RNA–Protein interactions for RNA: ENST00000512275.5

RFC1-213, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 841 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-213ENST00000512275 GLMNQ92990 594 aa11.59□□□□□ -0.55
RFC1-213ENST00000512275 BIVM-ERCC5R4GMW8 1640 aa11.59□□□□□ -0.55
RFC1-213ENST00000512275 WRNQ14191 1432 aaPredicted RBP eCLIP11.59□□□□□ -0.55
RFC1-213ENST00000512275 C6orf229H3BNL8 230 aa11.58□□□□□ -0.56
RFC1-213ENST00000512275 LRRN4Q8WUT4 740 aa11.58□□□□□ -0.56
RFC1-213ENST00000512275 PDS5BQ9NTI5 1447 aa11.58□□□□□ -0.56
RFC1-213ENST00000512275 PODXL2Q9NZ53 605 aa11.57□□□□□ -0.56
RFC1-213ENST00000512275 CUX1P39880 1505 aa11.56□□□□□ -0.56
RFC1-213ENST00000512275 KMT5BQ4FZB7 885 aa11.56□□□□□ -0.56
RFC1-213ENST00000512275 MORN1Q5T089 497 aa11.56□□□□□ -0.56
RFC1-213ENST00000512275 SYMPKQ92797 1274 aaKnown RBP11.56□□□□□ -0.56
RFC1-213ENST00000512275 CALR3Q96L12 384 aaKnown RBP11.56□□□□□ -0.56
RFC1-213ENST00000512275 TOP2BQ02880 1626 aa11.56□□□□□ -0.56
RFC1-213ENST00000512275 ACTN4O43707 911 aaKnown RBP11.55□□□□□ -0.56
RFC1-213ENST00000512275 PDIA4P13667 645 aaKnown RBP11.55□□□□□ -0.56
RFC1-213ENST00000512275 COPS2P61201 443 aa11.55□□□□□ -0.56
RFC1-213ENST00000512275 PPP1R18Q6NYC8 613 aa11.55□□□□□ -0.56
RFC1-213ENST00000512275 ADAMTS19Q8TE59 1207 aa11.55□□□□□ -0.56
RFC1-213ENST00000512275 PRR7Q8TB68 274 aa11.54□□□□□ -0.56
RFC1-213ENST00000512275 WASHC4Q2M389 1173 aa11.53□□□□□ -0.56
RFC1-213ENST00000512275 RETREG3Q86VR2 466 aa11.53□□□□□ -0.56
RFC1-213ENST00000512275 NKX2-3Q8TAU0 364 aa11.53□□□□□ -0.56
RFC1-213ENST00000512275 EPS8L1Q8TE68 723 aa11.53□□□□□ -0.56
RFC1-213ENST00000512275 TSC1Q92574 1164 aa11.53□□□□□ -0.56
RFC1-213ENST00000512275 DNMBPQ6XZF7 1577 aa11.53□□□□□ -0.56
RFC1-213ENST00000512275 ERCC6Q03468 1493 aa11.52□□□□□ -0.56
RFC1-213ENST00000512275 DESI1Q6ICB0 168 aa11.52□□□□□ -0.57
RFC1-213ENST00000512275 SLC27A5Q9Y2P5 690 aa11.52□□□□□ -0.57
RFC1-213ENST00000512275 URB2Q14146 1524 aaKnown RBP11.51□□□□□ -0.57
RFC1-213ENST00000512275 PRR14Q9BWN1 585 aa11.51□□□□□ -0.57
RFC1-213ENST00000512275 PER1O15534 1290 aaPredicted RBP11.5□□□□□ -0.57
RFC1-213ENST00000512275 Q3C1V9 767 aa11.5□□□□□ -0.57
RFC1-213ENST00000512275 PUS10Q3MIT2 529 aaKnown RBP11.5□□□□□ -0.57
RFC1-213ENST00000512275 PRKD2Q9BZL6 878 aa11.5□□□□□ -0.57
RFC1-213ENST00000512275 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.5□□□□□ -0.57
RFC1-213ENST00000512275 TOPBP1Q92547 1522 aa11.5□□□□□ -0.57
RFC1-213ENST00000512275 THOC2Q8NI27 1593 aaKnown RBP11.5□□□□□ -0.57
RFC1-213ENST00000512275 TRAIPQ9BWF2 469 aa11.49□□□□□ -0.57
RFC1-213ENST00000512275 PCDHB3Q9Y5E6 796 aa11.49□□□□□ -0.57
RFC1-213ENST00000512275 MRC2Q9UBG0 1479 aa11.49□□□□□ -0.57
RFC1-213ENST00000512275 ZPR1O75312 459 aa11.48□□□□□ -0.57
RFC1-213ENST00000512275 PPP1R15AO75807 674 aaPredicted RBP11.48□□□□□ -0.57
RFC1-213ENST00000512275 HDGFL1Q5TGJ6 251 aa11.48□□□□□ -0.57
RFC1-213ENST00000512275 FGD5Q6ZNL6 1462 aa11.47□□□□□ -0.57
RFC1-213ENST00000512275 VAC14Q08AM6 782 aa11.47□□□□□ -0.57
RFC1-213ENST00000512275 Q6ZNB5 142 aa11.47□□□□□ -0.57
RFC1-213ENST00000512275 ALG2Q9H553 416 aa11.47□□□□□ -0.57
RFC1-213ENST00000512275 NR6A1Q15406 480 aa11.46□□□□□ -0.57
RFC1-213ENST00000512275 BLOC1S3Q6QNY0 202 aa11.46□□□□□ -0.57
RFC1-213ENST00000512275 SALL2Q9Y467 1007 aaPredicted RBP11.46□□□□□ -0.57
RFC1-213ENST00000512275 LYPD8Q6UX82 237 aa11.45□□□□□ -0.58
RFC1-213ENST00000512275 RNF19BQ6ZMZ0 732 aa11.45□□□□□ -0.58
RFC1-213ENST00000512275 RETREG2Q8NC44 543 aa11.45□□□□□ -0.58
RFC1-213ENST00000512275 V9GY48 417 aaPredicted RBP11.45□□□□□ -0.58
RFC1-213ENST00000512275 WDR62O43379 1518 aa11.45□□□□□ -0.58
RFC1-213ENST00000512275 GGCXP38435 758 aa11.44□□□□□ -0.58
RFC1-213ENST00000512275 LAPTM4AQ15012 233 aa11.43□□□□□ -0.58
RFC1-213ENST00000512275 CFAP70Q5T0N1 1121 aa11.43□□□□□ -0.58
RFC1-213ENST00000512275 BRICD5Q6PL45 260 aa11.43□□□□□ -0.58
RFC1-213ENST00000512275 SOX11P35716 441 aa11.42□□□□□ -0.58
RFC1-213ENST00000512275 THAP11Q96EK4 314 aa11.42□□□□□ -0.58
RFC1-213ENST00000512275 USB1Q9BQ65 265 aaKnown RBP11.42□□□□□ -0.58
RFC1-213ENST00000512275 POLA1P09884 1462 aaPredicted RBP11.42□□□□□ -0.58
RFC1-213ENST00000512275 WDR97A6NE52 1622 aa11.42□□□□□ -0.58
RFC1-213ENST00000512275 GFRA3O60609 400 aa11.41□□□□□ -0.58
RFC1-213ENST00000512275 SRPK2P78362 688 aaKnown RBP11.41□□□□□ -0.58
RFC1-213ENST00000512275 LCE2BO14633 110 aa11.4□□□□□ -0.58
RFC1-213ENST00000512275 PBXIP1Q96AQ6 731 aa11.4□□□□□ -0.58
RFC1-213ENST00000512275 UCN2Q96RP3 112 aa11.4□□□□□ -0.58
RFC1-213ENST00000512275 PPP1R12CQ9BZL4 782 aa11.4□□□□□ -0.58
RFC1-213ENST00000512275 TLL1O43897 1013 aa11.39□□□□□ -0.59
RFC1-213ENST00000512275 SOGA1O94964 1423 aa11.39□□□□□ -0.59
RFC1-213ENST00000512275 RAD54L2Q9Y4B4 1467 aa11.38□□□□□ -0.59
RFC1-213ENST00000512275 ZBTB7CA1YPR0 619 aa11.38□□□□□ -0.59
RFC1-213ENST00000512275 F12P00748 615 aaPredicted RBP11.38□□□□□ -0.59
RFC1-213ENST00000512275 SCUBE3Q8IX30 993 aa11.38□□□□□ -0.59
RFC1-213ENST00000512275 FAM9AQ8IZU1 332 aaPredicted RBP11.38□□□□□ -0.59
RFC1-213ENST00000512275 RUSC2Q8N2Y8 1516 aa11.38□□□□□ -0.59
RFC1-213ENST00000512275 TARBP1Q13395 1621 aaKnown RBP11.36□□□□□ -0.59
RFC1-213ENST00000512275 PNMA1Q8ND90 353 aa11.36□□□□□ -0.59
RFC1-213ENST00000512275 PALM3A6NDB9 673 aaPredicted RBP11.35□□□□□ -0.59
RFC1-213ENST00000512275 RNF223E7ERA6 249 aa11.35□□□□□ -0.59
RFC1-213ENST00000512275 NR1I2O75469 434 aa11.35□□□□□ -0.59
RFC1-213ENST00000512275 FMNL1O95466 1100 aaPredicted RBP11.35□□□□□ -0.59
RFC1-213ENST00000512275 JUNDP17535 347 aa11.35□□□□□ -0.59
RFC1-213ENST00000512275 PTPRNQ16849 979 aa11.35□□□□□ -0.59
RFC1-213ENST00000512275 KCTD17Q8N5Z5 321 aa11.35□□□□□ -0.59
RFC1-213ENST00000512275 CUX2O14529 1486 aa11.34□□□□□ -0.59
RFC1-213ENST00000512275 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.34□□□□□ -0.59
RFC1-213ENST00000512275 NRG2O14511 850 aaPredicted RBP11.34□□□□□ -0.59
RFC1-213ENST00000512275 NR1H3Q13133 447 aa11.34□□□□□ -0.59
RFC1-213ENST00000512275 FKBPLQ9UIM3 349 aa11.34□□□□□ -0.59
RFC1-213ENST00000512275 ABCA10Q8WWZ4 1543 aa11.33□□□□□ -0.6
RFC1-213ENST00000512275 ACIN1Q9UKV3 1341 aaKnown RBP11.33□□□□□ -0.6
RFC1-213ENST00000512275 ZC3H4Q9UPT8 1303 aaKnown RBP11.33□□□□□ -0.6
RFC1-213ENST00000512275 FBXO45P0C2W1 286 aa11.32□□□□□ -0.6
RFC1-213ENST00000512275 MSS51Q4VC12 460 aa11.32□□□□□ -0.6
RFC1-213ENST00000512275 MAP10Q9P2G4 905 aa11.32□□□□□ -0.6
RFC1-213ENST00000512275 ABCA5Q8WWZ7 1642 aa11.31□□□□□ -0.6
RFC1-213ENST00000512275 PBRM1Q86U86 1689 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms