RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 NRAPQ86VF7 1730 aa22.54■■□□□ 1.2
HDAC4-213ENST00000496347 COL14A1Q05707 1796 aaKnown RBP22.53■■□□□ 1.2
HDAC4-213ENST00000496347 PPIP5K1Q6PFW1 1433 aa22.51■■□□□ 1.19
HDAC4-213ENST00000496347 GLI3P10071 1580 aa22.5■■□□□ 1.19
HDAC4-213ENST00000496347 CABLES1Q8TDN4 633 aa22.5■■□□□ 1.19
HDAC4-213ENST00000496347 PLEKHG3A1L390 1219 aa22.49■■□□□ 1.19
HDAC4-213ENST00000496347 SRPK2P78362 688 aaKnown RBP22.49■■□□□ 1.19
HDAC4-213ENST00000496347 UNC5CLQ8IV45 518 aa22.49■■□□□ 1.19
HDAC4-213ENST00000496347 SBNO2Q9Y2G9 1366 aa22.48■■□□□ 1.19
HDAC4-213ENST00000496347 ACEP12821 1306 aa22.47■■□□□ 1.19
HDAC4-213ENST00000496347 NRKQ7Z2Y5 1582 aa22.46■■□□□ 1.19
HDAC4-213ENST00000496347 PAK3O75914 559 aaPredicted RBP22.46■■□□□ 1.19
HDAC4-213ENST00000496347 EVC2Q86UK5 1308 aa22.46■■□□□ 1.19
HDAC4-213ENST00000496347 BRD4O60885 1362 aaPredicted RBP22.46■■□□□ 1.19
HDAC4-213ENST00000496347 ATAD2Q6PL18 1390 aa22.46■■□□□ 1.19
HDAC4-213ENST00000496347 NBPF8Q3BBV2 869 aa22.45■■□□□ 1.18
HDAC4-213ENST00000496347 GJD4Q96KN9 370 aaPredicted RBP22.45■■□□□ 1.18
HDAC4-213ENST00000496347 UPF1Q92900 1129 aaKnown RBP eCLIP22.44■■□□□ 1.18
HDAC4-213ENST00000496347 AKAP12Q02952 1782 aa22.43■■□□□ 1.18
HDAC4-213ENST00000496347 CABP2Q9NPB3 220 aa22.43■■□□□ 1.18
HDAC4-213ENST00000496347 PLEKHG5O94827 1062 aa22.42■■□□□ 1.18
HDAC4-213ENST00000496347 USP6P35125 1406 aa22.41■■□□□ 1.18
HDAC4-213ENST00000496347 VPS72Q15906 364 aa22.41■■□□□ 1.18
HDAC4-213ENST00000496347 FAM83GA6ND36 823 aa22.39■■□□□ 1.17
HDAC4-213ENST00000496347 CARD11Q9BXL7 1154 aa22.39■■□□□ 1.17
HDAC4-213ENST00000496347 BRWD3Q6RI45 1802 aa22.38■■□□□ 1.17
HDAC4-213ENST00000496347 USP19O94966 1318 aa22.38■■□□□ 1.17
HDAC4-213ENST00000496347 PIK3C2AO00443 1686 aa22.38■■□□□ 1.17
HDAC4-213ENST00000496347 MON2Q7Z3U7 1717 aa22.37■■□□□ 1.17
HDAC4-213ENST00000496347 PRDM11Q9NQV5 511 aa22.37■■□□□ 1.17
HDAC4-213ENST00000496347 KIAA0232Q92628 1395 aa22.37■■□□□ 1.17
HDAC4-213ENST00000496347 LMO7Q8WWI1 1683 aa22.36■■□□□ 1.17
HDAC4-213ENST00000496347 SSH2Q76I76 1423 aa22.35■■□□□ 1.17
HDAC4-213ENST00000496347 BTG4Q9NY30 223 aa22.35■■□□□ 1.17
HDAC4-213ENST00000496347 CABP1Q9NZU7 370 aa22.35■■□□□ 1.17
HDAC4-213ENST00000496347 SLIT3O75094 1523 aa22.35■■□□□ 1.17
HDAC4-213ENST00000496347 CPDO75976 1380 aa22.35■■□□□ 1.17
HDAC4-213ENST00000496347 ABTB2Q8N961 1025 aa22.34■■□□□ 1.17
HDAC4-213ENST00000496347 THSD7AQ9UPZ6 1657 aa22.33■■□□□ 1.16
HDAC4-213ENST00000496347 NUTM2GQ5VZR2 741 aa22.31■■□□□ 1.16
HDAC4-213ENST00000496347 CCDC9Q9Y3X0 531 aaKnown RBP22.31■■□□□ 1.16
HDAC4-213ENST00000496347 CPSF1Q10570 1443 aaKnown RBP22.31■■□□□ 1.16
HDAC4-213ENST00000496347 CLSPNQ9HAW4 1339 aa22.31■■□□□ 1.16
HDAC4-213ENST00000496347 NLRP13Q86W25 1043 aa22.3■■□□□ 1.16
HDAC4-213ENST00000496347 USP54Q70EL1 1684 aa22.3■■□□□ 1.16
HDAC4-213ENST00000496347 ONECUT3O60422 494 aaPredicted RBP22.29■■□□□ 1.16
HDAC4-213ENST00000496347 SPATA31A5Q5VU36 1347 aa22.28■■□□□ 1.16
HDAC4-213ENST00000496347 SPATA31A7Q8IWB4 1347 aa22.28■■□□□ 1.16
HDAC4-213ENST00000496347 SEPT12Q8IYM1 358 aa22.27■■□□□ 1.16
HDAC4-213ENST00000496347 ZNF692Q9BU19 519 aaPredicted RBP22.27■■□□□ 1.16
HDAC4-213ENST00000496347 CAMTA1Q9Y6Y1 1673 aa22.26■■□□□ 1.15
HDAC4-213ENST00000496347 TTC21AQ8NDW8 1320 aa22.26■■□□□ 1.15
HDAC4-213ENST00000496347 ZC3H6P61129 1189 aaKnown RBP22.25■■□□□ 1.15
HDAC4-213ENST00000496347 CD163L1Q9NR16 1453 aa22.24■■□□□ 1.15
HDAC4-213ENST00000496347 CHRNA2Q15822 529 aa22.24■■□□□ 1.15
HDAC4-213ENST00000496347 CCDC125Q86Z20 511 aa22.24■■□□□ 1.15
HDAC4-213ENST00000496347 KTN1Q86UP2 1357 aaKnown RBP22.24■■□□□ 1.15
HDAC4-213ENST00000496347 NINLQ9Y2I6 1382 aa22.24■■□□□ 1.15
HDAC4-213ENST00000496347 BLMP54132 1417 aaPredicted RBP22.23■■□□□ 1.15
HDAC4-213ENST00000496347 COL5A2P05997 1499 aaPredicted RBP22.23■■□□□ 1.15
HDAC4-213ENST00000496347 ABCC6O95255 1503 aa22.23■■□□□ 1.15
HDAC4-213ENST00000496347 GCP02774 474 aa22.23■■□□□ 1.15
HDAC4-213ENST00000496347 PUS7Q96PZ0 661 aaKnown RBP22.23■■□□□ 1.15
HDAC4-213ENST00000496347 NLRP6P59044 892 aa22.22■■□□□ 1.15
HDAC4-213ENST00000496347 FAM98CQ17RN3 349 aaKnown RBP22.22■■□□□ 1.15
HDAC4-213ENST00000496347 TIMELESSQ9UNS1 1208 aa22.22■■□□□ 1.15
HDAC4-213ENST00000496347 SPATA31A1Q5TZJ5 1347 aa22.22■■□□□ 1.15
HDAC4-213ENST00000496347 TTC21BQ7Z4L5 1316 aa22.22■■□□□ 1.15
HDAC4-213ENST00000496347 NFAT5O94916 1531 aa22.21■■□□□ 1.15
HDAC4-213ENST00000496347 COL18A1P39060 1754 aa22.21■■□□□ 1.15
HDAC4-213ENST00000496347 SLC24A1O60721 1099 aa22.21■■□□□ 1.15
HDAC4-213ENST00000496347 A0A0G2JS52 829 aa22.2■■□□□ 1.14
HDAC4-213ENST00000496347 MYT1Q01538 1121 aa22.2■■□□□ 1.14
HDAC4-213ENST00000496347 KRT27Q7Z3Y8 459 aa22.2■■□□□ 1.14
HDAC4-213ENST00000496347 AATKQ6ZMQ8 1374 aa22.2■■□□□ 1.14
HDAC4-213ENST00000496347 USP47Q96K76 1375 aa22.2■■□□□ 1.14
HDAC4-213ENST00000496347 TESK2Q96S53 571 aa22.19■■□□□ 1.14
HDAC4-213ENST00000496347 EDC4Q6P2E9 1401 aaKnown RBP22.19■■□□□ 1.14
HDAC4-213ENST00000496347 RGPD1P0DJD0 1748 aa22.18■■□□□ 1.14
HDAC4-213ENST00000496347 STRN4Q9NRL3 753 aa22.18■■□□□ 1.14
HDAC4-213ENST00000496347 WNK3Q9BYP7 1800 aa22.17■■□□□ 1.14
HDAC4-213ENST00000496347 ST20-MTHFSA0A0A6YYL1 179 aa22.17■■□□□ 1.14
HDAC4-213ENST00000496347 PARP4Q9UKK3 1724 aaKnown RBP22.17■■□□□ 1.14
HDAC4-213ENST00000496347 A0A1W2PP64 1363 aa22.16■■□□□ 1.14
HDAC4-213ENST00000496347 KCNH5Q8NCM2 988 aa22.16■■□□□ 1.14
HDAC4-213ENST00000496347 USP31Q70CQ4 1352 aa22.15■■□□□ 1.14
HDAC4-213ENST00000496347 HDGFL2Q7Z4V5 671 aaPredicted RBP22.15■■□□□ 1.14
HDAC4-213ENST00000496347 CRB1P82279 1406 aa22.14■■□□□ 1.14
HDAC4-213ENST00000496347 EVA1CP58658 441 aa22.14■■□□□ 1.13
HDAC4-213ENST00000496347 BARGINQ6ZT62 677 aa22.14■■□□□ 1.13
HDAC4-213ENST00000496347 TMC1Q8TDI8 760 aa22.14■■□□□ 1.13
HDAC4-213ENST00000496347 PCGF6Q9BYE7 350 aa22.14■■□□□ 1.13
HDAC4-213ENST00000496347 TERF2IPQ9NYB0 399 aa22.14■■□□□ 1.13
HDAC4-213ENST00000496347 LTN1O94822 1766 aa22.14■■□□□ 1.13
HDAC4-213ENST00000496347 TNS1Q9HBL0 1735 aaKnown RBP22.13■■□□□ 1.13
HDAC4-213ENST00000496347 LARP1Q6PKG0 1096 aaKnown RBP22.12■■□□□ 1.13
HDAC4-213ENST00000496347 SRCAPQ6ZRS2 3230 aa22.12■■□□□ 1.13
HDAC4-213ENST00000496347 RGPD5Q99666 1765 aa22.12■■□□□ 1.13
HDAC4-213ENST00000496347 TCP11L2Q8N4U5 519 aa22.11■■□□□ 1.13
HDAC4-213ENST00000496347 THRAP3Q9Y2W1 955 aaKnown RBP22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms