFQ68CQ4 756 aaKnown RBP28.54■■■□□ 2.16
LSM6-207ENST00000515311 KCNH5Q8NCM2 988 aa28.54■■■□□ 2.16
LSM6-207ENST00000515311 AATKQ6ZMQ8 1374 aa28.51■■■□□ 2.16
LSM6-207ENST00000515311 GCP02774 474 aa28.51■■■□□ 2.15
LSM6-207ENST00000515311 RALBP1Q15311 655 aa28.51■■■□□ 2.15
LSM6-207ENST00000515311 SPATA31A6Q5VVP1 1343 aa28.5■■■□□ 2.15
LSM6-207ENST00000515311 CNGB1Q14028 1251 aaPredicted RBP28.5■■■□□ 2.15
LSM6-207ENST00000515311 CABLES1Q8TDN4 633 aa28.5■■■□□ 2.15
LSM6-207ENST00000515311 PRKRIP1Q9H875 184 aaPredicted RBP28.5■■■□□ 2.15
LSM6-207ENST00000515311 LTN1O94822 1766 aa28.5■■■□□ 2.15
LSM6-207ENST00000515311 MAP2P11137 1827 aaKnown RBP28.48■■■□□ 2.15
LSM6-207ENST00000515311 ANP32CO43423 234 aa28.48■■■□□ 2.15
LSM6-207ENST00000515311 CPDO75976 1380 aa28.46■■■□□ 2.15
LSM6-207ENST00000515311 PLEKHG5O94827 1062 aa28.45■■■□□ 2.14
LSM6-207ENST00000515311 TNNT2P45379 298 aaPredicted RBP28.45■■■□□ 2.14
LSM6-207ENST00000515311 HAP1P54257 671 aaPredicted RBP28.45■■■□□ 2.14
LSM6-207ENST00000515311 SMG6Q86US8 1419 aaKnown RBP28.44■■■□□ 2.14
LSM6-207ENST00000515311 ABCC6O95255 1503 aa28.43■■■□□ 2.14
LSM6-207ENST00000515311 SOX12O15370 315 aa28.43■■■□□ 2.14
LSM6-207ENST00000515311 KIF24Q5T7B8 1368 aa28.41■■■□□ 2.14
LSM6-207ENST00000515311 ARHGEF25Q86VW2 580 aa28.41■■■□□ 2.14
LSM6-207ENST00000515311 MYBBP1AQ9BQG0 1328 aaKnown RBP28.41■■■□□ 2.14
LSM6-207ENST00000515311 PPP2R1AP30153 589 aa28.4■■■□□ 2.14
LSM6-207ENST00000515311 PEAK1Q9H792 1746 aa28.4■■■□□ 2.14
LSM6-207ENST00000515311 MAP3K19Q56UN5 1328 aa28.4■■■□□ 2.14
LSM6-207ENST00000515311 KIAA0232Q92628 1395 aa28.39■■■□□ 2.14
LSM6-207ENST00000515311 FBLN1P23142 703 aa28.39■■■□□ 2.14
LSM6-207ENST00000515311 POLKQ9UBT6 870 aa28.39■■■□□ 2.14
LSM6-207ENST00000515311 COL18A1P39060 1754 aa28.39■■■□□ 2.13
LSM6-207ENST00000515311 COL14A1Q05707 1796 aaKnown RBP28.39■■■□□ 2.13
LSM6-207ENST00000515311 LRP6O75581 1613 aa28.39■■■□□ 2.13
LSM6-207ENST00000515311 RTL1A6NKG5 1358 aa28.38■■■□□ 2.13
LSM6-207ENST00000515311 ZC3H6P61129 1189 aaKnown RBP28.38■■■□□ 2.13
LSM6-207ENST00000515311 RRS1Q15050 365 aaKnown RBP28.38■■■□□ 2.13
LSM6-207ENST00000515311 NUTM2BA6NNL0 878 aaPredicted RBP28.37■■■□□ 2.13
LSM6-207ENST00000515311 NUTM2EB1AL46 878 aaPredicted RBP28.37■■■□□ 2.13
LSM6-207ENST00000515311 NUTM2AQ8IVF1 878 aaPredicted RBP28.37■■■□□ 2.13
LSM6-207ENST00000515311 CDK12Q9NYV4 1490 aaPredicted RBP28.37■■■□□ 2.13
LSM6-207ENST00000515311 LMO7Q8WWI1 1683 aa28.36■■■□□ 2.13
LSM6-207ENST00000515311 PRDM11Q9NQV5 511 aa28.35■■■□□ 2.13
LSM6-207ENST00000515311 EMILIN1Q9Y6C2 1016 aa28.35■■■□□ 2.13
LSM6-207ENST00000515311 FLT4P35916 1363 aa28.35■■■□□ 2.13
LSM6-207ENST00000515311 MTHFSP49914 203 aa28.33■■■□□ 2.13
LSM6-207ENST00000515311 PLCH1Q4KWH8 1693 aa28.32■■■□□ 2.12
LSM6-207ENST00000515311 ADAMTS2O95450 1211 aa28.32■■■□□ 2.12
LSM6-207ENST00000515311 BLMP54132 1417 aaPredicted RBP28.32■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms