RNA–Protein interactions for RNA: ENST00000503468.5

NEDD4-204, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 6,339 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-204ENST00000503468 PSME4Q14997 1843 aa4.11□□□□□ -1.75
NEDD4-204ENST00000503468 TOGARAM1Q9Y4F4 1720 aa4.11□□□□□ -1.75
NEDD4-204ENST00000503468 SLIT2O94813 1529 aa4.11□□□□□ -1.75
NEDD4-204ENST00000503468 SPEF2Q9C093 1822 aa4.1□□□□□ -1.75
NEDD4-204ENST00000503468 SBF2Q86WG5 1849 aa4.1□□□□□ -1.75
NEDD4-204ENST00000503468 EDC4Q6P2E9 1401 aaKnown RBP4.1□□□□□ -1.75
NEDD4-204ENST00000503468 A0A1W2PP64 1363 aa4.09□□□□□ -1.76
NEDD4-204ENST00000503468 BABAM1Q9NWV8 329 aa4.09□□□□□ -1.76
NEDD4-204ENST00000503468 MSH6P52701 1360 aa4.08□□□□□ -1.76
NEDD4-204ENST00000503468 NBPF8Q3BBV2 869 aa4.08□□□□□ -1.76
NEDD4-204ENST00000503468 ANKRD36CQ5JPF3 1778 aa4.08□□□□□ -1.76
NEDD4-204ENST00000503468 SMYD5Q6GMV2 418 aa4.08□□□□□ -1.76
NEDD4-204ENST00000503468 DDX60LQ5H9U9 1706 aaKnown RBP4.08□□□□□ -1.76
NEDD4-204ENST00000503468 ATRNO75882 1429 aa4.07□□□□□ -1.76
NEDD4-204ENST00000503468 CENPJQ9HC77 1338 aaPredicted RBP4.07□□□□□ -1.76
NEDD4-204ENST00000503468 BRCA1P38398 1863 aaKnown RBP4.07□□□□□ -1.76
NEDD4-204ENST00000503468 ONECUT3O60422 494 aaPredicted RBP4.07□□□□□ -1.76
NEDD4-204ENST00000503468 ARHGEF10O15013 1369 aa4.07□□□□□ -1.76
NEDD4-204ENST00000503468 RBBP6Q7Z6E9 1792 aaKnown RBP4.07□□□□□ -1.76
NEDD4-204ENST00000503468 TNS3Q68CZ2 1445 aa4.07□□□□□ -1.76
NEDD4-204ENST00000503468 TAF1LQ8IZX4 1826 aa4.07□□□□□ -1.76
NEDD4-204ENST00000503468 COL14A1Q05707 1796 aaKnown RBP4.06□□□□□ -1.76
NEDD4-204ENST00000503468 SNRKQ9NRH2 765 aa4.06□□□□□ -1.76
NEDD4-204ENST00000503468 ZNF853P0CG23 659 aa4.06□□□□□ -1.76
NEDD4-204ENST00000503468 LOC285556D6RIA3 1793 aa4.06□□□□□ -1.76
NEDD4-204ENST00000503468 USP6P35125 1406 aa4.06□□□□□ -1.76
NEDD4-204ENST00000503468 MPHOSPH9Q99550 1183 aa4.06□□□□□ -1.76
NEDD4-204ENST00000503468 KDM2AQ9Y2K7 1162 aa4.06□□□□□ -1.76
NEDD4-204ENST00000503468 TMED8Q6PL24 325 aaPredicted RBP4.05□□□□□ -1.76
NEDD4-204ENST00000503468 TNS1Q9HBL0 1735 aaKnown RBP4.05□□□□□ -1.76
NEDD4-204ENST00000503468 PRKCSHP14314 528 aaPredicted RBP4.05□□□□□ -1.76
NEDD4-204ENST00000503468 DOCK2Q92608 1830 aa4.05□□□□□ -1.76
NEDD4-204ENST00000503468 IL16Q14005 1332 aa4.05□□□□□ -1.76
NEDD4-204ENST00000503468 ITGB4P16144 1822 aa4.05□□□□□ -1.76
NEDD4-204ENST00000503468 MCCD1P59942 119 aaPredicted RBP4.05□□□□□ -1.76
NEDD4-204ENST00000503468 CCER1Q8TC90 406 aaPredicted RBP4.05□□□□□ -1.76
NEDD4-204ENST00000503468 COL4A4P53420 1690 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-204ENST00000503468 GREB1LQ9C091 1923 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-204ENST00000503468 PLEKHD1A6NEE1 506 aa4.04□□□□□ -1.76
NEDD4-204ENST00000503468 AAMPQ13685 434 aa4.04□□□□□ -1.76
NEDD4-204ENST00000503468 ATAD2Q6PL18 1390 aa4.04□□□□□ -1.76
NEDD4-204ENST00000503468 COL4A1P02462 1669 aa4.04□□□□□ -1.76
NEDD4-204ENST00000503468 MAP3K19Q56UN5 1328 aa4.03□□□□□ -1.76
NEDD4-204ENST00000503468 IGSF1Q8N6C5 1336 aa4.03□□□□□ -1.76
NEDD4-204ENST00000503468 ZNF644Q9H582 1327 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-204ENST00000503468 SUPT5HO00267 1087 aaKnown RBP4.03□□□□□ -1.76
NEDD4-204ENST00000503468 RGPD8O14715 1765 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-204ENST00000503468 RGPD5Q99666 1765 aa4.03□□□□□ -1.76
NEDD4-204ENST00000503468 LTN1O94822 1766 aa4.03□□□□□ -1.76
NEDD4-204ENST00000503468 KIAA0232Q92628 1395 aa4.02□□□□□ -1.77
NEDD4-204ENST00000503468 ATP10DQ9P241 1426 aa4.02□□□□□ -1.77
NEDD4-204ENST00000503468 SOS2Q07890 1332 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-204ENST00000503468 KCPQ6ZWJ8 1503 aa4.02□□□□□ -1.77
NEDD4-204ENST00000503468 EPB41L2O43491 1005 aaKnown RBP4.02□□□□□ -1.77
NEDD4-204ENST00000503468 GTF3C3Q9Y5Q9 886 aa4.02□□□□□ -1.77
NEDD4-204ENST00000503468 CASZ1Q86V15 1759 aa4.02□□□□□ -1.77
NEDD4-204ENST00000503468 ZNF428Q96B54 188 aa4.02□□□□□ -1.77
NEDD4-204ENST00000503468 PPARGC1BQ86YN6 1023 aaKnown RBP4.01□□□□□ -1.77
NEDD4-204ENST00000503468 CHMP7Q8WUX9 453 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-204ENST00000503468 ANP32EQ9BTT0 268 aa4.01□□□□□ -1.77
NEDD4-204ENST00000503468 CRB1P82279 1406 aa4□□□□□ -1.77
NEDD4-204ENST00000503468 LOC105371045A0A1W2PR82 267 aa4□□□□□ -1.77
NEDD4-204ENST00000503468 SSC5DA1L4H1 1573 aa4□□□□□ -1.77
NEDD4-204ENST00000503468 NKX1-1Q15270 411 aaPredicted RBP4□□□□□ -1.77
NEDD4-204ENST00000503468 LRP10Q7Z4F1 713 aa4□□□□□ -1.77
NEDD4-204ENST00000503468 BCL11AQ9H165 835 aa4□□□□□ -1.77
NEDD4-204ENST00000503468 PNISRQ8TF01 805 aaKnown RBP4□□□□□ -1.77
NEDD4-204ENST00000503468 ERBB3P21860 1342 aa3.99□□□□□ -1.77
NEDD4-204ENST00000503468 TNRQ92752 1358 aa3.99□□□□□ -1.77
NEDD4-204ENST00000503468 SALL3Q9BXA9 1300 aa3.99□□□□□ -1.77
NEDD4-204ENST00000503468 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.99□□□□□ -1.772e-6■■■■■ 27.4
NEDD4-204ENST00000503468 CT47B1P0C2W7 299 aaPredicted RBP3.99□□□□□ -1.77
NEDD4-204ENST00000503468 MORC2Q9Y6X9 1032 aaPredicted RBP3.99□□□□□ -1.77
NEDD4-204ENST00000503468 KIF16BQ96L93 1317 aa3.98□□□□□ -1.77
NEDD4-204ENST00000503468 DIEXFQ68CQ4 756 aaKnown RBP3.98□□□□□ -1.77
NEDD4-204ENST00000503468 METP08581 1390 aa3.98□□□□□ -1.77
NEDD4-204ENST00000503468 KIF7Q2M1P5 1343 aa3.98□□□□□ -1.77
NEDD4-204ENST00000503468 THSD7BQ9C0I4 1608 aa3.98□□□□□ -1.77
NEDD4-204ENST00000503468 NEUROD1Q13562 356 aa3.98□□□□□ -1.77
NEDD4-204ENST00000503468 ROBO2Q9HCK4 1378 aa3.98□□□□□ -1.77
NEDD4-204ENST00000503468 RGPD2P0DJD1 1756 aa3.97□□□□□ -1.77
NEDD4-204ENST00000503468 FOCADQ5VW36 1801 aa3.97□□□□□ -1.77
NEDD4-204ENST00000503468 USP47Q96K76 1375 aa3.97□□□□□ -1.77
NEDD4-204ENST00000503468 ADAMTSL1Q8N6G6 1762 aa3.97□□□□□ -1.77
NEDD4-204ENST00000503468 SPAG9O60271 1321 aaKnown RBP3.97□□□□□ -1.77
NEDD4-204ENST00000503468 C11orf95C9JLR9 678 aaPredicted RBP3.97□□□□□ -1.77
NEDD4-204ENST00000503468 TAOK2Q9UL54 1235 aa3.97□□□□□ -1.77
NEDD4-204ENST00000503468 ZNF536O15090 1300 aa3.97□□□□□ -1.77
NEDD4-204ENST00000503468 FRMPD3Q5JV73 1810 aa3.96□□□□□ -1.77
NEDD4-204ENST00000503468 DOT1LQ8TEK3 1739 aa3.96□□□□□ -1.77
NEDD4-204ENST00000503468 PKD2Q13563 968 aa3.96□□□□□ -1.78
NEDD4-204ENST00000503468 RTN4Q9NQC3 1192 aaKnown RBP3.96□□□□□ -1.78
NEDD4-204ENST00000503468 CFDP1Q9UEE9 299 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-204ENST00000503468 MAP3K5Q99683 1374 aa3.96□□□□□ -1.78
NEDD4-204ENST00000503468 PLEKHF1Q96S99 279 aa3.96□□□□□ -1.78
NEDD4-204ENST00000503468 DISP3Q9P2K9 1392 aa3.96□□□□□ -1.78
NEDD4-204ENST00000503468 CNTNAP1P78357 1384 aa3.96□□□□□ -1.78
NEDD4-204ENST00000503468 RTL9Q8NET4 1388 aa3.96□□□□□ -1.78
NEDD4-204ENST00000503468 TTC21AQ8NDW8 1320 aa3.95□□□□□ -1.78
NEDD4-204ENST00000503468 L3MBTL2Q969R5 705 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms