RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 PHRF1Q9P1Y6 1649 aaKnown RBP18.85■□□□□ 0.61
HMGCS1-205ENST00000508319 POLR3AO14802 1390 aaPredicted RBP18.84■□□□□ 0.61
HMGCS1-205ENST00000508319 VPS72Q15906 364 aa18.84■□□□□ 0.61
HMGCS1-205ENST00000508319 CDK19Q9BWU1 502 aa18.84■□□□□ 0.61
HMGCS1-205ENST00000508319 TRPM1Q7Z4N2 1603 aa18.84■□□□□ 0.61
HMGCS1-205ENST00000508319 FAM83GA6ND36 823 aa18.83■□□□□ 0.6
HMGCS1-205ENST00000508319 L3MBTL2Q969R5 705 aa18.81■□□□□ 0.6
HMGCS1-205ENST00000508319 CENPJQ9HC77 1338 aaPredicted RBP18.8■□□□□ 0.6
HMGCS1-205ENST00000508319 PAK3O75914 559 aaPredicted RBP18.8■□□□□ 0.6
HMGCS1-205ENST00000508319 SIN3AQ96ST3 1273 aa18.79■□□□□ 0.6
HMGCS1-205ENST00000508319 CCDC61Q9Y6R9 512 aa18.79■□□□□ 0.6
HMGCS1-205ENST00000508319 SRCAPQ6ZRS2 3230 aa18.79■□□□□ 0.6
HMGCS1-205ENST00000508319 NRKQ7Z2Y5 1582 aa18.78■□□□□ 0.6
HMGCS1-205ENST00000508319 SEPT12Q8IYM1 358 aa18.78■□□□□ 0.6
HMGCS1-205ENST00000508319 BTG4Q9NY30 223 aa18.78■□□□□ 0.6
HMGCS1-205ENST00000508319 ACEP12821 1306 aa18.77■□□□□ 0.6
HMGCS1-205ENST00000508319 PLEKHG3A1L390 1219 aa18.77■□□□□ 0.6
HMGCS1-205ENST00000508319 ONECUT3O60422 494 aaPredicted RBP18.77■□□□□ 0.6
HMGCS1-205ENST00000508319 CCDC9Q9Y3X0 531 aaKnown RBP18.77■□□□□ 0.6
HMGCS1-205ENST00000508319 PPIP5K1Q6PFW1 1433 aa18.76■□□□□ 0.59
HMGCS1-205ENST00000508319 NBPF8Q3BBV2 869 aa18.76■□□□□ 0.59
HMGCS1-205ENST00000508319 BLMP54132 1417 aaPredicted RBP18.75■□□□□ 0.59
HMGCS1-205ENST00000508319 CCDC125Q86Z20 511 aa18.75■□□□□ 0.59
HMGCS1-205ENST00000508319 PIAS4Q8N2W9 510 aaPredicted RBP18.75■□□□□ 0.59
HMGCS1-205ENST00000508319 KIAA0232Q92628 1395 aa18.75■□□□□ 0.59
HMGCS1-205ENST00000508319 THSD7AQ9UPZ6 1657 aa18.74■□□□□ 0.59
HMGCS1-205ENST00000508319 PRDM11Q9NQV5 511 aa18.74■□□□□ 0.59
HMGCS1-205ENST00000508319 SRPK2P78362 688 aaKnown RBP18.73■□□□□ 0.59
HMGCS1-205ENST00000508319 CABP2Q9NPB3 220 aa18.73■□□□□ 0.59
HMGCS1-205ENST00000508319 NEUROD1Q13562 356 aa18.72■□□□□ 0.59
HMGCS1-205ENST00000508319 SPATA31A5Q5VU36 1347 aa18.72■□□□□ 0.59
HMGCS1-205ENST00000508319 SPATA31A7Q8IWB4 1347 aa18.72■□□□□ 0.59
HMGCS1-205ENST00000508319 ROCK2O75116 1388 aaKnown RBP18.71■□□□□ 0.59
HMGCS1-205ENST00000508319 LMO7Q8WWI1 1683 aa18.71■□□□□ 0.59
HMGCS1-205ENST00000508319 FAM98CQ17RN3 349 aaKnown RBP18.71■□□□□ 0.59
HMGCS1-205ENST00000508319 NUTM2GQ5VZR2 741 aa18.71■□□□□ 0.59
HMGCS1-205ENST00000508319 USP19O94966 1318 aa18.71■□□□□ 0.59
HMGCS1-205ENST00000508319 KRT27Q7Z3Y8 459 aa18.7■□□□□ 0.58
HMGCS1-205ENST00000508319 CHRNA2Q15822 529 aa18.69■□□□□ 0.58
HMGCS1-205ENST00000508319 USP6P35125 1406 aa18.68■□□□□ 0.58
HMGCS1-205ENST00000508319 ZC3H6P61129 1189 aaKnown RBP18.68■□□□□ 0.58
HMGCS1-205ENST00000508319 ABTB2Q8N961 1025 aa18.68■□□□□ 0.58
HMGCS1-205ENST00000508319 BRD4O60885 1362 aaPredicted RBP18.68■□□□□ 0.58
HMGCS1-205ENST00000508319 PIK3C2AO00443 1686 aa18.67■□□□□ 0.58
HMGCS1-205ENST00000508319 A0A0G2JS52 829 aa18.67■□□□□ 0.58
HMGCS1-205ENST00000508319 MYT1Q01538 1121 aa18.67■□□□□ 0.58
HMGCS1-205ENST00000508319 CPDO75976 1380 aa18.67■□□□□ 0.58
HMGCS1-205ENST00000508319 CAMTA1Q9Y6Y1 1673 aa18.66■□□□□ 0.58
HMGCS1-205ENST00000508319 SSH2Q76I76 1423 aa18.66■□□□□ 0.58
HMGCS1-205ENST00000508319 AKAP12Q02952 1782 aa18.65■□□□□ 0.58
HMGCS1-205ENST00000508319 SLIT3O75094 1523 aa18.65■□□□□ 0.58
HMGCS1-205ENST00000508319 CABP1Q9NZU7 370 aa18.65■□□□□ 0.58
HMGCS1-205ENST00000508319 SPATA31A1Q5TZJ5 1347 aa18.65■□□□□ 0.58
HMGCS1-205ENST00000508319 EVC2Q86UK5 1308 aa18.65■□□□□ 0.58
HMGCS1-205ENST00000508319 RGPD1P0DJD0 1748 aa18.64■□□□□ 0.57
HMGCS1-205ENST00000508319 DEFB132Q7Z7B7 95 aa18.64■□□□□ 0.57
HMGCS1-205ENST00000508319 STRN4Q9NRL3 753 aa18.63■□□□□ 0.57
HMGCS1-205ENST00000508319 ZRANB1Q9UGI0 708 aa18.63■□□□□ 0.57
HMGCS1-205ENST00000508319 TNS1Q9HBL0 1735 aaKnown RBP18.63■□□□□ 0.57
HMGCS1-205ENST00000508319 NLRP13Q86W25 1043 aa18.62■□□□□ 0.57
HMGCS1-205ENST00000508319 SBNO2Q9Y2G9 1366 aa18.62■□□□□ 0.57
HMGCS1-205ENST00000508319 COL5A2P05997 1499 aaPredicted RBP18.61■□□□□ 0.57
HMGCS1-205ENST00000508319 GCP02774 474 aa18.61■□□□□ 0.57
HMGCS1-205ENST00000508319 SF3B2Q13435 895 aaKnown RBP18.6■□□□□ 0.57
HMGCS1-205ENST00000508319 FAM182BQ5T319 152 aa18.6■□□□□ 0.57
HMGCS1-205ENST00000508319 MON2Q7Z3U7 1717 aa18.6■□□□□ 0.57
HMGCS1-205ENST00000508319 CPSF1Q10570 1443 aaKnown RBP18.58■□□□□ 0.57
HMGCS1-205ENST00000508319 COL18A1P39060 1754 aa18.58■□□□□ 0.57
HMGCS1-205ENST00000508319 LARP1Q6PKG0 1096 aaKnown RBP18.58■□□□□ 0.56
HMGCS1-205ENST00000508319 TONSLQ96HA7 1378 aa18.57■□□□□ 0.56
HMGCS1-205ENST00000508319 NLRP6P59044 892 aa18.57■□□□□ 0.56
HMGCS1-205ENST00000508319 BARGINQ6ZT62 677 aa18.57■□□□□ 0.56
HMGCS1-205ENST00000508319 USP35Q9P2H5 1018 aa18.57■□□□□ 0.56
HMGCS1-205ENST00000508319 PARP4Q9UKK3 1724 aaKnown RBP18.56■□□□□ 0.56
HMGCS1-205ENST00000508319 DISP2A7MBM2 1401 aa18.56■□□□□ 0.56
HMGCS1-205ENST00000508319 EVA1CP58658 441 aa18.55■□□□□ 0.56
HMGCS1-205ENST00000508319 CARD11Q9BXL7 1154 aa18.55■□□□□ 0.56
HMGCS1-205ENST00000508319 AATKQ6ZMQ8 1374 aa18.55■□□□□ 0.56
HMGCS1-205ENST00000508319 TTC21BQ7Z4L5 1316 aa18.54■□□□□ 0.56
HMGCS1-205ENST00000508319 USP54Q70EL1 1684 aa18.54■□□□□ 0.56
HMGCS1-205ENST00000508319 BAG6P46379 1132 aa18.54■□□□□ 0.56
HMGCS1-205ENST00000508319 NFAT5O94916 1531 aa18.54■□□□□ 0.56
HMGCS1-205ENST00000508319 WNK3Q9BYP7 1800 aa18.53■□□□□ 0.56
HMGCS1-205ENST00000508319 CD163L1Q9NR16 1453 aa18.53■□□□□ 0.56
HMGCS1-205ENST00000508319 CRB1P82279 1406 aa18.53■□□□□ 0.56
HMGCS1-205ENST00000508319 TCP11L2Q8N4U5 519 aa18.53■□□□□ 0.56
HMGCS1-205ENST00000508319 ZNF692Q9BU19 519 aaPredicted RBP18.53■□□□□ 0.56
HMGCS1-205ENST00000508319 TTC21AQ8NDW8 1320 aa18.52■□□□□ 0.56
HMGCS1-205ENST00000508319 KTN1Q86UP2 1357 aaKnown RBP18.52■□□□□ 0.55
HMGCS1-205ENST00000508319 LRRC37A3O60309 1634 aa18.52■□□□□ 0.55
HMGCS1-205ENST00000508319 RGPD5Q99666 1765 aa18.51■□□□□ 0.55
HMGCS1-205ENST00000508319 THRAP3Q9Y2W1 955 aaKnown RBP18.51■□□□□ 0.55
HMGCS1-205ENST00000508319 ZBTB7CA1YPR0 619 aa18.5■□□□□ 0.55
HMGCS1-205ENST00000508319 EN1Q05925 392 aaPredicted RBP18.5■□□□□ 0.55
HMGCS1-205ENST00000508319 FAM196AQ6ZSG2 479 aa18.5■□□□□ 0.55
HMGCS1-205ENST00000508319 LRP5O75197 1615 aa18.49■□□□□ 0.55
HMGCS1-205ENST00000508319 TRIM26Q12899 539 aaPredicted RBP18.49■□□□□ 0.55
HMGCS1-205ENST00000508319 PEAK1Q9H792 1746 aa18.49■□□□□ 0.55
HMGCS1-205ENST00000508319 ABCC6O95255 1503 aa18.49■□□□□ 0.55
HMGCS1-205ENST00000508319 ARHGEF25Q86VW2 580 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms