RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 DESI1Q6ICB0 168 aa11.1□□□□□ -0.63
SMC4-223ENST00000493695 NUTM2AQ8IVF1 878 aaPredicted RBP11.1□□□□□ -0.63
SMC4-223ENST00000493695 PLEKHG3A1L390 1219 aa11.09□□□□□ -0.63
SMC4-223ENST00000493695 ARID5BQ14865 1188 aa11.09□□□□□ -0.63
SMC4-223ENST00000493695 AGERQ15109 404 aa11.09□□□□□ -0.63
SMC4-223ENST00000493695 CABLES1Q8TDN4 633 aa11.09□□□□□ -0.63
SMC4-223ENST00000493695 CFAP99D6REC4 459 aa11.08□□□□□ -0.64
SMC4-223ENST00000493695 HRCP23327 699 aa11.08□□□□□ -0.64
SMC4-223ENST00000493695 TERTO14746 1132 aaKnown RBP11.07□□□□□ -0.64
SMC4-223ENST00000493695 VARSP26640 1264 aaKnown RBP11.07□□□□□ -0.64
SMC4-223ENST00000493695 NFX1Q12986 1120 aaKnown RBP11.07□□□□□ -0.64
SMC4-223ENST00000493695 SPTLC1O15269 473 aa11.06□□□□□ -0.64
SMC4-223ENST00000493695 GJA5P36382 358 aa11.06□□□□□ -0.64
SMC4-223ENST00000493695 LCE2AQ5TA79 106 aaPredicted RBP11.06□□□□□ -0.64
SMC4-223ENST00000493695 LYPD8Q6UX82 237 aa11.06□□□□□ -0.64
SMC4-223ENST00000493695 MAP10Q9P2G4 905 aa11.06□□□□□ -0.64
SMC4-223ENST00000493695 NNTQ13423 1086 aa11.05□□□□□ -0.64
SMC4-223ENST00000493695 FAM174AQ8TBP5 190 aa11.05□□□□□ -0.64
SMC4-223ENST00000493695 PDE4DQ08499 809 aa11.04□□□□□ -0.64
SMC4-223ENST00000493695 TRIM46Q7Z4K8 759 aa11.03□□□□□ -0.64
SMC4-223ENST00000493695 SLC16A10Q8TF71 515 aa11.03□□□□□ -0.64
SMC4-223ENST00000493695 SLC24A3Q9HC58 644 aa11.03□□□□□ -0.64
SMC4-223ENST00000493695 PRPF38BQ5VTL8 546 aaKnown RBP11.02□□□□□ -0.65
SMC4-223ENST00000493695 FOXJ1Q92949 421 aa11.02□□□□□ -0.65
SMC4-223ENST00000493695 ATP1B4Q9UN42 357 aaPredicted RBP11.02□□□□□ -0.65
SMC4-223ENST00000493695 WDR4P57081 412 aaKnown RBP11.01□□□□□ -0.65
SMC4-223ENST00000493695 INSM1Q01101 510 aaPredicted RBP11□□□□□ -0.65
SMC4-223ENST00000493695 MYSM1Q5VVJ2 828 aa11□□□□□ -0.65
SMC4-223ENST00000493695 LIMD1Q9UGP4 676 aa11□□□□□ -0.65
SMC4-223ENST00000493695 PER1O15534 1290 aaPredicted RBP10.99□□□□□ -0.65
SMC4-223ENST00000493695 SCARF1Q14162 830 aa10.99□□□□□ -0.65
SMC4-223ENST00000493695 QPCTQ16769 361 aa10.99□□□□□ -0.65
SMC4-223ENST00000493695 ZFP42Q96MM3 310 aa10.99□□□□□ -0.65
SMC4-223ENST00000493695 VEGFBP49765 207 aa10.98□□□□□ -0.65
SMC4-223ENST00000493695 NXF1Q9UBU9 619 aaKnown RBP10.98□□□□□ -0.65
SMC4-223ENST00000493695 ADH1CP00326 375 aa10.97□□□□□ -0.65
SMC4-223ENST00000493695 HELBQ8NG08 1087 aaPredicted RBP10.97□□□□□ -0.65
SMC4-223ENST00000493695 PURBQ96QR8 312 aaKnown RBP10.97□□□□□ -0.65
SMC4-223ENST00000493695 F12P00748 615 aaPredicted RBP10.96□□□□□ -0.65
SMC4-223ENST00000493695 BPHLQ86WA6 291 aaPredicted RBP10.96□□□□□ -0.65
SMC4-223ENST00000493695 POLR3EQ9NVU0 708 aa10.96□□□□□ -0.65
SMC4-223ENST00000493695 MRPL14Q6P1L8 145 aaKnown RBP10.95□□□□□ -0.66
SMC4-223ENST00000493695 MAGEB6P1A0A0J9YX57 407 aa10.94□□□□□ -0.66
SMC4-223ENST00000493695 ZIC2O95409 532 aaPredicted RBP10.94□□□□□ -0.66
SMC4-223ENST00000493695 TIMP2P16035 220 aa10.94□□□□□ -0.66
SMC4-223ENST00000493695 MPNDQ8N594 471 aa10.94□□□□□ -0.66
SMC4-223ENST00000493695 ARMC2Q8NEN0 867 aa10.94□□□□□ -0.66
SMC4-223ENST00000493695 WIPF1O43516 503 aa10.93□□□□□ -0.66
SMC4-223ENST00000493695 CLK2P49760 499 aaKnown RBP10.93□□□□□ -0.66
SMC4-223ENST00000493695 C6orf118Q5T5N4 469 aa10.93□□□□□ -0.66
SMC4-223ENST00000493695 STK17AQ9UEE5 414 aa10.93□□□□□ -0.66
SMC4-223ENST00000493695 RSPH6AQ9H0K4 717 aa10.92□□□□□ -0.66
SMC4-223ENST00000493695 ZFAND3Q9H8U3 227 aa10.92□□□□□ -0.66
SMC4-223ENST00000493695 LILRB3O75022 631 aa10.91□□□□□ -0.66
SMC4-223ENST00000493695 RTL5Q5HYW3 569 aaPredicted RBP10.91□□□□□ -0.66
SMC4-223ENST00000493695 NBPF14Q5TI25 921 aa10.91□□□□□ -0.66
SMC4-223ENST00000493695 IRF7Q92985 503 aa10.91□□□□□ -0.66
SMC4-223ENST00000493695 CARD14Q9BXL6 1004 aa10.91□□□□□ -0.66
SMC4-223ENST00000493695 SOBPA7XYQ1 873 aa10.9□□□□□ -0.66
SMC4-223ENST00000493695 UPP2O95045 317 aa10.9□□□□□ -0.66
SMC4-223ENST00000493695 NR5A1Q13285 461 aa10.9□□□□□ -0.66
SMC4-223ENST00000493695 C4orf48Q5BLP8 95 aa10.9□□□□□ -0.66
SMC4-223ENST00000493695 LCE2CQ5TA81 110 aa10.9□□□□□ -0.66
SMC4-223ENST00000493695 ITPKCQ96DU7 683 aa10.9□□□□□ -0.66
SMC4-223ENST00000493695 CDK15Q96Q40 435 aa10.9□□□□□ -0.66
SMC4-223ENST00000493695 NR3C2P08235 984 aa10.88□□□□□ -0.67
SMC4-223ENST00000493695 GMPRP36959 345 aa10.88□□□□□ -0.67
SMC4-223ENST00000493695 VASH1Q7L8A9 365 aaPredicted RBP10.88□□□□□ -0.67
SMC4-223ENST00000493695 MAN1A2O60476 641 aa10.87□□□□□ -0.67
SMC4-223ENST00000493695 BMP2P12643 396 aa10.87□□□□□ -0.67
SMC4-223ENST00000493695 FSHRP23945 695 aa10.87□□□□□ -0.67
SMC4-223ENST00000493695 TUSC1Q2TAM9 212 aa10.86□□□□□ -0.67
SMC4-223ENST00000493695 GRM5P41594 1212 aa10.85□□□□□ -0.67
SMC4-223ENST00000493695 NPAS3Q8IXF0 933 aa10.85□□□□□ -0.67
SMC4-223ENST00000493695 H3BM21 787 aa10.84□□□□□ -0.67
SMC4-223ENST00000493695 CTDSPL2Q05D32 466 aa10.84□□□□□ -0.67
SMC4-223ENST00000493695 KLF16Q9BXK1 252 aaPredicted RBP10.84□□□□□ -0.67
SMC4-223ENST00000493695 FAM181BA6NEQ2 426 aa10.83□□□□□ -0.68
SMC4-223ENST00000493695 LINC00528Q8N1L1 170 aa10.81□□□□□ -0.68
SMC4-223ENST00000493695 ERBB4Q15303 1308 aa10.81□□□□□ -0.68
SMC4-223ENST00000493695 SH3RF1Q7Z6J0 888 aa10.8□□□□□ -0.68
SMC4-223ENST00000493695 SH3BP5LQ7L8J4 393 aa10.79□□□□□ -0.68
SMC4-223ENST00000493695 ZBTB33Q86T24 672 aa10.79□□□□□ -0.68
SMC4-223ENST00000493695 CCDC116Q8IYX3 515 aa10.79□□□□□ -0.68
SMC4-223ENST00000493695 ZSCAN1Q8NBB4 408 aa10.79□□□□□ -0.68
SMC4-223ENST00000493695 LRRN4Q8WUT4 740 aa10.79□□□□□ -0.68
SMC4-223ENST00000493695 ARHGAP9Q9BRR9 750 aa10.79□□□□□ -0.68
SMC4-223ENST00000493695 GPBP1L1Q9HC44 474 aaPredicted RBP10.79□□□□□ -0.68
SMC4-223ENST00000493695 EMILIN1Q9Y6C2 1016 aa10.79□□□□□ -0.68
SMC4-223ENST00000493695 C1QTNF2Q9BXJ5 285 aa10.78□□□□□ -0.68
SMC4-223ENST00000493695 GPKOWQ92917 476 aaPredicted RBP eCLIP10.77□□□□□ -0.69
SMC4-223ENST00000493695 SLC10A4Q96EP9 437 aa10.77□□□□□ -0.69
SMC4-223ENST00000493695 MAP4K5Q9Y4K4 846 aa10.77□□□□□ -0.69
SMC4-223ENST00000493695 AP1G2O75843 785 aa10.76□□□□□ -0.69
SMC4-223ENST00000493695 NR6A1Q15406 480 aa10.76□□□□□ -0.69
SMC4-223ENST00000493695 ERFEQ4G0M1 354 aa10.76□□□□□ -0.69
SMC4-223ENST00000493695 MEIOBQ8N635 442 aa10.76□□□□□ -0.69
SMC4-223ENST00000493695 TSEN34Q9BSV6 310 aaKnown RBP10.76□□□□□ -0.69
SMC4-223ENST00000493695 KDM4CQ9H3R0 1056 aa10.76□□□□□ -0.69
SMC4-223ENST00000493695 SKIV2LQ15477 1246 aaKnown RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms