RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 DCCP43146 1447 aa21.27■■□□□ 1
SQSTM1-213ENST00000510187 CPSF1Q10570 1443 aaKnown RBP21.27■■□□□ 1
SQSTM1-213ENST00000510187 PMFBP1Q8TBY8 1022 aa21.26■□□□□ 0.99
SQSTM1-213ENST00000510187 ITSN1Q15811 1721 aa21.26■□□□□ 0.99
SQSTM1-213ENST00000510187 ACEP12821 1306 aa21.26■□□□□ 0.99
SQSTM1-213ENST00000510187 RGPD8O14715 1765 aaPredicted RBP21.25■□□□□ 0.99
SQSTM1-213ENST00000510187 CADPS2Q86UW7 1296 aa21.25■□□□□ 0.99
SQSTM1-213ENST00000510187 ZNF692Q9BU19 519 aaPredicted RBP21.25■□□□□ 0.99
SQSTM1-213ENST00000510187 CGNL1Q0VF96 1302 aa21.24■□□□□ 0.99
SQSTM1-213ENST00000510187 XIRP1Q702N8 1843 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-213ENST00000510187 NPC1L1Q9UHC9 1359 aa21.24■□□□□ 0.99
SQSTM1-213ENST00000510187 ESCO1Q5FWF5 840 aa21.24■□□□□ 0.99
SQSTM1-213ENST00000510187 NGDNQ8NEJ9 315 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-213ENST00000510187 CCDC136Q96JN2 1154 aa21.24■□□□□ 0.99
SQSTM1-213ENST00000510187 MSH5O43196 834 aa21.23■□□□□ 0.99
SQSTM1-213ENST00000510187 PHF8Q9UPP1 1060 aa21.22■□□□□ 0.99
SQSTM1-213ENST00000510187 RRP1P56182 461 aaKnown RBP21.21■□□□□ 0.99
SQSTM1-213ENST00000510187 POLR3AO14802 1390 aaPredicted RBP21.21■□□□□ 0.99
SQSTM1-213ENST00000510187 C1orf167Q5SNV9 1468 aa21.21■□□□□ 0.99
SQSTM1-213ENST00000510187 MST1RQ04912 1400 aa21.2■□□□□ 0.98
SQSTM1-213ENST00000510187 EDC4Q6P2E9 1401 aaKnown RBP21.2■□□□□ 0.98
SQSTM1-213ENST00000510187 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.2■□□□□ 0.98
SQSTM1-213ENST00000510187 ORAI2Q96SN7 254 aa21.2■□□□□ 0.98
SQSTM1-213ENST00000510187 LTBP4Q8N2S1 1624 aa21.2■□□□□ 0.98
SQSTM1-213ENST00000510187 AKAP12Q02952 1782 aa21.19■□□□□ 0.98
SQSTM1-213ENST00000510187 RCAN3Q9UKA8 241 aa21.18■□□□□ 0.98
SQSTM1-213ENST00000510187 USP6P35125 1406 aa21.18■□□□□ 0.98
SQSTM1-213ENST00000510187 MON2Q7Z3U7 1717 aa21.18■□□□□ 0.98
SQSTM1-213ENST00000510187 NSD2O96028 1365 aa21.17■□□□□ 0.98
SQSTM1-213ENST00000510187 FYB1O15117 783 aa21.16■□□□□ 0.98
SQSTM1-213ENST00000510187 GGNBP2Q9H3C7 697 aa21.15■□□□□ 0.98
SQSTM1-213ENST00000510187 MORC1Q86VD1 984 aa21.15■□□□□ 0.98
SQSTM1-213ENST00000510187 TTC21BQ7Z4L5 1316 aa21.15■□□□□ 0.98
SQSTM1-213ENST00000510187 FOXO3O43524 673 aa21.12■□□□□ 0.97
SQSTM1-213ENST00000510187 PSME1Q06323 249 aa21.12■□□□□ 0.97
SQSTM1-213ENST00000510187 NME9Q86XW9 330 aa21.12■□□□□ 0.97
SQSTM1-213ENST00000510187 SLAIN2Q9P270 581 aa21.12■□□□□ 0.97
SQSTM1-213ENST00000510187 SSH2Q76I76 1423 aa21.12■□□□□ 0.97
SQSTM1-213ENST00000510187 ERICH6Q7L0X2 663 aa21.12■□□□□ 0.97
SQSTM1-213ENST00000510187 NRKQ7Z2Y5 1582 aa21.12■□□□□ 0.97
SQSTM1-213ENST00000510187 KIF1AQ12756 1690 aa21.1■□□□□ 0.97
SQSTM1-213ENST00000510187 TTC21AQ8NDW8 1320 aa21.1■□□□□ 0.97
SQSTM1-213ENST00000510187 KIF20BQ96Q89 1820 aa21.1■□□□□ 0.97
SQSTM1-213ENST00000510187 PPP2R1AP30153 589 aa21.09■□□□□ 0.97
SQSTM1-213ENST00000510187 TNNT2P45379 298 aaPredicted RBP21.09■□□□□ 0.97
SQSTM1-213ENST00000510187 PAK3O75914 559 aaPredicted RBP21.08■□□□□ 0.97
SQSTM1-213ENST00000510187 SENP3-EIF4A1A0A087X0R7 540 aa21.07■□□□□ 0.96
SQSTM1-213ENST00000510187 XPCQ01831 940 aaPredicted RBP21.07■□□□□ 0.96
SQSTM1-213ENST00000510187 BRINP3Q76B58 766 aa21.07■□□□□ 0.96
SQSTM1-213ENST00000510187 COG3Q96JB2 828 aa21.07■□□□□ 0.96
SQSTM1-213ENST00000510187 ZRANB1Q9UGI0 708 aa21.07■□□□□ 0.96
SQSTM1-213ENST00000510187 ANKRD26Q9UPS8 1709 aa21.05■□□□□ 0.96
SQSTM1-213ENST00000510187 KRT28Q7Z3Y7 464 aa21.05■□□□□ 0.96
SQSTM1-213ENST00000510187 NPHP3Q7Z494 1330 aa21.05■□□□□ 0.96
SQSTM1-213ENST00000510187 DDX17Q92841 729 aaKnown RBP21.04■□□□□ 0.96
SQSTM1-213ENST00000510187 ABTB2Q8N961 1025 aa21.04■□□□□ 0.96
SQSTM1-213ENST00000510187 EXOC6Q8TAG9 804 aa21.04■□□□□ 0.96
SQSTM1-213ENST00000510187 CDCA7LQ96GN5 454 aa21.02■□□□□ 0.96
SQSTM1-213ENST00000510187 WDR43Q15061 677 aaKnown RBP eCLIP21.01■□□□□ 0.95
SQSTM1-213ENST00000510187 SALL2Q9Y467 1007 aaPredicted RBP21.01■□□□□ 0.95
SQSTM1-213ENST00000510187 OVOS2A0A0J9YW53 1432 aa21.01■□□□□ 0.95
SQSTM1-213ENST00000510187 OVOS2Q6IE36 1432 aa21.01■□□□□ 0.95
SQSTM1-213ENST00000510187 NLRP6P59044 892 aa21.01■□□□□ 0.95
SQSTM1-213ENST00000510187 NUTM2GQ5VZR2 741 aa21.01■□□□□ 0.95
SQSTM1-213ENST00000510187 ADAMTS8Q9UP79 889 aa21.01■□□□□ 0.95
SQSTM1-213ENST00000510187 PIK3C2AO00443 1686 aa21■□□□□ 0.95
SQSTM1-213ENST00000510187 USP31Q70CQ4 1352 aa21■□□□□ 0.95
SQSTM1-213ENST00000510187 TCERG1O14776 1098 aaKnown RBP21■□□□□ 0.95
SQSTM1-213ENST00000510187 MTHFSP49914 203 aa20.98■□□□□ 0.95
SQSTM1-213ENST00000510187 LMOD2Q6P5Q4 547 aa20.98■□□□□ 0.95
SQSTM1-213ENST00000510187 ZNF521Q96K83 1311 aa20.97■□□□□ 0.95
SQSTM1-213ENST00000510187 FBLN1P23142 703 aa20.97■□□□□ 0.95
SQSTM1-213ENST00000510187 ANP32AP39687 249 aaKnown RBP20.97■□□□□ 0.95
SQSTM1-213ENST00000510187 TRPM3Q9HCF6 1732 aaPredicted RBP20.97■□□□□ 0.95
SQSTM1-213ENST00000510187 PXDNQ92626 1479 aa20.96■□□□□ 0.95
SQSTM1-213ENST00000510187 TOM1O60784 492 aa20.96■□□□□ 0.95
SQSTM1-213ENST00000510187 MS4A1P11836 297 aa20.96■□□□□ 0.95
SQSTM1-213ENST00000510187 SBNO1A3KN83 1393 aa20.96■□□□□ 0.95
SQSTM1-213ENST00000510187 NOP58Q9Y2X3 529 aaKnown RBP20.95■□□□□ 0.94
SQSTM1-213ENST00000510187 AATKQ6ZMQ8 1374 aa20.95■□□□□ 0.94
SQSTM1-213ENST00000510187 SOX12O15370 315 aa20.95■□□□□ 0.94
SQSTM1-213ENST00000510187 NGEFQ8N5V2 710 aa20.93■□□□□ 0.94
SQSTM1-213ENST00000510187 POLKQ9UBT6 870 aa20.93■□□□□ 0.94
SQSTM1-213ENST00000510187 SOS2Q07890 1332 aaPredicted RBP20.93■□□□□ 0.94
SQSTM1-213ENST00000510187 PPM1GO15355 546 aaPredicted RBP20.92■□□□□ 0.94
SQSTM1-213ENST00000510187 RRS1Q15050 365 aaKnown RBP20.92■□□□□ 0.94
SQSTM1-213ENST00000510187 CERKQ8TCT0 537 aa20.92■□□□□ 0.94
SQSTM1-213ENST00000510187 CFAP53Q96M91 514 aa20.92■□□□□ 0.94
SQSTM1-213ENST00000510187 IQSEC2Q5JU85 1478 aa20.92■□□□□ 0.94
SQSTM1-213ENST00000510187 ROBO1Q9Y6N7 1651 aa20.92■□□□□ 0.94
SQSTM1-213ENST00000510187 TNS3Q68CZ2 1445 aa20.92■□□□□ 0.94
SQSTM1-213ENST00000510187 USP54Q70EL1 1684 aa20.91■□□□□ 0.94
SQSTM1-213ENST00000510187 SPATA31A3Q5VYP0 1347 aa20.91■□□□□ 0.94
SQSTM1-213ENST00000510187 UBAP1LF5GYI3 381 aa20.91■□□□□ 0.94
SQSTM1-213ENST00000510187 EMILIN1Q9Y6C2 1016 aa20.91■□□□□ 0.94
SQSTM1-213ENST00000510187 GOLGA2Q08379 1002 aa20.9■□□□□ 0.94
SQSTM1-213ENST00000510187 DUSP27Q5VZP5 1158 aa20.9■□□□□ 0.94
SQSTM1-213ENST00000510187 IPO9Q96P70 1041 aaKnown RBP20.9■□□□□ 0.94
SQSTM1-213ENST00000510187 MARF1Q9Y4F3 1742 aaKnown RBP20.9■□□□□ 0.94
SQSTM1-213ENST00000510187 ALS2Q96Q42 1657 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 1131.4 ms