RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 ANKARQ7Z5J8 1434 aa11.14□□□□□ -0.63
RNF4-220ENST00000513578 RGPD8O14715 1765 aaPredicted RBP11.13□□□□□ -0.63
RNF4-220ENST00000513578 COL3A1P02461 1466 aaPredicted RBP11.13□□□□□ -0.63
RNF4-220ENST00000513578 PRR36Q9H6K5 1346 aa11.13□□□□□ -0.63
RNF4-220ENST00000513578 NWD1Q149M9 1564 aa11.13□□□□□ -0.63
RNF4-220ENST00000513578 PNPLA6Q8IY17 1366 aa11.13□□□□□ -0.63
RNF4-220ENST00000513578 ZNF521Q96K83 1311 aa11.12□□□□□ -0.63
RNF4-220ENST00000513578 NPHP4O75161 1426 aaPredicted RBP11.12□□□□□ -0.63
RNF4-220ENST00000513578 MTHFSP49914 203 aa11.12□□□□□ -0.63
RNF4-220ENST00000513578 AATKQ6ZMQ8 1374 aa11.12□□□□□ -0.63
RNF4-220ENST00000513578 NALCNQ8IZF0 1738 aa11.12□□□□□ -0.63
RNF4-220ENST00000513578 USP54Q70EL1 1684 aa11.11□□□□□ -0.63
RNF4-220ENST00000513578 SSH2Q76I76 1423 aa11.1□□□□□ -0.63
RNF4-220ENST00000513578 FKBP8Q14318 412 aa11.1□□□□□ -0.63
RNF4-220ENST00000513578 GGNBP2Q9H3C7 697 aa11.1□□□□□ -0.63
RNF4-220ENST00000513578 NKTRP30414 1462 aaKnown RBP11.09□□□□□ -0.63
RNF4-220ENST00000513578 IQSEC2Q5JU85 1478 aa11.09□□□□□ -0.63
RNF4-220ENST00000513578 LRRC7Q96NW7 1537 aa11.09□□□□□ -0.63
RNF4-220ENST00000513578 USP6P35125 1406 aa11.09□□□□□ -0.63
RNF4-220ENST00000513578 KCNA6P17658 529 aa11.08□□□□□ -0.64
RNF4-220ENST00000513578 CDK12Q9NYV4 1490 aaPredicted RBP11.07□□□□□ -0.64
RNF4-220ENST00000513578 HSPA2P54652 639 aa11.07□□□□□ -0.64
RNF4-220ENST00000513578 TRMT2AQ8IZ69 625 aaKnown RBP11.07□□□□□ -0.64
RNF4-220ENST00000513578 RUNDC1Q96C34 613 aa11.07□□□□□ -0.64
RNF4-220ENST00000513578 TTC21AQ8NDW8 1320 aa11.07□□□□□ -0.64
RNF4-220ENST00000513578 TNNT2P45379 298 aaPredicted RBP11.06□□□□□ -0.64
RNF4-220ENST00000513578 CCDC27Q2M243 656 aa11.06□□□□□ -0.64
RNF4-220ENST00000513578 OVOS2A0A0J9YW53 1432 aa11.06□□□□□ -0.64
RNF4-220ENST00000513578 OVOS2Q6IE36 1432 aa11.06□□□□□ -0.64
RNF4-220ENST00000513578 ADGRL3Q9HAR2 1447 aa11.06□□□□□ -0.64
RNF4-220ENST00000513578 ACEP12821 1306 aa11.06□□□□□ -0.64
RNF4-220ENST00000513578 TTC21BQ7Z4L5 1316 aa11.06□□□□□ -0.64
RNF4-220ENST00000513578 USP31Q70CQ4 1352 aa11.05□□□□□ -0.64
RNF4-220ENST00000513578 APAF1O14727 1248 aa11.05□□□□□ -0.64
RNF4-220ENST00000513578 GOLGA2Q08379 1002 aa11.05□□□□□ -0.64
RNF4-220ENST00000513578 PNNQ9H307 717 aaKnown RBP11.05□□□□□ -0.64
RNF4-220ENST00000513578 NCKAP5LQ9HCH0 1330 aa11.05□□□□□ -0.64
RNF4-220ENST00000513578 SLFN5Q08AF3 891 aa11.04□□□□□ -0.64
RNF4-220ENST00000513578 COG3Q96JB2 828 aa11.04□□□□□ -0.64
RNF4-220ENST00000513578 POLKQ9UBT6 870 aa11.04□□□□□ -0.64
RNF4-220ENST00000513578 MARF1Q9Y4F3 1742 aaKnown RBP11.04□□□□□ -0.64
RNF4-220ENST00000513578 NCOA3Q9Y6Q9 1424 aa11.03□□□□□ -0.64
RNF4-220ENST00000513578 DIAPH1O60610 1272 aaKnown RBP11.03□□□□□ -0.64
RNF4-220ENST00000513578 NME9Q86XW9 330 aa11.03□□□□□ -0.64
RNF4-220ENST00000513578 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.03□□□□□ -0.64
RNF4-220ENST00000513578 CDCA7LQ96GN5 454 aa11.03□□□□□ -0.64
RNF4-220ENST00000513578 PIK3C2AO00443 1686 aa11.02□□□□□ -0.64
RNF4-220ENST00000513578 DUSP27Q5VZP5 1158 aa11.02□□□□□ -0.65
RNF4-220ENST00000513578 WDR63Q8IWG1 891 aa11.02□□□□□ -0.65
RNF4-220ENST00000513578 CCDC146Q8IYE0 955 aa11.02□□□□□ -0.65
RNF4-220ENST00000513578 RCAN3Q9UKA8 241 aa11.02□□□□□ -0.65
RNF4-220ENST00000513578 E9PSI1 815 aa11.01□□□□□ -0.65
RNF4-220ENST00000513578 FCHSD2O94868 740 aa11.01□□□□□ -0.65
RNF4-220ENST00000513578 TCP11L2Q8N4U5 519 aa11.01□□□□□ -0.65
RNF4-220ENST00000513578 PLEKHF1Q96S99 279 aa11.01□□□□□ -0.65
RNF4-220ENST00000513578 PPP4R2Q9NY27 417 aa11.01□□□□□ -0.65
RNF4-220ENST00000513578 SALL2Q9Y467 1007 aaPredicted RBP11.01□□□□□ -0.65
RNF4-220ENST00000513578 U2AF1L5P0DN76 240 aaPredicted RBP11□□□□□ -0.65
RNF4-220ENST00000513578 U2AF1Q01081 240 aaKnown RBP eCLIP11□□□□□ -0.65
RNF4-220ENST00000513578 WWC1Q8IX03 1113 aa11□□□□□ -0.65
RNF4-220ENST00000513578 PELP1Q8IZL8 1130 aaKnown RBP11□□□□□ -0.65
RNF4-220ENST00000513578 KIF1AQ12756 1690 aa11□□□□□ -0.65
RNF4-220ENST00000513578 RGPD1P0DJD0 1748 aa11□□□□□ -0.65
RNF4-220ENST00000513578 KIF24Q5T7B8 1368 aa11□□□□□ -0.65
RNF4-220ENST00000513578 STRCP1A6NGW2 1772 aa10.99□□□□□ -0.65
RNF4-220ENST00000513578 IL13P35225 146 aa10.99□□□□□ -0.65
RNF4-220ENST00000513578 RRP1P56182 461 aaKnown RBP10.99□□□□□ -0.65
RNF4-220ENST00000513578 PEAK1Q9H792 1746 aa10.98□□□□□ -0.65
RNF4-220ENST00000513578 SENP3-EIF4A1A0A087X0R7 540 aa10.98□□□□□ -0.65
RNF4-220ENST00000513578 NGDNQ8NEJ9 315 aaKnown RBP10.98□□□□□ -0.65
RNF4-220ENST00000513578 ZRANB1Q9UGI0 708 aa10.98□□□□□ -0.65
RNF4-220ENST00000513578 DCCP43146 1447 aa10.98□□□□□ -0.65
RNF4-220ENST00000513578 PHF8Q9UPP1 1060 aa10.97□□□□□ -0.65
RNF4-220ENST00000513578 IL16Q14005 1332 aa10.97□□□□□ -0.65
RNF4-220ENST00000513578 PHRF1Q9P1Y6 1649 aaKnown RBP10.97□□□□□ -0.65
RNF4-220ENST00000513578 STRCQ7RTU9 1775 aa10.97□□□□□ -0.65
RNF4-220ENST00000513578 DLG5Q8TDM6 1919 aa10.97□□□□□ -0.65
RNF4-220ENST00000513578 MST1RQ04912 1400 aa10.96□□□□□ -0.65
RNF4-220ENST00000513578 NUTM2FA1L443 756 aa10.96□□□□□ -0.65
RNF4-220ENST00000513578 U2SURPO15042 1029 aaKnown RBP10.96□□□□□ -0.65
RNF4-220ENST00000513578 TMPOP42166 694 aaKnown RBP10.96□□□□□ -0.65
RNF4-220ENST00000513578 PMFBP1Q8TBY8 1022 aa10.96□□□□□ -0.65
RNF4-220ENST00000513578 RSPH6AQ9H0K4 717 aa10.96□□□□□ -0.65
RNF4-220ENST00000513578 DMRT2Q9Y5R5 561 aa10.96□□□□□ -0.65
RNF4-220ENST00000513578 EMILIN1Q9Y6C2 1016 aa10.96□□□□□ -0.65
RNF4-220ENST00000513578 TRPM3Q9HCF6 1732 aaPredicted RBP10.95□□□□□ -0.66
RNF4-220ENST00000513578 MAPK8IP3Q9UPT6 1336 aa10.95□□□□□ -0.66
RNF4-220ENST00000513578 SBNO1A3KN83 1393 aa10.94□□□□□ -0.66
RNF4-220ENST00000513578 XIRP1Q702N8 1843 aaKnown RBP10.94□□□□□ -0.66
RNF4-220ENST00000513578 C19orf44Q9H6X5 657 aa10.94□□□□□ -0.66
RNF4-220ENST00000513578 SPINK5Q9NQ38 1064 aaPredicted RBP10.94□□□□□ -0.66
RNF4-220ENST00000513578 LTN1O94822 1766 aa10.93□□□□□ -0.66
RNF4-220ENST00000513578 CT47B1P0C2W7 299 aaPredicted RBP10.93□□□□□ -0.66
RNF4-220ENST00000513578 FBLN1P23142 703 aa10.93□□□□□ -0.66
RNF4-220ENST00000513578 IRX6P78412 446 aaPredicted RBP10.93□□□□□ -0.66
RNF4-220ENST00000513578 PROSER2Q86WR7 435 aaPredicted RBP10.93□□□□□ -0.66
RNF4-220ENST00000513578 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.93□□□□□ -0.66
RNF4-220ENST00000513578 FLT4P35916 1363 aa10.92□□□□□ -0.66
RNF4-220ENST00000513578 NEFMP07197 916 aa10.92□□□□□ -0.66
RNF4-220ENST00000513578 RRS1Q15050 365 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms