RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 ABCA8O94911 1581 aa14.47□□□□□ -0.09
HDAC4-210ENST00000493582 MTHFSP49914 203 aa14.47□□□□□ -0.09
HDAC4-210ENST00000493582 RNF214Q8ND24 703 aa14.47□□□□□ -0.09
HDAC4-210ENST00000493582 GPT2Q8TD30 523 aa14.46□□□□□ -0.09
HDAC4-210ENST00000493582 IFT140Q96RY7 1462 aa14.46□□□□□ -0.1
HDAC4-210ENST00000493582 SYCE3A1L190 88 aa14.46□□□□□ -0.1
HDAC4-210ENST00000493582 CCDC27Q2M243 656 aa14.46□□□□□ -0.1
HDAC4-210ENST00000493582 MPNDQ8N594 471 aa14.46□□□□□ -0.1
HDAC4-210ENST00000493582 KIF16BQ96L93 1317 aa14.46□□□□□ -0.1
HDAC4-210ENST00000493582 UNC13BO14795 1591 aa14.45□□□□□ -0.1
HDAC4-210ENST00000493582 CBX1P83916 185 aa14.45□□□□□ -0.1
HDAC4-210ENST00000493582 IQGAP1P46940 1657 aa14.45□□□□□ -0.1
HDAC4-210ENST00000493582 U2AF1L5P0DN76 240 aaPredicted RBP14.45□□□□□ -0.1
HDAC4-210ENST00000493582 U2AF1Q01081 240 aaKnown RBP eCLIP14.45□□□□□ -0.1
HDAC4-210ENST00000493582 DNTTIP2Q5QJE6 756 aaKnown RBP14.44□□□□□ -0.1
HDAC4-210ENST00000493582 CCDC39Q9UFE4 941 aa14.44□□□□□ -0.1
HDAC4-210ENST00000493582 MCM5P33992 734 aa14.44□□□□□ -0.1
HDAC4-210ENST00000493582 NSFL1CQ9UNZ2 370 aaKnown RBP14.44□□□□□ -0.1
HDAC4-210ENST00000493582 IQSEC2Q5JU85 1478 aa14.44□□□□□ -0.1
HDAC4-210ENST00000493582 SAMD9LQ8IVG5 1584 aa14.44□□□□□ -0.1
HDAC4-210ENST00000493582 FAM177BA6PVY3 158 aa14.44□□□□□ -0.1
HDAC4-210ENST00000493582 TMEM63CQ9P1W3 806 aa14.44□□□□□ -0.1
HDAC4-210ENST00000493582 KANK1Q14678 1352 aa14.43□□□□□ -0.1
HDAC4-210ENST00000493582 CFAP70Q5T0N1 1121 aa14.43□□□□□ -0.1
HDAC4-210ENST00000493582 UTP14CQ5TAP6 766 aaKnown RBP14.43□□□□□ -0.1
HDAC4-210ENST00000493582 ATP10BO94823 1461 aa14.43□□□□□ -0.1
HDAC4-210ENST00000493582 NUCB2P80303 420 aa14.43□□□□□ -0.1
HDAC4-210ENST00000493582 PTMAP06454 111 aaKnown RBP14.42□□□□□ -0.1
HDAC4-210ENST00000493582 RSPH4AQ5TD94 716 aa14.42□□□□□ -0.1
HDAC4-210ENST00000493582 C1orf115Q9H7X2 142 aa14.42□□□□□ -0.1
HDAC4-210ENST00000493582 CDC42BPBQ9Y5S2 1711 aa14.42□□□□□ -0.1
HDAC4-210ENST00000493582 CYP2E1P05181 493 aaPredicted RBP14.42□□□□□ -0.1
HDAC4-210ENST00000493582 FBLN2P98095 1184 aa14.42□□□□□ -0.1
HDAC4-210ENST00000493582 FOXD4L5Q5VV16 416 aaPredicted RBP14.42□□□□□ -0.1
HDAC4-210ENST00000493582 LRSAM1Q6UWE0 723 aa14.42□□□□□ -0.1
HDAC4-210ENST00000493582 ZGPATQ8N5A5 531 aaKnown RBP14.42□□□□□ -0.1
HDAC4-210ENST00000493582 FOXD4L4Q8WXT5 416 aaPredicted RBP14.42□□□□□ -0.1
HDAC4-210ENST00000493582 SLC12A5Q9H2X9 1139 aa14.42□□□□□ -0.1
HDAC4-210ENST00000493582 MADDQ8WXG6 1647 aa14.42□□□□□ -0.1
HDAC4-210ENST00000493582 ZNF710Q8N1W2 664 aa14.41□□□□□ -0.1
HDAC4-210ENST00000493582 ATP10AO60312 1499 aa14.41□□□□□ -0.1
HDAC4-210ENST00000493582 ERVK-7P63135 1459 aa14.41□□□□□ -0.1
HDAC4-210ENST00000493582 IQGAP3Q86VI3 1631 aa14.41□□□□□ -0.1
HDAC4-210ENST00000493582 MYRIPQ8NFW9 859 aa14.4□□□□□ -0.1
HDAC4-210ENST00000493582 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.4□□□□□ -0.1
HDAC4-210ENST00000493582 CARMIL2Q6F5E8 1435 aa14.4□□□□□ -0.1
HDAC4-210ENST00000493582 JPH4Q96JJ6 628 aa14.4□□□□□ -0.1
HDAC4-210ENST00000493582 ZNF830Q96NB3 372 aaPredicted RBP14.4□□□□□ -0.1
HDAC4-210ENST00000493582 SHPRHQ149N8 1683 aa14.4□□□□□ -0.1
HDAC4-210ENST00000493582 NSD3Q9BZ95 1437 aa14.4□□□□□ -0.1
HDAC4-210ENST00000493582 KIAA2012Q0VF49 1180 aa14.4□□□□□ -0.1
HDAC4-210ENST00000493582 KDM5AP29375 1690 aaKnown RBP14.39□□□□□ -0.11
HDAC4-210ENST00000493582 ZDHHC9Q9Y397 364 aa14.39□□□□□ -0.11
HDAC4-210ENST00000493582 SHROOM2Q13796 1616 aa14.39□□□□□ -0.11
HDAC4-210ENST00000493582 PREX2Q70Z35 1606 aa14.39□□□□□ -0.11
HDAC4-210ENST00000493582 CT47B1P0C2W7 299 aaPredicted RBP14.39□□□□□ -0.11
HDAC4-210ENST00000493582 ATP2B3Q16720 1220 aa14.39□□□□□ -0.11
HDAC4-210ENST00000493582 CFAP53Q96M91 514 aa14.39□□□□□ -0.11
HDAC4-210ENST00000493582 ARHGAP31Q2M1Z3 1444 aa14.38□□□□□ -0.11
HDAC4-210ENST00000493582 PPP4R3BQ5MIZ7 849 aa14.38□□□□□ -0.11
HDAC4-210ENST00000493582 CEP152O94986 1710 aa14.38□□□□□ -0.11
HDAC4-210ENST00000493582 RABEP1Q15276 862 aa14.37□□□□□ -0.11
HDAC4-210ENST00000493582 C17orf53Q8N3J3 647 aaPredicted RBP14.37□□□□□ -0.11
HDAC4-210ENST00000493582 CHMP7Q8WUX9 453 aaPredicted RBP14.37□□□□□ -0.11
HDAC4-210ENST00000493582 CDC45O75419 566 aa14.37□□□□□ -0.11
HDAC4-210ENST00000493582 SPDYE4A6NLX3 237 aa14.36□□□□□ -0.11
HDAC4-210ENST00000493582 IPO8O15397 1037 aaKnown RBP14.36□□□□□ -0.11
HDAC4-210ENST00000493582 BBXQ8WY36 941 aaPredicted RBP14.36□□□□□ -0.11
HDAC4-210ENST00000493582 IGSF3O75054 1194 aa14.36□□□□□ -0.11
HDAC4-210ENST00000493582 TRIM35Q9UPQ4 493 aa14.36□□□□□ -0.11
HDAC4-210ENST00000493582 SYCP2Q9BX26 1530 aa14.36□□□□□ -0.11
HDAC4-210ENST00000493582 U2SURPO15042 1029 aaKnown RBP14.36□□□□□ -0.11
HDAC4-210ENST00000493582 MAST1Q9Y2H9 1570 aa14.36□□□□□ -0.11
HDAC4-210ENST00000493582 PPIP5K1Q6PFW1 1433 aa14.35□□□□□ -0.11
HDAC4-210ENST00000493582 GSPT1P15170 499 aaKnown RBP14.35□□□□□ -0.11
HDAC4-210ENST00000493582 TMPOP42166 694 aaKnown RBP14.35□□□□□ -0.11
HDAC4-210ENST00000493582 GCC1Q96CN9 775 aa14.34□□□□□ -0.11
HDAC4-210ENST00000493582 SIRT2Q8IXJ6 389 aa14.34□□□□□ -0.11
HDAC4-210ENST00000493582 GTPBP4Q9BZE4 634 aaKnown RBP14.34□□□□□ -0.11
HDAC4-210ENST00000493582 NOS1P29475 1434 aa14.34□□□□□ -0.11
HDAC4-210ENST00000493582 ZBTB7BO15156 539 aaPredicted RBP14.34□□□□□ -0.11
HDAC4-210ENST00000493582 NOLC1Q14978 699 aaKnown RBP eCLIP14.34□□□□□ -0.11
HDAC4-210ENST00000493582 ZNF518AQ6AHZ1 1483 aa14.34□□□□□ -0.11
HDAC4-210ENST00000493582 USP26Q9BXU7 913 aa14.33□□□□□ -0.12
HDAC4-210ENST00000493582 TTC12Q9H892 705 aaPredicted RBP14.33□□□□□ -0.12
HDAC4-210ENST00000493582 CWC22Q9HCG8 908 aaKnown RBP14.33□□□□□ -0.12
HDAC4-210ENST00000493582 TTC37Q6PGP7 1564 aa14.33□□□□□ -0.12
HDAC4-210ENST00000493582 ADGRF5Q8IZF2 1346 aa14.33□□□□□ -0.12
HDAC4-210ENST00000493582 PRIMPOLQ96LW4 560 aa14.32□□□□□ -0.12
HDAC4-210ENST00000493582 KIF20AO95235 890 aa14.32□□□□□ -0.12
HDAC4-210ENST00000493582 KIF3AQ9Y496 699 aa14.32□□□□□ -0.12
HDAC4-210ENST00000493582 CFAP74Q9C0B2 1584 aa14.32□□□□□ -0.12
HDAC4-210ENST00000493582 FOXD4L6Q3SYB3 417 aaPredicted RBP14.32□□□□□ -0.12
HDAC4-210ENST00000493582 FOXD4L3Q6VB84 417 aaPredicted RBP14.32□□□□□ -0.12
HDAC4-210ENST00000493582 TSPY26PQ9H489 355 aa14.32□□□□□ -0.12
HDAC4-210ENST00000493582 CD109Q6YHK3 1445 aa14.31□□□□□ -0.12
HDAC4-210ENST00000493582 STAC3Q96MF2 364 aa14.31□□□□□ -0.12
HDAC4-210ENST00000493582 PTPRTO14522 1441 aa14.31□□□□□ -0.12
HDAC4-210ENST00000493582 GTF2E1P29083 439 aaPredicted RBP14.31□□□□□ -0.12
HDAC4-210ENST00000493582 HMGN5P82970 282 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms