RNA–Protein interactions for RNA: ENST00000496549.5

CRNKL1-205, Transcript of crooked neck pre-mRNA splicing factor 1, human

TSL 1 (best)

Gene CRNKL1, Length 4,093 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CRNKL1-205	ENST00000496549	GRIN2B	Q13224	1484 aa		9.83	□□□□□ -0.84
CRNKL1-205	ENST00000496549	ANKRD20A12P	Q8NF67	263 aa		9.83	□□□□□ -0.84
CRNKL1-205	ENST00000496549	NPHP1	O15259	732 aa		9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	NEUROD2	Q15784	382 aa		9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	TMCO3	Q6UWJ1	677 aa		9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	RTF1	Q92541	710 aa	Known RBP	9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	C16orf45	Q96MC5	204 aa	Predicted RBP	9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	LRPPRC	P42704	1394 aa	Known RBP	9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	POLR3G	O15318	223 aa	Predicted RBP	9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	CCDC172	P0C7W6	258 aa		9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	MCC	P23508	829 aa		9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	CHMP4C	Q96CF2	233 aa		9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	RBM27	Q9P2N5	1060 aa	Known RBP	9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	USP19	O94966	1318 aa		9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	FKBP5	Q13451	457 aa	Predicted RBP	9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	CT47A1	Q5JQC4	288 aa	Predicted RBP	9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	ITPRIP	Q8IWB1	547 aa		9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	CEP120	Q8N960	986 aa		9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	BCAR3	O75815	825 aa		9.82	□□□□□ -0.84
CRNKL1-205	ENST00000496549	IVL	P07476	585 aa		9.81	□□□□□ -0.84
CRNKL1-205	ENST00000496549	KRBA2	Q6ZNG9	492 aa		9.81	□□□□□ -0.84
CRNKL1-205	ENST00000496549	DNAAF4	Q8WXU2	420 aa		9.81	□□□□□ -0.84
CRNKL1-205	ENST00000496549	LRRFIP2	Q9Y608	721 aa	Known RBP	9.81	□□□□□ -0.84
CRNKL1-205	ENST00000496549	ATP6V1A	P38606	617 aa		9.81	□□□□□ -0.84
CRNKL1-205	ENST00000496549	SYCP1	Q15431	976 aa		9.81	□□□□□ -0.84
CRNKL1-205	ENST00000496549	CDCA8	Q53HL2	280 aa		9.81	□□□□□ -0.84
CRNKL1-205	ENST00000496549	HFM1	A2PYH4	1435 aa		9.8	□□□□□ -0.84
CRNKL1-205	ENST00000496549	TOP2B	Q02880	1626 aa		9.8	□□□□□ -0.84
CRNKL1-205	ENST00000496549		H0YHG0	523 aa		9.8	□□□□□ -0.84
CRNKL1-205	ENST00000496549	HMGB1	P09429	215 aa	Known RBP	9.8	□□□□□ -0.84
CRNKL1-205	ENST00000496549	SARNP	P82979	210 aa	Known RBP	9.8	□□□□□ -0.84
CRNKL1-205	ENST00000496549	OS9	Q13438	667 aa	Predicted RBP	9.8	□□□□□ -0.84
CRNKL1-205	ENST00000496549	NBPF8	Q3BBV2	869 aa		9.8	□□□□□ -0.84
CRNKL1-205	ENST00000496549	LRCH2	Q5VUJ6	765 aa		9.8	□□□□□ -0.84
CRNKL1-205	ENST00000496549	FEZ2	Q9UHY8	353 aa	Predicted RBP	9.8	□□□□□ -0.84
CRNKL1-205	ENST00000496549	DDX41	Q9UJV9	622 aa	Known RBP	9.8	□□□□□ -0.84
CRNKL1-205	ENST00000496549	ATP6V1D	Q9Y5K8	247 aa		9.8	□□□□□ -0.84
CRNKL1-205	ENST00000496549	GNL2	Q13823	731 aa	Known RBP	9.8	□□□□□ -0.84
CRNKL1-205	ENST00000496549	PLEKHH1	Q9ULM0	1364 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	ST20-MTHFS	A0A0A6YYL1	179 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	MAP2K2	P36507	400 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	MNAT1	P51948	309 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	HNRNPH2	P55795	449 aa	Known RBP	9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	RAD51AP2	Q09MP3	1159 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	ZNF710	Q8N1W2	664 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	CNKSR2	Q8WXI2	1034 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	ADAMTS8	Q9UP79	889 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	JRKL	Q9Y4A0	524 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	ABCA10	Q8WWZ4	1543 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	KIF2A	O00139	706 aa	Predicted RBP	9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	TMF1	P82094	1093 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	DUSP27	Q5VZP5	1158 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	CCDC146	Q8IYE0	955 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	FAM107B	Q9H098	131 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	SCAPER	Q9BY12	1400 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	SOX12	O15370	315 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	KIF1C	O43896	1103 aa	Known RBP	9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	HSP90B2P	Q58FF3	399 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	FILIP1	Q7Z7B0	1213 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549		V9GYY5	206 aa	Predicted RBP	9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	ZMYM3	Q14202	1370 aa		9.79	□□□□□ -0.84
CRNKL1-205	ENST00000496549	SATB1	Q01826	763 aa		9.78	□□□□□ -0.84
CRNKL1-205	ENST00000496549	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	9.78	□□□□□ -0.84
CRNKL1-205	ENST00000496549	FOXD4L3	Q6VB84	417 aa	Predicted RBP	9.78	□□□□□ -0.84
CRNKL1-205	ENST00000496549	PTPN14	Q15678	1187 aa		9.78	□□□□□ -0.84
CRNKL1-205	ENST00000496549	ZKSCAN2	Q63HK3	967 aa		9.78	□□□□□ -0.84
CRNKL1-205	ENST00000496549	KIF18A	Q8NI77	898 aa		9.78	□□□□□ -0.84
CRNKL1-205	ENST00000496549	GOLGA6L19	H0YKK7	550 aa		9.78	□□□□□ -0.84
CRNKL1-205	ENST00000496549	TRIM5	Q9C035	493 aa		9.78	□□□□□ -0.84
CRNKL1-205	ENST00000496549	DHX16	O60231	1041 aa	Known RBP	9.77	□□□□□ -0.84
CRNKL1-205	ENST00000496549	CLSTN1	O94985	981 aa		9.77	□□□□□ -0.84
CRNKL1-205	ENST00000496549	SLFN14	P0C7P3	912 aa		9.77	□□□□□ -0.84
CRNKL1-205	ENST00000496549	DHX29	Q7Z478	1369 aa	Known RBP	9.77	□□□□□ -0.84
CRNKL1-205	ENST00000496549	IPO8	O15397	1037 aa	Known RBP	9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	LMAN1	P49257	510 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	CHD1	O14646	1710 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	ARID3C	A6NKF2	412 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	APAF1	O14727	1248 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	ZNF853	P0CG23	659 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	LIG1	P18858	919 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	SLFN5	Q08AF3	891 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	HOMER1	Q86YM7	354 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	C17orf53	Q8N3J3	647 aa	Predicted RBP	9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	PPM1E	Q8WY54	764 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	UBXN4	Q92575	508 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	ACBD3	Q9H3P7	528 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	DDX19B	Q9UMR2	479 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	REC8	O95072	547 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	ZSCAN26	Q16670	478 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	CEP135	Q66GS9	1140 aa		9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	MORC2	Q9Y6X9	1032 aa	Predicted RBP	9.77	□□□□□ -0.85
CRNKL1-205	ENST00000496549	FGD6	Q6ZV73	1430 aa		9.76	□□□□□ -0.85
CRNKL1-205	ENST00000496549	TIAM1	Q13009	1591 aa		9.76	□□□□□ -0.85
CRNKL1-205	ENST00000496549	TPM1	P09493	284 aa		9.76	□□□□□ -0.85
CRNKL1-205	ENST00000496549	CTNNA3	Q9UI47	895 aa		9.76	□□□□□ -0.85
CRNKL1-205	ENST00000496549	JARID2	Q92833	1246 aa	Predicted RBP	9.76	□□□□□ -0.85
CRNKL1-205	ENST00000496549	PAIP2	Q9BPZ3	127 aa	Known RBP	9.76	□□□□□ -0.85
CRNKL1-205	ENST00000496549	CDC45	O75419	566 aa		9.76	□□□□□ -0.85

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