RNA–Protein interactions for RNA: ENST00000503492.5

PCDH1-204, Transcript of protocadherin 1, humanhuman

TSL 5 BASIC

Gene PCDH1, Length 2,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-204ENST00000503492 EDC4Q6P2E9 1401 aaKnown RBP29.29■■■□□ 2.28
PCDH1-204ENST00000503492 NCKAP5LQ9HCH0 1330 aa29.29■■■□□ 2.28
PCDH1-204ENST00000503492 DIAPH1O60610 1272 aaKnown RBP29.27■■■□□ 2.28
PCDH1-204ENST00000503492 CDC42BPGQ6DT37 1551 aa29.27■■■□□ 2.28
PCDH1-204ENST00000503492 CCDC61Q9Y6R9 512 aa29.26■■■□□ 2.28
PCDH1-204ENST00000503492 FBLN1P23142 703 aa29.26■■■□□ 2.27
PCDH1-204ENST00000503492 FER1L4A9Z1Z3 1794 aa29.25■■■□□ 2.27
PCDH1-204ENST00000503492 POLKQ9UBT6 870 aa29.25■■■□□ 2.27
PCDH1-204ENST00000503492 PRR36Q9H6K5 1346 aa29.23■■■□□ 2.27
PCDH1-204ENST00000503492 MSH5O43196 834 aa29.23■■■□□ 2.27
PCDH1-204ENST00000503492 PLPPR3Q6T4P5 718 aa29.23■■■□□ 2.27
PCDH1-204ENST00000503492 NME9Q86XW9 330 aa29.23■■■□□ 2.27
PCDH1-204ENST00000503492 MON2Q7Z3U7 1717 aa29.22■■■□□ 2.27
PCDH1-204ENST00000503492 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.22■■■□□ 2.27
PCDH1-204ENST00000503492 TCERG1O14776 1098 aaKnown RBP29.21■■■□□ 2.27
PCDH1-204ENST00000503492 TMPOP42166 694 aaKnown RBP29.21■■■□□ 2.27
PCDH1-204ENST00000503492 ARHGAP23Q9P227 1491 aa29.21■■■□□ 2.27
PCDH1-204ENST00000503492 SLIT1O75093 1534 aa29.21■■■□□ 2.27
PCDH1-204ENST00000503492 MAP2P11137 1827 aaKnown RBP29.21■■■□□ 2.27
PCDH1-204ENST00000503492 SLC26A8Q96RN1 970 aa29.2■■■□□ 2.27
PCDH1-204ENST00000503492 EID1Q9Y6B2 187 aa29.2■■■□□ 2.27
PCDH1-204ENST00000503492 KDM2BQ8NHM5 1336 aa29.2■■■□□ 2.27
PCDH1-204ENST00000503492 PTPRUQ92729 1446 aa29.2■■■□□ 2.26
PCDH1-204ENST00000503492 AKAP12Q02952 1782 aa29.2■■■□□ 2.26
PCDH1-204ENST00000503492 TRHP20396 242 aaPredicted RBP29.19■■■□□ 2.26
PCDH1-204ENST00000503492 ZRANB1Q9UGI0 708 aa29.19■■■□□ 2.26
PCDH1-204ENST00000503492 MAPK8IP3Q9UPT6 1336 aa29.19■■■□□ 2.26
PCDH1-204ENST00000503492 RARSP54136 660 aaKnown RBP29.18■■■□□ 2.26
PCDH1-204ENST00000503492 MYH16Q9H6N6 1097 aa29.18■■■□□ 2.26
PCDH1-204ENST00000503492 PPM1GO15355 546 aaPredicted RBP29.18■■■□□ 2.26
PCDH1-204ENST00000503492 TRIM35Q9UPQ4 493 aa29.18■■■□□ 2.26
PCDH1-204ENST00000503492 ITSN1Q15811 1721 aa29.17■■■□□ 2.26
PCDH1-204ENST00000503492 PDE3AQ14432 1141 aa29.16■■■□□ 2.26
PCDH1-204ENST00000503492 EMILIN1Q9Y6C2 1016 aa29.15■■■□□ 2.26
PCDH1-204ENST00000503492 ZNF692Q9BU19 519 aaPredicted RBP29.14■■■□□ 2.26
PCDH1-204ENST00000503492 CENPQQ7L2Z9 268 aaPredicted RBP29.13■■■□□ 2.25
PCDH1-204ENST00000503492 PNNQ9H307 717 aaKnown RBP29.13■■■□□ 2.25
PCDH1-204ENST00000503492 FCHSD2O94868 740 aa29.13■■■□□ 2.25
PCDH1-204ENST00000503492 AATKQ6ZMQ8 1374 aa29.13■■■□□ 2.25
PCDH1-204ENST00000503492 LRRC7Q96NW7 1537 aa29.12■■■□□ 2.25
PCDH1-204ENST00000503492 SKAP1Q86WV1 359 aa29.12■■■□□ 2.25
PCDH1-204ENST00000503492 COG3Q96JB2 828 aa29.12■■■□□ 2.25
PCDH1-204ENST00000503492 MS4A1P11836 297 aa29.11■■■□□ 2.25
PCDH1-204ENST00000503492 CANXP27824 592 aaKnown RBP29.11■■■□□ 2.25
PCDH1-204ENST00000503492 THEMISQ8N1K5 641 aaPredicted RBP29.11■■■□□ 2.25
PCDH1-204ENST00000503492 RSPH6AQ9H0K4 717 aa29.11■■■□□ 2.25
PCDH1-204ENST00000503492 TBX22Q9Y458 520 aa29.11■■■□□ 2.25
PCDH1-204ENST00000503492 TOPAZ1Q8N9V7 1692 aa29.11■■■□□ 2.25
PCDH1-204ENST00000503492 RIPK4P57078 832 aa29.1■■■□□ 2.25
PCDH1-204ENST00000503492 AMOTL2Q9Y2J4 779 aa29.1■■■□□ 2.25
PCDH1-204ENST00000503492 FRAT1Q92837 279 aaPredicted RBP29.1■■■□□ 2.25
PCDH1-204ENST00000503492 PANK1Q8TE04 598 aa29.09■■■□□ 2.25
PCDH1-204ENST00000503492 TSR2Q969E8 191 aaKnown RBP29.09■■■□□ 2.25
PCDH1-204ENST00000503492 CDK12Q9NYV4 1490 aaPredicted RBP29.09■■■□□ 2.25
PCDH1-204ENST00000503492 NUTM2FA1L443 756 aa29.08■■■□□ 2.25
PCDH1-204ENST00000503492 PRKAR2BP31323 418 aa29.08■■■□□ 2.25
PCDH1-204ENST00000503492 ANP32EQ9BTT0 268 aa29.08■■■□□ 2.25
PCDH1-204ENST00000503492 IL16Q14005 1332 aa29.07■■■□□ 2.24
PCDH1-204ENST00000503492 IL13P35225 146 aa29.06■■■□□ 2.24
PCDH1-204ENST00000503492 BCL2L13Q9BXK5 485 aa29.06■■■□□ 2.24
PCDH1-204ENST00000503492 PLEKHG3A1L390 1219 aa29.06■■■□□ 2.24
PCDH1-204ENST00000503492 COG6Q9Y2V7 657 aa29.06■■■□□ 2.24
PCDH1-204ENST00000503492 ACEP12821 1306 aa29.06■■■□□ 2.24
PCDH1-204ENST00000503492 NRKQ7Z2Y5 1582 aa29.06■■■□□ 2.24
PCDH1-204ENST00000503492 PDE4AP27815 886 aa29.05■■■□□ 2.24
PCDH1-204ENST00000503492 RRS1Q15050 365 aaKnown RBP29.04■■■□□ 2.24
PCDH1-204ENST00000503492 TTC21BQ7Z4L5 1316 aa29.04■■■□□ 2.24
PCDH1-204ENST00000503492 PTCH1Q13635 1447 aa29.04■■■□□ 2.24
PCDH1-204ENST00000503492 HMOX1P09601 288 aa29.03■■■□□ 2.24
PCDH1-204ENST00000503492 CT47B1P0C2W7 299 aaPredicted RBP29.03■■■□□ 2.24
PCDH1-204ENST00000503492 EXOSC9Q06265 439 aaKnown RBP29.03■■■□□ 2.24
PCDH1-204ENST00000503492 DIP2AQ14689 1571 aa29.03■■■□□ 2.24
PCDH1-204ENST00000503492 TNNQ9UQP3 1299 aa29.02■■■□□ 2.24
PCDH1-204ENST00000503492 BACH2Q9BYV9 841 aa29.01■■■□□ 2.23
PCDH1-204ENST00000503492 PHACTR3Q96KR7 559 aa29.01■■■□□ 2.23
PCDH1-204ENST00000503492 RLBP1P12271 317 aa29■■■□□ 2.23
PCDH1-204ENST00000503492 USP6P35125 1406 aa29■■■□□ 2.23
PCDH1-204ENST00000503492 CLUAP1Q96AJ1 413 aa28.99■■■□□ 2.23
PCDH1-204ENST00000503492 NEFMP07197 916 aa28.98■■■□□ 2.23
PCDH1-204ENST00000503492 OVOS2A0A0J9YW53 1432 aa28.97■■■□□ 2.23
PCDH1-204ENST00000503492 OVOS2Q6IE36 1432 aa28.97■■■□□ 2.23
PCDH1-204ENST00000503492 NFE2L2Q16236 605 aa28.96■■■□□ 2.23
PCDH1-204ENST00000503492 CEP170BQ9Y4F5 1589 aaPredicted RBP28.96■■■□□ 2.23
PCDH1-204ENST00000503492 XRN1Q8IZH2 1706 aaKnown RBP28.96■■■□□ 2.23
PCDH1-204ENST00000503492 IGHDP01880 384 aa28.96■■■□□ 2.23
PCDH1-204ENST00000503492 SSH2Q76I76 1423 aa28.94■■■□□ 2.22
PCDH1-204ENST00000503492 ANP32AP39687 249 aaKnown RBP28.94■■■□□ 2.22
PCDH1-204ENST00000503492 RIMS1Q86UR5 1692 aaKnown RBP28.93■■■□□ 2.22
PCDH1-204ENST00000503492 SSH1Q8WYL5 1049 aa28.91■■■□□ 2.22
PCDH1-204ENST00000503492 SMC4Q9NTJ3 1288 aa28.91■■■□□ 2.22
PCDH1-204ENST00000503492 ZKSCAN2Q63HK3 967 aa28.91■■■□□ 2.22
PCDH1-204ENST00000503492 PMFBP1Q8TBY8 1022 aa28.91■■■□□ 2.22
PCDH1-204ENST00000503492 NALCNQ8IZF0 1738 aa28.9■■■□□ 2.22
PCDH1-204ENST00000503492 RGPD8O14715 1765 aaPredicted RBP28.9■■■□□ 2.22
PCDH1-204ENST00000503492 AAMPQ13685 434 aa28.9■■■□□ 2.22
PCDH1-204ENST00000503492 KCNA6P17658 529 aa28.88■■■□□ 2.21
PCDH1-204ENST00000503492 USP31Q70CQ4 1352 aa28.88■■■□□ 2.21
PCDH1-204ENST00000503492 THUMPD2Q9BTF0 503 aaKnown RBP28.87■■■□□ 2.21
PCDH1-204ENST00000503492 EIF4A2Q14240 407 aaKnown RBP28.87■■■□□ 2.21
PCDH1-204ENST00000503492 ERICH6Q7L0X2 663 aa28.86■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms