RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 EVA1BQ9NVM1 165 aa10.29□□□□□ -0.76
SMC4-224ENST00000494612 PTPRNQ16849 979 aa10.28□□□□□ -0.76
SMC4-224ENST00000494612 MRPL14Q6P1L8 145 aaKnown RBP10.28□□□□□ -0.76
SMC4-224ENST00000494612 BEGAINQ9BUH8 593 aa10.28□□□□□ -0.76
SMC4-224ENST00000494612 GJA5P36382 358 aa10.27□□□□□ -0.77
SMC4-224ENST00000494612 DESI1Q6ICB0 168 aa10.27□□□□□ -0.77
SMC4-224ENST00000494612 PRR7Q8TB68 274 aa10.27□□□□□ -0.77
SMC4-224ENST00000494612 SPDYE5A6NIY4 337 aa10.26□□□□□ -0.77
SMC4-224ENST00000494612 TRIM66O15016 1216 aa10.26□□□□□ -0.77
SMC4-224ENST00000494612 PARP9Q8IXQ6 854 aa10.26□□□□□ -0.77
SMC4-224ENST00000494612 PURBQ96QR8 312 aaKnown RBP10.26□□□□□ -0.77
SMC4-224ENST00000494612 TLL2Q9Y6L7 1015 aa10.26□□□□□ -0.77
SMC4-224ENST00000494612 NNTQ13423 1086 aa10.25□□□□□ -0.77
SMC4-224ENST00000494612 MTMR2Q13614 643 aa10.25□□□□□ -0.77
SMC4-224ENST00000494612 TBC1D2Q9BYX2 928 aa10.25□□□□□ -0.77
SMC4-224ENST00000494612 VSIG8P0DPA2 414 aa10.24□□□□□ -0.77
SMC4-224ENST00000494612 KCNH2Q12809 1159 aa10.24□□□□□ -0.77
SMC4-224ENST00000494612 UNC93B1Q9H1C4 597 aa10.24□□□□□ -0.77
SMC4-224ENST00000494612 PRKCSHP14314 528 aaPredicted RBP10.23□□□□□ -0.77
SMC4-224ENST00000494612 VARSP26640 1264 aaKnown RBP10.23□□□□□ -0.77
SMC4-224ENST00000494612 KCNMA1Q12791 1236 aa10.23□□□□□ -0.77
SMC4-224ENST00000494612 LINC01559Q495D7 138 aa10.23□□□□□ -0.77
SMC4-224ENST00000494612 RSBN1LQ6PCB5 846 aaPredicted RBP10.23□□□□□ -0.77
SMC4-224ENST00000494612 PCDHB15Q9Y5E8 787 aa10.23□□□□□ -0.77
SMC4-224ENST00000494612 SPTLC1O15269 473 aa10.22□□□□□ -0.77
SMC4-224ENST00000494612 WDR4P57081 412 aaKnown RBP10.22□□□□□ -0.77
SMC4-224ENST00000494612 BAP1Q92560 729 aa10.22□□□□□ -0.77
SMC4-224ENST00000494612 AK7Q96M32 723 aa10.22□□□□□ -0.77
SMC4-224ENST00000494612 SOBPA7XYQ1 873 aa10.21□□□□□ -0.77
SMC4-224ENST00000494612 ADH1CP00326 375 aa10.21□□□□□ -0.77
SMC4-224ENST00000494612 DIXDC1Q155Q3 683 aa10.21□□□□□ -0.77
SMC4-224ENST00000494612 MPNDQ8N594 471 aa10.21□□□□□ -0.77
SMC4-224ENST00000494612 KCTD17Q8N5Z5 321 aa10.21□□□□□ -0.77
SMC4-224ENST00000494612 TIMP2P16035 220 aa10.2□□□□□ -0.78
SMC4-224ENST00000494612 LYPD8Q6UX82 237 aa10.2□□□□□ -0.78
SMC4-224ENST00000494612 ZNF511Q8NB15 262 aa10.19□□□□□ -0.78
SMC4-224ENST00000494612 CFAP99D6REC4 459 aa10.18□□□□□ -0.78
SMC4-224ENST00000494612 MAN1A2O60476 641 aa10.18□□□□□ -0.78
SMC4-224ENST00000494612 HRCP23327 699 aa10.17□□□□□ -0.78
SMC4-224ENST00000494612 PRPF38BQ5VTL8 546 aaKnown RBP10.16□□□□□ -0.78
SMC4-224ENST00000494612 RIC3Q7Z5B4 369 aa10.16□□□□□ -0.78
SMC4-224ENST00000494612 TMEM151AQ8N4L1 468 aa10.16□□□□□ -0.78
SMC4-224ENST00000494612 FAM174AQ8TBP5 190 aa10.15□□□□□ -0.78
SMC4-224ENST00000494612 ZBTB3Q9H5J0 574 aa10.15□□□□□ -0.78
SMC4-224ENST00000494612 TPRNQ4KMQ1 711 aa10.14□□□□□ -0.79
SMC4-224ENST00000494612 RNF225M0QZC1 329 aaPredicted RBP10.13□□□□□ -0.79
SMC4-224ENST00000494612 UPP2O95045 317 aa10.13□□□□□ -0.79
SMC4-224ENST00000494612 GDF11O95390 407 aa10.13□□□□□ -0.79
SMC4-224ENST00000494612 F12P00748 615 aaPredicted RBP10.13□□□□□ -0.79
SMC4-224ENST00000494612 C6orf118Q5T5N4 469 aa10.13□□□□□ -0.79
SMC4-224ENST00000494612 CABLES1Q8TDN4 633 aa10.13□□□□□ -0.79
SMC4-224ENST00000494612 PPFIA3O75145 1194 aa10.12□□□□□ -0.79
SMC4-224ENST00000494612 ZIC2O95409 532 aaPredicted RBP10.12□□□□□ -0.79
SMC4-224ENST00000494612 PDE4DQ08499 809 aa10.12□□□□□ -0.79
SMC4-224ENST00000494612 ARID5BQ14865 1188 aa10.12□□□□□ -0.79
SMC4-224ENST00000494612 CTHP32929 405 aa10.11□□□□□ -0.79
SMC4-224ENST00000494612 TUSC1Q2TAM9 212 aa10.11□□□□□ -0.79
SMC4-224ENST00000494612 KLF16Q9BXK1 252 aaPredicted RBP10.11□□□□□ -0.79
SMC4-224ENST00000494612 LIMD1Q9UGP4 676 aa10.11□□□□□ -0.79
SMC4-224ENST00000494612 PER1O15534 1290 aaPredicted RBP10.1□□□□□ -0.79
SMC4-224ENST00000494612 BMP2P12643 396 aa10.1□□□□□ -0.79
SMC4-224ENST00000494612 GSK3AP49840 483 aa10.1□□□□□ -0.79
SMC4-224ENST00000494612 RASSF7Q02833 373 aa10.1□□□□□ -0.79
SMC4-224ENST00000494612 MYSM1Q5VVJ2 828 aa10.1□□□□□ -0.79
SMC4-224ENST00000494612 MAP10Q9P2G4 905 aa10.1□□□□□ -0.79
SMC4-224ENST00000494612 CDK15Q96Q40 435 aa10.09□□□□□ -0.79
SMC4-224ENST00000494612 ZFAND3Q9H8U3 227 aa10.09□□□□□ -0.79
SMC4-224ENST00000494612 LILRB3O75022 631 aa10.08□□□□□ -0.8
SMC4-224ENST00000494612 QPCTQ16769 361 aa10.08□□□□□ -0.8
SMC4-224ENST00000494612 CSPP1Q1MSJ5 1256 aa10.08□□□□□ -0.8
SMC4-224ENST00000494612 FOXJ1Q92949 421 aa10.08□□□□□ -0.8
SMC4-224ENST00000494612 NR5A1Q13285 461 aa10.07□□□□□ -0.8
SMC4-224ENST00000494612 ITPKCQ96DU7 683 aa10.07□□□□□ -0.8
SMC4-224ENST00000494612 SLC24A3Q9HC58 644 aa10.07□□□□□ -0.8
SMC4-224ENST00000494612 C4orf48Q5BLP8 95 aa10.06□□□□□ -0.8
SMC4-224ENST00000494612 LINC00528Q8N1L1 170 aa10.05□□□□□ -0.8
SMC4-224ENST00000494612 ADAMTS8Q9UP79 889 aa10.05□□□□□ -0.8
SMC4-224ENST00000494612 AGERQ15109 404 aa10.04□□□□□ -0.8
SMC4-224ENST00000494612 CNTNAP3BQ96NU0 1288 aa10.04□□□□□ -0.8
SMC4-224ENST00000494612 CNTNAP3Q9BZ76 1288 aa10.04□□□□□ -0.8
SMC4-224ENST00000494612 RTL5Q5HYW3 569 aaPredicted RBP10.03□□□□□ -0.8
SMC4-224ENST00000494612 NUTM2BA6NNL0 878 aaPredicted RBP10.02□□□□□ -0.81
SMC4-224ENST00000494612 NUTM2EB1AL46 878 aaPredicted RBP10.02□□□□□ -0.81
SMC4-224ENST00000494612 GRM5P41594 1212 aa10.02□□□□□ -0.81
SMC4-224ENST00000494612 NUTM2DQ5VT03 806 aaPredicted RBP10.02□□□□□ -0.81
SMC4-224ENST00000494612 NUTM2AQ8IVF1 878 aaPredicted RBP10.02□□□□□ -0.81
SMC4-224ENST00000494612 SOS2Q07890 1332 aaPredicted RBP10.02□□□□□ -0.81
SMC4-224ENST00000494612 NR3C2P08235 984 aa10.01□□□□□ -0.81
SMC4-224ENST00000494612 MEIOBQ8N635 442 aa10.01□□□□□ -0.81
SMC4-224ENST00000494612 DNMT3LQ9UJW3 386 aa10.01□□□□□ -0.81
SMC4-224ENST00000494612 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10□□□□□ -0.81
SMC4-224ENST00000494612 SH3RF1Q7Z6J0 888 aa10□□□□□ -0.81
SMC4-224ENST00000494612 BPHLQ86WA6 291 aaPredicted RBP10□□□□□ -0.81
SMC4-224ENST00000494612 KRT76Q01546 638 aa9.99□□□□□ -0.81
SMC4-224ENST00000494612 TSC1Q92574 1164 aa9.99□□□□□ -0.81
SMC4-224ENST00000494612 C1QTNF2Q9BXJ5 285 aa9.99□□□□□ -0.81
SMC4-224ENST00000494612 CLK2P49760 499 aaKnown RBP9.98□□□□□ -0.81
SMC4-224ENST00000494612 SVOPQ8N4V2 548 aa9.98□□□□□ -0.81
SMC4-224ENST00000494612 GPR161Q8N6U8 529 aaKnown RBP9.98□□□□□ -0.81
SMC4-224ENST00000494612 ARMC2Q8NEN0 867 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms