RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 PDE3BQ13370 1112 aa11.22□□□□□ -0.61
SF3A1-210ENST00000498259 PHF8Q9UPP1 1060 aa11.22□□□□□ -0.61
SF3A1-210ENST00000498259 USP6P35125 1406 aa11.21□□□□□ -0.61
SF3A1-210ENST00000498259 MSH6P52701 1360 aa11.21□□□□□ -0.61
SF3A1-210ENST00000498259 TTC21BQ7Z4L5 1316 aa11.21□□□□□ -0.61
SF3A1-210ENST00000498259 NEFMP07197 916 aa11.21□□□□□ -0.61
SF3A1-210ENST00000498259 PSME1Q06323 249 aa11.21□□□□□ -0.61
SF3A1-210ENST00000498259 AATKQ6ZMQ8 1374 aa11.2□□□□□ -0.62
SF3A1-210ENST00000498259 ESCO1Q5FWF5 840 aa11.2□□□□□ -0.62
SF3A1-210ENST00000498259 PMFBP1Q8TBY8 1022 aa11.2□□□□□ -0.62
SF3A1-210ENST00000498259 ADAMTS8Q9UP79 889 aa11.19□□□□□ -0.62
SF3A1-210ENST00000498259 TOPAZ1Q8N9V7 1692 aa11.19□□□□□ -0.62
SF3A1-210ENST00000498259 FMN2Q9NZ56 1722 aa11.18□□□□□ -0.62
SF3A1-210ENST00000498259 TMEM94Q12767 1356 aa11.18□□□□□ -0.62
SF3A1-210ENST00000498259 DIAPH1O60610 1272 aaKnown RBP11.18□□□□□ -0.62
SF3A1-210ENST00000498259 MON2Q7Z3U7 1717 aa11.18□□□□□ -0.62
SF3A1-210ENST00000498259 ANKRD26Q9UPS8 1709 aa11.18□□□□□ -0.62
SF3A1-210ENST00000498259 KIF20BQ96Q89 1820 aa11.17□□□□□ -0.62
SF3A1-210ENST00000498259 NCBP3Q53F19 620 aaKnown RBP11.17□□□□□ -0.62
SF3A1-210ENST00000498259 NME9Q86XW9 330 aa11.17□□□□□ -0.62
SF3A1-210ENST00000498259 AKAP12Q02952 1782 aa11.17□□□□□ -0.62
SF3A1-210ENST00000498259 USP31Q70CQ4 1352 aa11.16□□□□□ -0.62
SF3A1-210ENST00000498259 PAK3O75914 559 aaPredicted RBP11.16□□□□□ -0.62
SF3A1-210ENST00000498259 ABTB2Q8N961 1025 aa11.16□□□□□ -0.62
SF3A1-210ENST00000498259 KCNH5Q8NCM2 988 aa11.16□□□□□ -0.62
SF3A1-210ENST00000498259 BLMP54132 1417 aaPredicted RBP11.16□□□□□ -0.62
SF3A1-210ENST00000498259 PPM1GO15355 546 aaPredicted RBP11.15□□□□□ -0.62
SF3A1-210ENST00000498259 NEFLP07196 543 aa11.15□□□□□ -0.62
SF3A1-210ENST00000498259 U2AF1L5P0DN76 240 aaPredicted RBP11.15□□□□□ -0.62
SF3A1-210ENST00000498259 NLRP6P59044 892 aa11.15□□□□□ -0.62
SF3A1-210ENST00000498259 U2AF1Q01081 240 aaKnown RBP eCLIP11.15□□□□□ -0.62
SF3A1-210ENST00000498259 RUNDC1Q96C34 613 aa11.15□□□□□ -0.62
SF3A1-210ENST00000498259 SSH2Q76I76 1423 aa11.15□□□□□ -0.62
SF3A1-210ENST00000498259 NALCNQ8IZF0 1738 aa11.15□□□□□ -0.63
SF3A1-210ENST00000498259 KIF24Q5T7B8 1368 aa11.15□□□□□ -0.63
SF3A1-210ENST00000498259 PNPLA6Q8IY17 1366 aa11.15□□□□□ -0.63
SF3A1-210ENST00000498259 RBM33Q96EV2 1170 aaKnown RBP11.14□□□□□ -0.63
SF3A1-210ENST00000498259 POLKQ9UBT6 870 aa11.14□□□□□ -0.63
SF3A1-210ENST00000498259 NPHP3Q7Z494 1330 aa11.13□□□□□ -0.63
SF3A1-210ENST00000498259 MAPK8IP3Q9UPT6 1336 aa11.13□□□□□ -0.63
SF3A1-210ENST00000498259 U2SURPO15042 1029 aaKnown RBP11.13□□□□□ -0.63
SF3A1-210ENST00000498259 FCHSD2O94868 740 aa11.13□□□□□ -0.63
SF3A1-210ENST00000498259 C1orf167Q5SNV9 1468 aa11.12□□□□□ -0.63
SF3A1-210ENST00000498259 KIF1AQ12756 1690 aa11.12□□□□□ -0.63
SF3A1-210ENST00000498259 STRCQ7RTU9 1775 aa11.12□□□□□ -0.63
SF3A1-210ENST00000498259 CDK12Q9NYV4 1490 aaPredicted RBP11.12□□□□□ -0.63
SF3A1-210ENST00000498259 OVOS2A0A0J9YW53 1432 aa11.11□□□□□ -0.63
SF3A1-210ENST00000498259 OVOS2Q6IE36 1432 aa11.11□□□□□ -0.63
SF3A1-210ENST00000498259 SMG6Q86US8 1419 aaKnown RBP11.11□□□□□ -0.63
SF3A1-210ENST00000498259 FOXO3O43524 673 aa11.11□□□□□ -0.63
SF3A1-210ENST00000498259 AMPHP49418 695 aa11.11□□□□□ -0.63
SF3A1-210ENST00000498259 KRT28Q7Z3Y7 464 aa11.11□□□□□ -0.63
SF3A1-210ENST00000498259 NRKQ7Z2Y5 1582 aa11.11□□□□□ -0.63
SF3A1-210ENST00000498259 LRRC7Q96NW7 1537 aa11.1□□□□□ -0.63
SF3A1-210ENST00000498259 ORAI2Q96SN7 254 aa11.1□□□□□ -0.63
SF3A1-210ENST00000498259 ZNF335Q9H4Z2 1342 aaPredicted RBP11.09□□□□□ -0.63
SF3A1-210ENST00000498259 SBNO1A3KN83 1393 aa11.09□□□□□ -0.63
SF3A1-210ENST00000498259 FLT4P35916 1363 aa11.09□□□□□ -0.63
SF3A1-210ENST00000498259 CALD1Q05682 793 aaKnown RBP11.09□□□□□ -0.63
SF3A1-210ENST00000498259 GOLGA2Q08379 1002 aa11.09□□□□□ -0.63
SF3A1-210ENST00000498259 CCDC27Q2M243 656 aa11.09□□□□□ -0.63
SF3A1-210ENST00000498259 SLAIN2Q9P270 581 aa11.09□□□□□ -0.63
SF3A1-210ENST00000498259 MST1RQ04912 1400 aa11.09□□□□□ -0.63
SF3A1-210ENST00000498259 APAF1O14727 1248 aa11.08□□□□□ -0.64
SF3A1-210ENST00000498259 LMOD3Q0VAK6 560 aa11.08□□□□□ -0.64
SF3A1-210ENST00000498259 RGPD8O14715 1765 aaPredicted RBP11.08□□□□□ -0.64
SF3A1-210ENST00000498259 RTL1A6NKG5 1358 aa11.07□□□□□ -0.64
SF3A1-210ENST00000498259 ARHGEF10O15013 1369 aa11.07□□□□□ -0.64
SF3A1-210ENST00000498259 E9PSI1 815 aa11.07□□□□□ -0.64
SF3A1-210ENST00000498259 RRS1Q15050 365 aaKnown RBP11.07□□□□□ -0.64
SF3A1-210ENST00000498259 LMOD2Q6P5Q4 547 aa11.07□□□□□ -0.64
SF3A1-210ENST00000498259 WDR63Q8IWG1 891 aa11.07□□□□□ -0.64
SF3A1-210ENST00000498259 CCDC146Q8IYE0 955 aa11.07□□□□□ -0.64
SF3A1-210ENST00000498259 TCP11L2Q8N4U5 519 aa11.07□□□□□ -0.64
SF3A1-210ENST00000498259 ZRANB1Q9UGI0 708 aa11.07□□□□□ -0.64
SF3A1-210ENST00000498259 GTF3C3Q9Y5Q9 886 aa11.07□□□□□ -0.64
SF3A1-210ENST00000498259 EMILIN1Q9Y6C2 1016 aa11.07□□□□□ -0.64
SF3A1-210ENST00000498259 IL13P35225 146 aa11.06□□□□□ -0.64
SF3A1-210ENST00000498259 SALL2Q9Y467 1007 aaPredicted RBP11.06□□□□□ -0.64
SF3A1-210ENST00000498259 ERICH6BQ5W0A0 696 aa11.05□□□□□ -0.64
SF3A1-210ENST00000498259 MYH16Q9H6N6 1097 aa11.05□□□□□ -0.64
SF3A1-210ENST00000498259 COL3A1P02461 1466 aaPredicted RBP11.05□□□□□ -0.64
SF3A1-210ENST00000498259 MAP3K19Q56UN5 1328 aa11.05□□□□□ -0.64
SF3A1-210ENST00000498259 SOX12O15370 315 aa11.04□□□□□ -0.64
SF3A1-210ENST00000498259 MAP2P11137 1827 aaKnown RBP11.04□□□□□ -0.64
SF3A1-210ENST00000498259 USP54Q70EL1 1684 aa11.04□□□□□ -0.64
SF3A1-210ENST00000498259 STRCP1A6NGW2 1772 aa11.03□□□□□ -0.64
SF3A1-210ENST00000498259 GCP02774 474 aa11.03□□□□□ -0.64
SF3A1-210ENST00000498259 NUTM2GQ5VZR2 741 aa11.03□□□□□ -0.64
SF3A1-210ENST00000498259 WWC1Q8IX03 1113 aa11.03□□□□□ -0.64
SF3A1-210ENST00000498259 IP6K1Q92551 441 aa11.03□□□□□ -0.64
SF3A1-210ENST00000498259 PLEKHF1Q96S99 279 aa11.03□□□□□ -0.64
SF3A1-210ENST00000498259 PIK3C2AO00443 1686 aa11.03□□□□□ -0.64
SF3A1-210ENST00000498259 SHPRHQ149N8 1683 aa11.02□□□□□ -0.64
SF3A1-210ENST00000498259 HOXC9P31274 260 aa11.02□□□□□ -0.65
SF3A1-210ENST00000498259 PRKAR2BP31323 418 aa11.02□□□□□ -0.65
SF3A1-210ENST00000498259 TMPOP42166 694 aaKnown RBP11.02□□□□□ -0.65
SF3A1-210ENST00000498259 EIF4A2Q14240 407 aaKnown RBP11.02□□□□□ -0.65
SF3A1-210ENST00000498259 HSP90AB2PQ58FF8 381 aa11.02□□□□□ -0.65
SF3A1-210ENST00000498259 BRINP3Q76B58 766 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms