RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 PNPLA6Q8IY17 1366 aa14.29□□□□□ -0.12
CMSS1-208ENST00000496116 DIAPH1O60610 1272 aaKnown RBP14.29□□□□□ -0.12
CMSS1-208ENST00000496116 CT47B1P0C2W7 299 aaPredicted RBP14.29□□□□□ -0.12
CMSS1-208ENST00000496116 PLEKHF1Q96S99 279 aa14.29□□□□□ -0.12
CMSS1-208ENST00000496116 FRAT1Q92837 279 aaPredicted RBP14.29□□□□□ -0.12
CMSS1-208ENST00000496116 KNDC1Q76NI1 1749 aa14.28□□□□□ -0.12
CMSS1-208ENST00000496116 WASLO00401 505 aaPredicted RBP14.28□□□□□ -0.12
CMSS1-208ENST00000496116 NPM2Q86SE8 214 aaKnown RBP14.28□□□□□ -0.12
CMSS1-208ENST00000496116 TNRQ92752 1358 aa14.28□□□□□ -0.12
CMSS1-208ENST00000496116 TMPOP42166 694 aaKnown RBP14.27□□□□□ -0.12
CMSS1-208ENST00000496116 CLUAP1Q96AJ1 413 aa14.27□□□□□ -0.12
CMSS1-208ENST00000496116 SIRT1Q96EB6 747 aa14.27□□□□□ -0.12
CMSS1-208ENST00000496116 FAM135BQ49AJ0 1406 aa14.27□□□□□ -0.13
CMSS1-208ENST00000496116 METP08581 1390 aa14.27□□□□□ -0.13
CMSS1-208ENST00000496116 SKAP1Q86WV1 359 aa14.26□□□□□ -0.13
CMSS1-208ENST00000496116 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.26□□□□□ -0.137e-7■■■■□ 21.3
CMSS1-208ENST00000496116 COG6Q9Y2V7 657 aa14.26□□□□□ -0.13
CMSS1-208ENST00000496116 TECPR2O15040 1411 aa14.26□□□□□ -0.13
CMSS1-208ENST00000496116 EDC4Q6P2E9 1401 aaKnown RBP14.26□□□□□ -0.13
CMSS1-208ENST00000496116 PPIP5K1Q6PFW1 1433 aa14.26□□□□□ -0.13
CMSS1-208ENST00000496116 PANK1Q8TE04 598 aa14.26□□□□□ -0.13
CMSS1-208ENST00000496116 CDC42BPGQ6DT37 1551 aa14.25□□□□□ -0.13
CMSS1-208ENST00000496116 PAK3O75914 559 aaPredicted RBP14.25□□□□□ -0.13
CMSS1-208ENST00000496116 NEFMP07197 916 aa14.25□□□□□ -0.13
CMSS1-208ENST00000496116 IL16Q14005 1332 aa14.25□□□□□ -0.13
CMSS1-208ENST00000496116 CPSF1Q10570 1443 aaKnown RBP14.25□□□□□ -0.13
CMSS1-208ENST00000496116 FCHSD2O94868 740 aa14.24□□□□□ -0.13
CMSS1-208ENST00000496116 FAM161AQ3B820 660 aa14.24□□□□□ -0.13
CMSS1-208ENST00000496116 CPS1P31327 1500 aa14.24□□□□□ -0.13
CMSS1-208ENST00000496116 TXNDC2Q86VQ3 553 aa14.24□□□□□ -0.13
CMSS1-208ENST00000496116 TMEM2Q9UHN6 1383 aa14.24□□□□□ -0.13
CMSS1-208ENST00000496116 UBR1Q8IWV7 1749 aa14.24□□□□□ -0.13
CMSS1-208ENST00000496116 RIPK4P57078 832 aa14.23□□□□□ -0.13
CMSS1-208ENST00000496116 TRIM35Q9UPQ4 493 aa14.23□□□□□ -0.13
CMSS1-208ENST00000496116 MAP2P11137 1827 aaKnown RBP14.23□□□□□ -0.13
CMSS1-208ENST00000496116 PMFBP1Q8TBY8 1022 aa14.23□□□□□ -0.13
CMSS1-208ENST00000496116 DDRGK1Q96HY6 314 aa14.23□□□□□ -0.13
CMSS1-208ENST00000496116 POLKQ9UBT6 870 aa14.23□□□□□ -0.13
CMSS1-208ENST00000496116 CCDC61Q9Y6R9 512 aa14.23□□□□□ -0.13
CMSS1-208ENST00000496116 RGS3P49796 1198 aa14.22□□□□□ -0.13
CMSS1-208ENST00000496116 NUDT16Q96DE0 195 aaKnown RBP14.22□□□□□ -0.13
CMSS1-208ENST00000496116 BCL2L13Q9BXK5 485 aa14.22□□□□□ -0.13
CMSS1-208ENST00000496116 PPM1GO15355 546 aaPredicted RBP14.21□□□□□ -0.13
CMSS1-208ENST00000496116 IGHDP01880 384 aa14.21□□□□□ -0.13
CMSS1-208ENST00000496116 ZKSCAN2Q63HK3 967 aa14.21□□□□□ -0.13
CMSS1-208ENST00000496116 TSR2Q969E8 191 aaKnown RBP14.21□□□□□ -0.13
CMSS1-208ENST00000496116 MON2Q7Z3U7 1717 aa14.2□□□□□ -0.14
CMSS1-208ENST00000496116 LRRC7Q96NW7 1537 aa14.2□□□□□ -0.14
CMSS1-208ENST00000496116 AATKQ6ZMQ8 1374 aa14.2□□□□□ -0.14
CMSS1-208ENST00000496116 EXOSC9Q06265 439 aaKnown RBP14.2□□□□□ -0.14
CMSS1-208ENST00000496116 FTSJ3Q8IY81 847 aaKnown RBP14.2□□□□□ -0.14
CMSS1-208ENST00000496116 ZNF692Q9BU19 519 aaPredicted RBP14.2□□□□□ -0.14
CMSS1-208ENST00000496116 ITSN1Q15811 1721 aa14.2□□□□□ -0.14
CMSS1-208ENST00000496116 C8orf34Q49A92 452 aa14.19□□□□□ -0.14
CMSS1-208ENST00000496116 COG3Q96JB2 828 aa14.19□□□□□ -0.14
CMSS1-208ENST00000496116 CDK12Q9NYV4 1490 aaPredicted RBP14.18□□□□□ -0.14
CMSS1-208ENST00000496116 RLBP1P12271 317 aa14.18□□□□□ -0.14
CMSS1-208ENST00000496116 MVPQ14764 893 aaKnown RBP14.18□□□□□ -0.14
CMSS1-208ENST00000496116 RSPH6AQ9H0K4 717 aa14.18□□□□□ -0.14
CMSS1-208ENST00000496116 SMC4Q9NTJ3 1288 aa14.18□□□□□ -0.14
CMSS1-208ENST00000496116 AKAP12Q02952 1782 aa14.18□□□□□ -0.14
CMSS1-208ENST00000496116 PRKAR2BP31323 418 aa14.18□□□□□ -0.14
CMSS1-208ENST00000496116 NME9Q86XW9 330 aa14.18□□□□□ -0.14
CMSS1-208ENST00000496116 DZIP1LQ8IYY4 767 aaKnown RBP14.18□□□□□ -0.14
CMSS1-208ENST00000496116 PLEKHG1Q9ULL1 1385 aa14.18□□□□□ -0.14
CMSS1-208ENST00000496116 ADAMTS13Q76LX8 1427 aa14.17□□□□□ -0.14
CMSS1-208ENST00000496116 CALD1Q05682 793 aaKnown RBP14.17□□□□□ -0.14
CMSS1-208ENST00000496116 RWDD1Q9H446 243 aaPredicted RBP14.17□□□□□ -0.14
CMSS1-208ENST00000496116 C3P01024 1663 aa14.16□□□□□ -0.14
CMSS1-208ENST00000496116 FBLN1P23142 703 aa14.15□□□□□ -0.14
CMSS1-208ENST00000496116 TNNQ9UQP3 1299 aa14.15□□□□□ -0.14
CMSS1-208ENST00000496116 EMILIN1Q9Y6C2 1016 aa14.15□□□□□ -0.14
CMSS1-208ENST00000496116 VIRMAQ69YN4 1812 aaKnown RBP14.15□□□□□ -0.14
CMSS1-208ENST00000496116 KIF16BQ96L93 1317 aa14.15□□□□□ -0.14
CMSS1-208ENST00000496116 ROBO2Q9HCK4 1378 aa14.15□□□□□ -0.14
CMSS1-208ENST00000496116 NFE2L2Q16236 605 aa14.15□□□□□ -0.14
CMSS1-208ENST00000496116 SSH1Q8WYL5 1049 aa14.15□□□□□ -0.14
CMSS1-208ENST00000496116 ZNF428Q96B54 188 aa14.15□□□□□ -0.14
CMSS1-208ENST00000496116 EID1Q9Y6B2 187 aa14.15□□□□□ -0.14
CMSS1-208ENST00000496116 IL13P35225 146 aa14.14□□□□□ -0.15
CMSS1-208ENST00000496116 PCDHB15Q9Y5E8 787 aa14.14□□□□□ -0.15
CMSS1-208ENST00000496116 IPO8O15397 1037 aaKnown RBP14.14□□□□□ -0.15
CMSS1-208ENST00000496116 NBR1Q14596 966 aa14.14□□□□□ -0.15
CMSS1-208ENST00000496116 ALDH1L2Q3SY69 923 aa14.14□□□□□ -0.15
CMSS1-208ENST00000496116 ATF7IPQ6VMQ6 1270 aa14.14□□□□□ -0.15
CMSS1-208ENST00000496116 DDX19BQ9UMR2 479 aa14.14□□□□□ -0.15
CMSS1-208ENST00000496116 HMOX1P09601 288 aa14.13□□□□□ -0.15
CMSS1-208ENST00000496116 TRIM27P14373 513 aa14.13□□□□□ -0.15
CMSS1-208ENST00000496116 PRR36Q9H6K5 1346 aa14.13□□□□□ -0.15
CMSS1-208ENST00000496116 NCKAP5LQ9HCH0 1330 aa14.13□□□□□ -0.15
CMSS1-208ENST00000496116 LTKP29376 864 aa14.12□□□□□ -0.15
CMSS1-208ENST00000496116 LMOD3Q0VAK6 560 aa14.12□□□□□ -0.15
CMSS1-208ENST00000496116 DAXXQ9UER7 740 aaPredicted RBP14.12□□□□□ -0.15
CMSS1-208ENST00000496116 ZRANB1Q9UGI0 708 aa14.12□□□□□ -0.15
CMSS1-208ENST00000496116 NOB1Q9ULX3 412 aaKnown RBP14.12□□□□□ -0.15
CMSS1-208ENST00000496116 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.12□□□□□ -0.15
CMSS1-208ENST00000496116 TOPAZ1Q8N9V7 1692 aa14.11□□□□□ -0.15
CMSS1-208ENST00000496116 RTL5Q5HYW3 569 aaPredicted RBP14.11□□□□□ -0.15
CMSS1-208ENST00000496116 GNAI1P63096 354 aa14.11□□□□□ -0.15
CMSS1-208ENST00000496116 ITPRIPQ8IWB1 547 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms