RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 KCNH2Q12809 1159 aa8.29□□□□□ -1.08
NUP54-212ENST00000513248 NEUROD2Q15784 382 aa8.29□□□□□ -1.08
NUP54-212ENST00000513248 BEGAINQ9BUH8 593 aa8.29□□□□□ -1.08
NUP54-212ENST00000513248 PLEKHG3A1L390 1219 aa8.28□□□□□ -1.08
NUP54-212ENST00000513248 VARSP26640 1264 aaKnown RBP8.28□□□□□ -1.08
NUP54-212ENST00000513248 MTMR2Q13614 643 aa8.28□□□□□ -1.08
NUP54-212ENST00000513248 MOXD2PA6NHM9 499 aa8.27□□□□□ -1.09
NUP54-212ENST00000513248 BMP1P13497 986 aa8.27□□□□□ -1.09
NUP54-212ENST00000513248 ZNF511Q8NB15 262 aa8.27□□□□□ -1.09
NUP54-212ENST00000513248 PRR7Q8TB68 274 aa8.27□□□□□ -1.09
NUP54-212ENST00000513248 IRF7Q92985 503 aa8.27□□□□□ -1.09
NUP54-212ENST00000513248 FAM181BA6NEQ2 426 aa8.26□□□□□ -1.09
NUP54-212ENST00000513248 DIXDC1Q155Q3 683 aa8.26□□□□□ -1.09
NUP54-212ENST00000513248 FAM117AQ9C073 453 aa8.26□□□□□ -1.09
NUP54-212ENST00000513248 NDUFV2P19404 249 aa8.25□□□□□ -1.09
NUP54-212ENST00000513248 BAP1Q92560 729 aa8.25□□□□□ -1.09
NUP54-212ENST00000513248 TLL2Q9Y6L7 1015 aa8.25□□□□□ -1.09
NUP54-212ENST00000513248 H3BM21 787 aa8.24□□□□□ -1.09
NUP54-212ENST00000513248 LINC01559Q495D7 138 aa8.23□□□□□ -1.09
NUP54-212ENST00000513248 ZFP42Q96MM3 310 aa8.23□□□□□ -1.09
NUP54-212ENST00000513248 TBC1D2Q9BYX2 928 aa8.23□□□□□ -1.09
NUP54-212ENST00000513248 NNTQ13423 1086 aa8.22□□□□□ -1.09
NUP54-212ENST00000513248 LYPD8Q6UX82 237 aa8.22□□□□□ -1.09
NUP54-212ENST00000513248 ADH1CP00326 375 aa8.21□□□□□ -1.1
NUP54-212ENST00000513248 GMPRP36959 345 aa8.21□□□□□ -1.1
NUP54-212ENST00000513248 RSBN1LQ6PCB5 846 aaPredicted RBP8.21□□□□□ -1.1
NUP54-212ENST00000513248 CDK15Q96Q40 435 aa8.21□□□□□ -1.1
NUP54-212ENST00000513248 TIMP2P16035 220 aa8.2□□□□□ -1.1
NUP54-212ENST00000513248 LORP23490 312 aaPredicted RBP8.2□□□□□ -1.1
NUP54-212ENST00000513248 SCARF1Q14162 830 aa8.2□□□□□ -1.1
NUP54-212ENST00000513248 MRPL14Q6P1L8 145 aaKnown RBP8.2□□□□□ -1.1
NUP54-212ENST00000513248 ZSCAN1Q8NBB4 408 aa8.2□□□□□ -1.1
NUP54-212ENST00000513248 FAM174AQ8TBP5 190 aa8.2□□□□□ -1.1
NUP54-212ENST00000513248 DDRGK1Q96HY6 314 aa8.2□□□□□ -1.1
NUP54-212ENST00000513248 KLF16Q9BXK1 252 aaPredicted RBP8.2□□□□□ -1.1
NUP54-212ENST00000513248 TMEM132AQ24JP5 1023 aa8.19□□□□□ -1.1
NUP54-212ENST00000513248 PRPF38BQ5VTL8 546 aaKnown RBP8.19□□□□□ -1.1
NUP54-212ENST00000513248 GOPCQ9HD26 462 aa8.19□□□□□ -1.1
NUP54-212ENST00000513248 SPTLC1O15269 473 aa8.18□□□□□ -1.1
NUP54-212ENST00000513248 F12P00748 615 aaPredicted RBP8.18□□□□□ -1.1
NUP54-212ENST00000513248 WDR4P57081 412 aaKnown RBP8.18□□□□□ -1.1
NUP54-212ENST00000513248 ZBTB3Q9H5J0 574 aa8.18□□□□□ -1.1
NUP54-212ENST00000513248 VSIG8P0DPA2 414 aa8.17□□□□□ -1.1
NUP54-212ENST00000513248 CTHP32929 405 aa8.17□□□□□ -1.1
NUP54-212ENST00000513248 MYSM1Q5VVJ2 828 aa8.17□□□□□ -1.1
NUP54-212ENST00000513248 IL27Q8NEV9 243 aa8.17□□□□□ -1.1
NUP54-212ENST00000513248 CFAP99D6REC4 459 aa8.16□□□□□ -1.1
NUP54-212ENST00000513248 NR5A1Q13285 461 aa8.16□□□□□ -1.1
NUP54-212ENST00000513248 ERBB4Q15303 1308 aa8.16□□□□□ -1.1
NUP54-212ENST00000513248 RIC3Q7Z5B4 369 aa8.16□□□□□ -1.1
NUP54-212ENST00000513248 RSPH6AQ9H0K4 717 aa8.16□□□□□ -1.1
NUP54-212ENST00000513248 HRCP23327 699 aa8.15□□□□□ -1.1
NUP54-212ENST00000513248 VEGFBP49765 207 aa8.15□□□□□ -1.1
NUP54-212ENST00000513248 PURBQ96QR8 312 aaKnown RBP8.15□□□□□ -1.1
NUP54-212ENST00000513248 PCDHB15Q9Y5E8 787 aa8.15□□□□□ -1.1
NUP54-212ENST00000513248 SH3D19Q5HYK7 790 aa8.14□□□□□ -1.11
NUP54-212ENST00000513248 LIMD1Q9UGP4 676 aa8.14□□□□□ -1.11
NUP54-212ENST00000513248 CLK2P49760 499 aaKnown RBP8.13□□□□□ -1.11
NUP54-212ENST00000513248 TUSC1Q2TAM9 212 aa8.13□□□□□ -1.11
NUP54-212ENST00000513248 BPHLQ86WA6 291 aaPredicted RBP8.13□□□□□ -1.11
NUP54-212ENST00000513248 FOXJ1Q92949 421 aa8.13□□□□□ -1.11
NUP54-212ENST00000513248 MAP10Q9P2G4 905 aa8.13□□□□□ -1.11
NUP54-212ENST00000513248 CSPP1Q1MSJ5 1256 aa8.12□□□□□ -1.11
NUP54-212ENST00000513248 ZIC2O95409 532 aaPredicted RBP8.11□□□□□ -1.11
NUP54-212ENST00000513248 GRM5P41594 1212 aa8.11□□□□□ -1.11
NUP54-212ENST00000513248 SKIV2LQ15477 1246 aaKnown RBP8.11□□□□□ -1.11
NUP54-212ENST00000513248 ARMC2Q8NEN0 867 aa8.11□□□□□ -1.11
NUP54-212ENST00000513248 ITPKCQ96DU7 683 aa8.11□□□□□ -1.11
NUP54-212ENST00000513248 POLR3EQ9NVU0 708 aa8.11□□□□□ -1.11
NUP54-212ENST00000513248 ARID5BQ14865 1188 aa8.1□□□□□ -1.11
NUP54-212ENST00000513248 C4orf48Q5BLP8 95 aa8.1□□□□□ -1.11
NUP54-212ENST00000513248 CABLES1Q8TDN4 633 aa8.1□□□□□ -1.11
NUP54-212ENST00000513248 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.1□□□□□ -1.11
NUP54-212ENST00000513248 C1QTNF2Q9BXJ5 285 aa8.1□□□□□ -1.11
NUP54-212ENST00000513248 ZFAND3Q9H8U3 227 aa8.1□□□□□ -1.11
NUP54-212ENST00000513248 MAP4K5Q9Y4K4 846 aa8.1□□□□□ -1.11
NUP54-212ENST00000513248 MAN1A2O60476 641 aa8.09□□□□□ -1.11
NUP54-212ENST00000513248 UPP2O95045 317 aa8.09□□□□□ -1.11
NUP54-212ENST00000513248 NR3C2P08235 984 aa8.09□□□□□ -1.11
NUP54-212ENST00000513248 MEIOBQ8N635 442 aa8.09□□□□□ -1.11
NUP54-212ENST00000513248 PER1O15534 1290 aaPredicted RBP8.08□□□□□ -1.12
NUP54-212ENST00000513248 AGERQ15109 404 aa8.08□□□□□ -1.12
NUP54-212ENST00000513248 QPCTQ16769 361 aa8.08□□□□□ -1.12
NUP54-212ENST00000513248 FBXO31Q5XUX0 539 aaPredicted RBP8.08□□□□□ -1.12
NUP54-212ENST00000513248 SH3RF1Q7Z6J0 888 aa8.08□□□□□ -1.12
NUP54-212ENST00000513248 TRMT44Q8IYL2 757 aaKnown RBP8.08□□□□□ -1.12
NUP54-212ENST00000513248 SOBPA7XYQ1 873 aa8.07□□□□□ -1.12
NUP54-212ENST00000513248 LILRB3O75022 631 aa8.07□□□□□ -1.12
NUP54-212ENST00000513248 NBPF14Q5TI25 921 aa8.07□□□□□ -1.12
NUP54-212ENST00000513248 NUTM2BA6NNL0 878 aaPredicted RBP8.06□□□□□ -1.12
NUP54-212ENST00000513248 NUTM2EB1AL46 878 aaPredicted RBP8.06□□□□□ -1.12
NUP54-212ENST00000513248 NUTM2DQ5VT03 806 aaPredicted RBP8.06□□□□□ -1.12
NUP54-212ENST00000513248 NUTM2AQ8IVF1 878 aaPredicted RBP8.06□□□□□ -1.12
NUP54-212ENST00000513248 LINC00528Q8N1L1 170 aa8.06□□□□□ -1.12
NUP54-212ENST00000513248 PROCA1Q8NCQ7 364 aaPredicted RBP8.06□□□□□ -1.12
NUP54-212ENST00000513248 ATP1B4Q9UN42 357 aaPredicted RBP8.06□□□□□ -1.12
NUP54-212ENST00000513248 BMP2P12643 396 aa8.05□□□□□ -1.12
NUP54-212ENST00000513248 C6orf118Q5T5N4 469 aa8.05□□□□□ -1.12
NUP54-212ENST00000513248 PPP2R2DQ66LE6 453 aa8.05□□□□□ -1.12
NUP54-212ENST00000513248 SH3BP5LQ7L8J4 393 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms