RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 F12P00748 615 aaPredicted RBP10.48□□□□□ -0.73
SMC4-227ENST00000497984 NFX1Q12986 1120 aaKnown RBP10.48□□□□□ -0.73
SMC4-227ENST00000497984 MYSM1Q5VVJ2 828 aa10.48□□□□□ -0.73
SMC4-227ENST00000497984 SLC24A3Q9HC58 644 aa10.48□□□□□ -0.73
SMC4-227ENST00000497984 LIMD1Q9UGP4 676 aa10.48□□□□□ -0.73
SMC4-227ENST00000497984 STK17AQ9UEE5 414 aa10.47□□□□□ -0.73
SMC4-227ENST00000497984 TLL2Q9Y6L7 1015 aa10.47□□□□□ -0.73
SMC4-227ENST00000497984 WASF2Q9Y6W5 498 aa10.47□□□□□ -0.73
SMC4-227ENST00000497984 WFS1O76024 890 aa10.46□□□□□ -0.73
SMC4-227ENST00000497984 VARSP26640 1264 aaKnown RBP10.46□□□□□ -0.73
SMC4-227ENST00000497984 MAP10Q9P2G4 905 aa10.46□□□□□ -0.73
SMC4-227ENST00000497984 CTHP32929 405 aa10.45□□□□□ -0.74
SMC4-227ENST00000497984 CSPP1Q1MSJ5 1256 aa10.45□□□□□ -0.74
SMC4-227ENST00000497984 TUSC1Q2TAM9 212 aa10.45□□□□□ -0.74
SMC4-227ENST00000497984 TRIM46Q7Z4K8 759 aa10.45□□□□□ -0.74
SMC4-227ENST00000497984 MPNDQ8N594 471 aa10.45□□□□□ -0.74
SMC4-227ENST00000497984 KIFC2Q96AC6 838 aa10.45□□□□□ -0.74
SMC4-227ENST00000497984 PER1O15534 1290 aaPredicted RBP10.44□□□□□ -0.74
SMC4-227ENST00000497984 QPCTQ16769 361 aa10.44□□□□□ -0.74
SMC4-227ENST00000497984 CAPN5O15484 640 aaPredicted RBP10.43□□□□□ -0.74
SMC4-227ENST00000497984 BMP1P13497 986 aa10.43□□□□□ -0.74
SMC4-227ENST00000497984 LCE2CQ5TA81 110 aa10.43□□□□□ -0.74
SMC4-227ENST00000497984 LILRB3O75022 631 aa10.42□□□□□ -0.74
SMC4-227ENST00000497984 FOXJ1Q92949 421 aa10.41□□□□□ -0.74
SMC4-227ENST00000497984 PLEKHG3A1L390 1219 aa10.4□□□□□ -0.74
SMC4-227ENST00000497984 TERTO14746 1132 aaKnown RBP10.39□□□□□ -0.75
SMC4-227ENST00000497984 NNTQ13423 1086 aa10.39□□□□□ -0.75
SMC4-227ENST00000497984 NUTM2BA6NNL0 878 aaPredicted RBP10.38□□□□□ -0.75
SMC4-227ENST00000497984 NUTM2EB1AL46 878 aaPredicted RBP10.38□□□□□ -0.75
SMC4-227ENST00000497984 C4orf48Q5BLP8 95 aa10.38□□□□□ -0.75
SMC4-227ENST00000497984 RTL5Q5HYW3 569 aaPredicted RBP10.38□□□□□ -0.75
SMC4-227ENST00000497984 NUTM2DQ5VT03 806 aaPredicted RBP10.38□□□□□ -0.75
SMC4-227ENST00000497984 NUTM2AQ8IVF1 878 aaPredicted RBP10.38□□□□□ -0.75
SMC4-227ENST00000497984 FAM174AQ8TBP5 190 aa10.38□□□□□ -0.75
SMC4-227ENST00000497984 CDK15Q96Q40 435 aa10.38□□□□□ -0.75
SMC4-227ENST00000497984 CLK2P49760 499 aaKnown RBP10.37□□□□□ -0.75
SMC4-227ENST00000497984 WIPF1O43516 503 aa10.36□□□□□ -0.75
SMC4-227ENST00000497984 TIMP2P16035 220 aa10.36□□□□□ -0.75
SMC4-227ENST00000497984 TSC1Q92574 1164 aa10.36□□□□□ -0.75
SMC4-227ENST00000497984 KLF16Q9BXK1 252 aaPredicted RBP10.36□□□□□ -0.75
SMC4-227ENST00000497984 ADH1CP00326 375 aa10.35□□□□□ -0.75
SMC4-227ENST00000497984 WDR4P57081 412 aaKnown RBP10.33□□□□□ -0.76
SMC4-227ENST00000497984 ZFP42Q96MM3 310 aa10.33□□□□□ -0.76
SMC4-227ENST00000497984 RSPH6AQ9H0K4 717 aa10.33□□□□□ -0.76
SMC4-227ENST00000497984 POLR3EQ9NVU0 708 aa10.33□□□□□ -0.76
SMC4-227ENST00000497984 SH3RF1Q7Z6J0 888 aa10.32□□□□□ -0.76
SMC4-227ENST00000497984 BPHLQ86WA6 291 aaPredicted RBP10.32□□□□□ -0.76
SMC4-227ENST00000497984 HELBQ8NG08 1087 aaPredicted RBP10.32□□□□□ -0.76
SMC4-227ENST00000497984 C1QTNF2Q9BXJ5 285 aa10.32□□□□□ -0.76
SMC4-227ENST00000497984 NR3C2P08235 984 aa10.31□□□□□ -0.76
SMC4-227ENST00000497984 GRM5P41594 1212 aa10.31□□□□□ -0.76
SMC4-227ENST00000497984 ARID5BQ14865 1188 aa10.31□□□□□ -0.76
SMC4-227ENST00000497984 MRPL14Q6P1L8 145 aaKnown RBP10.31□□□□□ -0.76
SMC4-227ENST00000497984 INSM1Q01101 510 aaPredicted RBP10.3□□□□□ -0.76
SMC4-227ENST00000497984 AGERQ15109 404 aa10.3□□□□□ -0.76
SMC4-227ENST00000497984 ARMC2Q8NEN0 867 aa10.3□□□□□ -0.76
SMC4-227ENST00000497984 NXF1Q9UBU9 619 aaKnown RBP10.3□□□□□ -0.76
SMC4-227ENST00000497984 NR5A1Q13285 461 aa10.29□□□□□ -0.76
SMC4-227ENST00000497984 SH3BP5LQ7L8J4 393 aa10.29□□□□□ -0.76
SMC4-227ENST00000497984 CTDSPL2Q05D32 466 aa10.28□□□□□ -0.76
SMC4-227ENST00000497984 NBPF14Q5TI25 921 aa10.28□□□□□ -0.76
SMC4-227ENST00000497984 FBXO31Q5XUX0 539 aaPredicted RBP10.28□□□□□ -0.76
SMC4-227ENST00000497984 ZFAND3Q9H8U3 227 aa10.28□□□□□ -0.76
SMC4-227ENST00000497984 ZIC2O95409 532 aaPredicted RBP10.27□□□□□ -0.77
SMC4-227ENST00000497984 ITPKCQ96DU7 683 aa10.27□□□□□ -0.77
SMC4-227ENST00000497984 PURBQ96QR8 312 aaKnown RBP10.27□□□□□ -0.77
SMC4-227ENST00000497984 SCARF1Q14162 830 aa10.26□□□□□ -0.77
SMC4-227ENST00000497984 NPAS3Q8IXF0 933 aa10.26□□□□□ -0.77
SMC4-227ENST00000497984 TRMT44Q8IYL2 757 aaKnown RBP10.26□□□□□ -0.77
SMC4-227ENST00000497984 GPBP1L1Q9HC44 474 aaPredicted RBP10.26□□□□□ -0.77
SMC4-227ENST00000497984 SKIV2LQ15477 1246 aaKnown RBP10.25□□□□□ -0.77
SMC4-227ENST00000497984 KDM4CQ9H3R0 1056 aa10.25□□□□□ -0.77
SMC4-227ENST00000497984 MAP4K5Q9Y4K4 846 aa10.25□□□□□ -0.77
SMC4-227ENST00000497984 SH3D19Q5HYK7 790 aa10.24□□□□□ -0.77
SMC4-227ENST00000497984 SLC16A10Q8TF71 515 aa10.24□□□□□ -0.77
SMC4-227ENST00000497984 GPKOWQ92917 476 aaPredicted RBP eCLIP10.24□□□□□ -0.774e-13■□□□□ 10.3
SMC4-227ENST00000497984 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.24□□□□□ -0.77
SMC4-227ENST00000497984 H3BM21 787 aa10.23□□□□□ -0.77
SMC4-227ENST00000497984 VEGFBP49765 207 aa10.23□□□□□ -0.77
SMC4-227ENST00000497984 FAM117AQ9C073 453 aa10.23□□□□□ -0.77
SMC4-227ENST00000497984 MAGEB6P1A0A0J9YX57 407 aa10.22□□□□□ -0.77
SMC4-227ENST00000497984 FSHRP23945 695 aa10.22□□□□□ -0.77
SMC4-227ENST00000497984 PROCA1Q8NCQ7 364 aaPredicted RBP10.22□□□□□ -0.77
SMC4-227ENST00000497984 LRRN4Q8WUT4 740 aa10.22□□□□□ -0.77
SMC4-227ENST00000497984 SOBPA7XYQ1 873 aa10.21□□□□□ -0.77
SMC4-227ENST00000497984 ERFEQ4G0M1 354 aa10.21□□□□□ -0.77
SMC4-227ENST00000497984 PPP2R2DQ66LE6 453 aa10.21□□□□□ -0.77
SMC4-227ENST00000497984 GMPRP36959 345 aa10.2□□□□□ -0.78
SMC4-227ENST00000497984 ERBB4Q15303 1308 aa10.2□□□□□ -0.78
SMC4-227ENST00000497984 VASH1Q7L8A9 365 aaPredicted RBP10.2□□□□□ -0.78
SMC4-227ENST00000497984 MEIOBQ8N635 442 aa10.2□□□□□ -0.78
SMC4-227ENST00000497984 DDRGK1Q96HY6 314 aa10.2□□□□□ -0.78
SMC4-227ENST00000497984 CARD14Q9BXL6 1004 aa10.2□□□□□ -0.78
SMC4-227ENST00000497984 IRF7Q92985 503 aa10.19□□□□□ -0.78
SMC4-227ENST00000497984 C6orf118Q5T5N4 469 aa10.18□□□□□ -0.78
SMC4-227ENST00000497984 PDXDC2PQ6P474 469 aa10.18□□□□□ -0.78
SMC4-227ENST00000497984 FKBPLQ9UIM3 349 aa10.18□□□□□ -0.78
SMC4-227ENST00000497984 LORP23490 312 aaPredicted RBP10.17□□□□□ -0.78
SMC4-227ENST00000497984 SUZ12Q15022 739 aaKnown RBP10.17□□□□□ -0.78
SMC4-227ENST00000497984 NR6A1Q15406 480 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms