RNA–Protein interactions for RNA: ENST00000509333.5

PDLIM5-212, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 743 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-212ENST00000509333 TESK2Q96S53 571 aa22.83■■□□□ 1.25
PDLIM5-212ENST00000509333 SBNO2Q9Y2G9 1366 aa22.83■■□□□ 1.25
PDLIM5-212ENST00000509333 BCL9LQ86UU0 1499 aa22.83■■□□□ 1.25
PDLIM5-212ENST00000509333 QRICH2Q9H0J4 1663 aa22.83■■□□□ 1.24
PDLIM5-212ENST00000509333 TRPM3Q9HCF6 1732 aaPredicted RBP22.82■■□□□ 1.24
PDLIM5-212ENST00000509333 NUTM2GQ5VZR2 741 aa22.82■■□□□ 1.24
PDLIM5-212ENST00000509333 UNC5CLQ8IV45 518 aa22.82■■□□□ 1.24
PDLIM5-212ENST00000509333 ZNF692Q9BU19 519 aaPredicted RBP22.82■■□□□ 1.24
PDLIM5-212ENST00000509333 ABTB2Q8N961 1025 aa22.81■■□□□ 1.24
PDLIM5-212ENST00000509333 PUS7Q96PZ0 661 aaKnown RBP22.8■■□□□ 1.24
PDLIM5-212ENST00000509333 ITSN1Q15811 1721 aa22.79■■□□□ 1.24
PDLIM5-212ENST00000509333 SLIT2O94813 1529 aa22.77■■□□□ 1.24
PDLIM5-212ENST00000509333 SLC24A1O60721 1099 aa22.77■■□□□ 1.24
PDLIM5-212ENST00000509333 GJD4Q96KN9 370 aaPredicted RBP22.77■■□□□ 1.24
PDLIM5-212ENST00000509333 TOPAZ1Q8N9V7 1692 aa22.77■■□□□ 1.24
PDLIM5-212ENST00000509333 ALS2Q96Q42 1657 aa22.77■■□□□ 1.24
PDLIM5-212ENST00000509333 BRD4O60885 1362 aaPredicted RBP22.76■■□□□ 1.23
PDLIM5-212ENST00000509333 ATRNO75882 1429 aa22.76■■□□□ 1.23
PDLIM5-212ENST00000509333 ATAD2Q6PL18 1390 aa22.76■■□□□ 1.23
PDLIM5-212ENST00000509333 NLRP13Q86W25 1043 aa22.75■■□□□ 1.23
PDLIM5-212ENST00000509333 SLC12A5Q9H2X9 1139 aa22.75■■□□□ 1.23
PDLIM5-212ENST00000509333 SSH2Q76I76 1423 aa22.74■■□□□ 1.23
PDLIM5-212ENST00000509333 MARF1Q9Y4F3 1742 aaKnown RBP22.73■■□□□ 1.23
PDLIM5-212ENST00000509333 USP6P35125 1406 aa22.73■■□□□ 1.23
PDLIM5-212ENST00000509333 CDK12Q9NYV4 1490 aaPredicted RBP22.73■■□□□ 1.23
PDLIM5-212ENST00000509333 NLRP6P59044 892 aa22.72■■□□□ 1.23
PDLIM5-212ENST00000509333 ZC3H6P61129 1189 aaKnown RBP22.72■■□□□ 1.23
PDLIM5-212ENST00000509333 VPS72Q15906 364 aa22.72■■□□□ 1.23
PDLIM5-212ENST00000509333 BTG4Q9NY30 223 aa22.72■■□□□ 1.23
PDLIM5-212ENST00000509333 TTC21BQ7Z4L5 1316 aa22.72■■□□□ 1.23
PDLIM5-212ENST00000509333 GCP02774 474 aa22.71■■□□□ 1.23
PDLIM5-212ENST00000509333 TMC1Q8TDI8 760 aa22.71■■□□□ 1.23
PDLIM5-212ENST00000509333 CPSF1Q10570 1443 aaKnown RBP22.71■■□□□ 1.23
PDLIM5-212ENST00000509333 PRDM11Q9NQV5 511 aa22.7■■□□□ 1.22
PDLIM5-212ENST00000509333 USP19O94966 1318 aa22.69■■□□□ 1.22
PDLIM5-212ENST00000509333 USP47Q96K76 1375 aa22.68■■□□□ 1.22
PDLIM5-212ENST00000509333 ONECUT3O60422 494 aaPredicted RBP22.68■■□□□ 1.22
PDLIM5-212ENST00000509333 CHRNA2Q15822 529 aa22.68■■□□□ 1.22
PDLIM5-212ENST00000509333 KIAA0232Q92628 1395 aa22.67■■□□□ 1.22
PDLIM5-212ENST00000509333 KTN1Q86UP2 1357 aaKnown RBP22.66■■□□□ 1.22
PDLIM5-212ENST00000509333 TMF1P82094 1093 aa22.65■■□□□ 1.22
PDLIM5-212ENST00000509333 UPF1Q92900 1129 aaKnown RBP eCLIP22.65■■□□□ 1.22
PDLIM5-212ENST00000509333 RGS12O14924 1447 aa22.65■■□□□ 1.22
PDLIM5-212ENST00000509333 TTC21AQ8NDW8 1320 aa22.64■■□□□ 1.22
PDLIM5-212ENST00000509333 HDGFL2Q7Z4V5 671 aaPredicted RBP22.64■■□□□ 1.21
PDLIM5-212ENST00000509333 TERF2IPQ9NYB0 399 aa22.64■■□□□ 1.21
PDLIM5-212ENST00000509333 ABCA3Q99758 1704 aa22.63■■□□□ 1.21
PDLIM5-212ENST00000509333 CCDC9Q9Y3X0 531 aaKnown RBP22.63■■□□□ 1.21
PDLIM5-212ENST00000509333 CD163L1Q9NR16 1453 aa22.62■■□□□ 1.21
PDLIM5-212ENST00000509333 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.62■■□□□ 1.21
PDLIM5-212ENST00000509333 CPDO75976 1380 aa22.62■■□□□ 1.21
PDLIM5-212ENST00000509333 ZRANB1Q9UGI0 708 aa22.61■■□□□ 1.21
PDLIM5-212ENST00000509333 CRYBG1Q9Y4K1 1723 aa22.61■■□□□ 1.21
PDLIM5-212ENST00000509333 SEPT12Q8IYM1 358 aa22.6■■□□□ 1.21
PDLIM5-212ENST00000509333 EVA1CP58658 441 aa22.59■■□□□ 1.21
PDLIM5-212ENST00000509333 SPATA31A5Q5VU36 1347 aa22.58■■□□□ 1.21
PDLIM5-212ENST00000509333 SPATA31A7Q8IWB4 1347 aa22.58■■□□□ 1.21
PDLIM5-212ENST00000509333 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.58■■□□□ 1.21
PDLIM5-212ENST00000509333 NWD2Q9ULI1 1742 aa22.58■■□□□ 1.21
PDLIM5-212ENST00000509333 CDCA8Q53HL2 280 aa22.58■■□□□ 1.21
PDLIM5-212ENST00000509333 NME9Q86XW9 330 aa22.58■■□□□ 1.21
PDLIM5-212ENST00000509333 COL14A1Q05707 1796 aaKnown RBP22.58■■□□□ 1.2
PDLIM5-212ENST00000509333 ARHGEF25Q86VW2 580 aa22.57■■□□□ 1.2
PDLIM5-212ENST00000509333 KCNH5Q8NCM2 988 aa22.57■■□□□ 1.2
PDLIM5-212ENST00000509333 STRN4Q9NRL3 753 aa22.57■■□□□ 1.2
PDLIM5-212ENST00000509333 GLI3P10071 1580 aa22.57■■□□□ 1.2
PDLIM5-212ENST00000509333 USP31Q70CQ4 1352 aa22.56■■□□□ 1.2
PDLIM5-212ENST00000509333 AKAP12Q02952 1782 aa22.55■■□□□ 1.2
PDLIM5-212ENST00000509333 A0A1W2PP64 1363 aa22.55■■□□□ 1.2
PDLIM5-212ENST00000509333 FAM98CQ17RN3 349 aaKnown RBP22.55■■□□□ 1.2
PDLIM5-212ENST00000509333 PLCH1Q4KWH8 1693 aa22.55■■□□□ 1.2
PDLIM5-212ENST00000509333 NINLQ9Y2I6 1382 aa22.54■■□□□ 1.2
PDLIM5-212ENST00000509333 EIF4G2P78344 907 aaKnown RBP eCLIP22.54■■□□□ 1.2
PDLIM5-212ENST00000509333 AXIN2Q9Y2T1 843 aa22.54■■□□□ 1.2
PDLIM5-212ENST00000509333 SPATA31A1Q5TZJ5 1347 aa22.54■■□□□ 1.2
PDLIM5-212ENST00000509333 CAMTA1Q9Y6Y1 1673 aa22.53■■□□□ 1.2
PDLIM5-212ENST00000509333 HSPA5P11021 654 aaKnown RBP22.53■■□□□ 1.2
PDLIM5-212ENST00000509333 LARP1Q6PKG0 1096 aaKnown RBP22.53■■□□□ 1.2
PDLIM5-212ENST00000509333 PHRF1Q9P1Y6 1649 aaKnown RBP22.53■■□□□ 1.2
PDLIM5-212ENST00000509333 AATKQ6ZMQ8 1374 aa22.52■■□□□ 1.2
PDLIM5-212ENST00000509333 ZBTB7CA1YPR0 619 aa22.52■■□□□ 1.2
PDLIM5-212ENST00000509333 SLIT3O75094 1523 aa22.52■■□□□ 1.19
PDLIM5-212ENST00000509333 EDC4Q6P2E9 1401 aaKnown RBP22.51■■□□□ 1.19
PDLIM5-212ENST00000509333 SOX12O15370 315 aa22.51■■□□□ 1.19
PDLIM5-212ENST00000509333 PIK3C2AO00443 1686 aa22.51■■□□□ 1.19
PDLIM5-212ENST00000509333 NRKQ7Z2Y5 1582 aa22.5■■□□□ 1.19
PDLIM5-212ENST00000509333 NRAPQ86VF7 1730 aa22.49■■□□□ 1.19
PDLIM5-212ENST00000509333 KRT27Q7Z3Y8 459 aa22.49■■□□□ 1.19
PDLIM5-212ENST00000509333 USP35Q9P2H5 1018 aa22.48■■□□□ 1.19
PDLIM5-212ENST00000509333 ANKRD36BQ8N2N9 1353 aa22.48■■□□□ 1.19
PDLIM5-212ENST00000509333 FYB1O15117 783 aa22.47■■□□□ 1.19
PDLIM5-212ENST00000509333 BARGINQ6ZT62 677 aa22.47■■□□□ 1.19
PDLIM5-212ENST00000509333 CARD14Q9BXL6 1004 aa22.47■■□□□ 1.19
PDLIM5-212ENST00000509333 MON2Q7Z3U7 1717 aa22.47■■□□□ 1.19
PDLIM5-212ENST00000509333 TCP11L2Q8N4U5 519 aa22.46■■□□□ 1.19
PDLIM5-212ENST00000509333 CCDC125Q86Z20 511 aa22.45■■□□□ 1.18
PDLIM5-212ENST00000509333 A0A0G2JS52 829 aa22.44■■□□□ 1.18
PDLIM5-212ENST00000509333 MYT1Q01538 1121 aa22.44■■□□□ 1.18
PDLIM5-212ENST00000509333 THRAP3Q9Y2W1 955 aaKnown RBP22.44■■□□□ 1.18
PDLIM5-212ENST00000509333 LMO7Q8WWI1 1683 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms