RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 CCDC184Q52MB2 194 aa9.25□□□□□ -0.93
USP39-219ENST00000496047 CC2D1BQ5T0F9 858 aaKnown RBP9.25□□□□□ -0.93
USP39-219ENST00000496047 BMP2KQ9NSY1 1161 aaPredicted RBP9.25□□□□□ -0.93
USP39-219ENST00000496047 TRAK1Q9UPV9 953 aa9.25□□□□□ -0.93
USP39-219ENST00000496047 A2ML1A8K2U0 1454 aa9.25□□□□□ -0.93
USP39-219ENST00000496047 SMG6Q86US8 1419 aaKnown RBP9.24□□□□□ -0.93
USP39-219ENST00000496047 RIMS2Q9UQ26 1411 aa9.24□□□□□ -0.93
USP39-219ENST00000496047 ADAMTSL3P82987 1691 aa9.24□□□□□ -0.93
USP39-219ENST00000496047 NLRP1Q9C000 1473 aa9.24□□□□□ -0.93
USP39-219ENST00000496047 PER1O15534 1290 aaPredicted RBP9.24□□□□□ -0.93
USP39-219ENST00000496047 MAP3K13O43283 966 aa9.24□□□□□ -0.93
USP39-219ENST00000496047 PLCB2Q00722 1185 aa9.24□□□□□ -0.93
USP39-219ENST00000496047 WDR43Q15061 677 aaKnown RBP eCLIP9.24□□□□□ -0.93
USP39-219ENST00000496047 TRPC6Q9Y210 931 aa9.24□□□□□ -0.93
USP39-219ENST00000496047 TULP4Q9NRJ4 1543 aa9.24□□□□□ -0.93
USP39-219ENST00000496047 NSD2O96028 1365 aa9.24□□□□□ -0.93
USP39-219ENST00000496047 BLMP54132 1417 aaPredicted RBP9.23□□□□□ -0.93
USP39-219ENST00000496047 YTHDC2Q9H6S0 1430 aaKnown RBP9.23□□□□□ -0.93
USP39-219ENST00000496047 IQSEC2Q5JU85 1478 aa9.23□□□□□ -0.93
USP39-219ENST00000496047 SEC24BO95487 1268 aa9.23□□□□□ -0.93
USP39-219ENST00000496047 MLECQ14165 292 aa9.23□□□□□ -0.93
USP39-219ENST00000496047 PNISRQ8TF01 805 aaKnown RBP9.23□□□□□ -0.93
USP39-219ENST00000496047 NRXN3Q9Y4C0 1643 aa9.23□□□□□ -0.93
USP39-219ENST00000496047 ATAD2Q6PL18 1390 aa9.23□□□□□ -0.93
USP39-219ENST00000496047 TNRQ92752 1358 aa9.23□□□□□ -0.93
USP39-219ENST00000496047 AKAP12Q02952 1782 aa9.22□□□□□ -0.93
USP39-219ENST00000496047 RGL2O15211 777 aa9.22□□□□□ -0.93
USP39-219ENST00000496047 PDE3BQ13370 1112 aa9.22□□□□□ -0.93
USP39-219ENST00000496047 LCE2DQ5TA82 110 aaPredicted RBP9.22□□□□□ -0.93
USP39-219ENST00000496047 BBXQ8WY36 941 aaPredicted RBP9.22□□□□□ -0.93
USP39-219ENST00000496047 CPS1P31327 1500 aa9.21□□□□□ -0.93
USP39-219ENST00000496047 DIP2AQ14689 1571 aa9.21□□□□□ -0.93
USP39-219ENST00000496047 RIMS1Q86UR5 1692 aaKnown RBP9.21□□□□□ -0.93
USP39-219ENST00000496047 TIE1P35590 1138 aa9.21□□□□□ -0.94
USP39-219ENST00000496047 POGKQ9P215 609 aa9.21□□□□□ -0.94
USP39-219ENST00000496047 NUDCQ9Y266 331 aa9.21□□□□□ -0.94
USP39-219ENST00000496047 ZMYM3Q14202 1370 aa9.21□□□□□ -0.94
USP39-219ENST00000496047 NSD3Q9BZ95 1437 aa9.21□□□□□ -0.94
USP39-219ENST00000496047 MON2Q7Z3U7 1717 aa9.2□□□□□ -0.94
USP39-219ENST00000496047 POTEFA5A3E0 1075 aa9.2□□□□□ -0.94
USP39-219ENST00000496047 RASEFQ8IZ41 740 aa9.2□□□□□ -0.94
USP39-219ENST00000496047 CGNL1Q0VF96 1302 aa9.2□□□□□ -0.94
USP39-219ENST00000496047 ANKRD36BQ8N2N9 1353 aa9.2□□□□□ -0.94
USP39-219ENST00000496047 SHPRHQ149N8 1683 aa9.2□□□□□ -0.94
USP39-219ENST00000496047 MAP2P11137 1827 aaKnown RBP9.19□□□□□ -0.94
USP39-219ENST00000496047 SETD1BQ9UPS6 1966 aaKnown RBP9.19□□□□□ -0.94
USP39-219ENST00000496047 ZNF142P52746 1687 aaPredicted RBP9.19□□□□□ -0.94
USP39-219ENST00000496047 PPP2R1AP30153 589 aa9.18□□□□□ -0.94
USP39-219ENST00000496047 NUTM2DQ5VT03 806 aaPredicted RBP9.18□□□□□ -0.94
USP39-219ENST00000496047 FBXO31Q5XUX0 539 aaPredicted RBP9.18□□□□□ -0.94
USP39-219ENST00000496047 TMEM132EQ6IEE7 984 aa9.18□□□□□ -0.94
USP39-219ENST00000496047 ADGRB2O60241 1585 aa9.17□□□□□ -0.94
USP39-219ENST00000496047 MED1Q15648 1581 aaPredicted RBP9.17□□□□□ -0.94
USP39-219ENST00000496047 ATP7BP35670 1465 aa9.17□□□□□ -0.94
USP39-219ENST00000496047 CHRM1P11229 460 aaPredicted RBP9.17□□□□□ -0.94
USP39-219ENST00000496047 SRPK2P78362 688 aaKnown RBP9.17□□□□□ -0.94
USP39-219ENST00000496047 NGEFQ8N5V2 710 aa9.17□□□□□ -0.94
USP39-219ENST00000496047 CFAP53Q96M91 514 aa9.17□□□□□ -0.94
USP39-219ENST00000496047 TERF2IPQ9NYB0 399 aa9.17□□□□□ -0.94
USP39-219ENST00000496047 TTLL13PA6NNM8 815 aa9.16□□□□□ -0.94
USP39-219ENST00000496047 RIOK3O14730 519 aaKnown RBP9.16□□□□□ -0.94
USP39-219ENST00000496047 HDGFL2Q7Z4V5 671 aaPredicted RBP9.16□□□□□ -0.94
USP39-219ENST00000496047 MORC1Q86VD1 984 aa9.16□□□□□ -0.94
USP39-219ENST00000496047 STK26Q9P289 416 aa9.16□□□□□ -0.94
USP39-219ENST00000496047 COLQQ9Y215 455 aaPredicted RBP9.16□□□□□ -0.94
USP39-219ENST00000496047 MED14O60244 1454 aa9.15□□□□□ -0.94
USP39-219ENST00000496047 POLR3AO14802 1390 aaPredicted RBP9.15□□□□□ -0.94
USP39-219ENST00000496047 BCANQ96GW7 911 aa9.15□□□□□ -0.94
USP39-219ENST00000496047 TOPAZ1Q8N9V7 1692 aa9.15□□□□□ -0.94
USP39-219ENST00000496047 SLIT1O75093 1534 aa9.15□□□□□ -0.95
USP39-219ENST00000496047 FAM135BQ49AJ0 1406 aa9.14□□□□□ -0.95
USP39-219ENST00000496047 ABCC11Q96J66 1382 aa9.14□□□□□ -0.95
USP39-219ENST00000496047 HAP1P54257 671 aaPredicted RBP9.14□□□□□ -0.95
USP39-219ENST00000496047 PRAM1Q96QH2 718 aa9.14□□□□□ -0.95
USP39-219ENST00000496047 PPP4R2Q9NY27 417 aa9.14□□□□□ -0.95
USP39-219ENST00000496047 EID1Q9Y6B2 187 aa9.14□□□□□ -0.95
USP39-219ENST00000496047 CDC42BPGQ6DT37 1551 aa9.14□□□□□ -0.95
USP39-219ENST00000496047 TECPR2O15040 1411 aa9.14□□□□□ -0.95
USP39-219ENST00000496047 TMEM2Q9UHN6 1383 aa9.13□□□□□ -0.95
USP39-219ENST00000496047 PLEKHG1Q9ULL1 1385 aa9.13□□□□□ -0.95
USP39-219ENST00000496047 CEP170BQ9Y4F5 1589 aaPredicted RBP9.13□□□□□ -0.95
USP39-219ENST00000496047 TRIM35Q9UPQ4 493 aa9.13□□□□□ -0.95
USP39-219ENST00000496047 PCDHB13Q9Y5F0 798 aa9.13□□□□□ -0.95
USP39-219ENST00000496047 MINK1Q8N4C8 1332 aaPredicted RBP9.12□□□□□ -0.95
USP39-219ENST00000496047 FMN2Q9NZ56 1722 aa9.12□□□□□ -0.95
USP39-219ENST00000496047 SAFB2Q14151 953 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP39-219ENST00000496047 A0A1W2PP64 1363 aa9.12□□□□□ -0.95
USP39-219ENST00000496047 UBAP1LF5GYI3 381 aa9.11□□□□□ -0.95
USP39-219ENST00000496047 SIRT1Q96EB6 747 aa9.11□□□□□ -0.95
USP39-219ENST00000496047 SLC12A5Q9H2X9 1139 aa9.11□□□□□ -0.95
USP39-219ENST00000496047 CHD2O14647 1828 aaKnown RBP9.1□□□□□ -0.95
USP39-219ENST00000496047 ARHGAP23Q9P227 1491 aa9.1□□□□□ -0.95
USP39-219ENST00000496047 LTBP4Q8N2S1 1624 aa9.1□□□□□ -0.95
USP39-219ENST00000496047 RGPD8O14715 1765 aaPredicted RBP9.1□□□□□ -0.95
USP39-219ENST00000496047 HS6ST3Q8IZP7 471 aa9.1□□□□□ -0.95
USP39-219ENST00000496047 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.1□□□□□ -0.95
USP39-219ENST00000496047 SPRYD3Q8NCJ5 442 aa9.1□□□□□ -0.95
USP39-219ENST00000496047 CABP2Q9NPB3 220 aa9.1□□□□□ -0.95
USP39-219ENST00000496047 XRN1Q8IZH2 1706 aaKnown RBP9.1□□□□□ -0.95
USP39-219ENST00000496047 NRKQ7Z2Y5 1582 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms