RNA–Protein interactions for RNA: ENST00000489357.5

VTI1A-207, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 3

Gene VTI1A, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-207ENST00000489357 BMP2KQ9NSY1 1161 aaPredicted RBP11.52□□□□□ -0.57
VTI1A-207ENST00000489357 ALKQ9UM73 1620 aa11.52□□□□□ -0.57
VTI1A-207ENST00000489357 EIF3AQ14152 1382 aaKnown RBP11.52□□□□□ -0.57
VTI1A-207ENST00000489357 PTPRUQ92729 1446 aa11.52□□□□□ -0.57
VTI1A-207ENST00000489357 LRRC7Q96NW7 1537 aa11.51□□□□□ -0.57
VTI1A-207ENST00000489357 TTLL13PA6NNM8 815 aa11.51□□□□□ -0.57
VTI1A-207ENST00000489357 CABP2Q9NPB3 220 aa11.51□□□□□ -0.57
VTI1A-207ENST00000489357 INSRP06213 1382 aa11.51□□□□□ -0.57
VTI1A-207ENST00000489357 METP08581 1390 aa11.51□□□□□ -0.57
VTI1A-207ENST00000489357 PIK3C2GO75747 1445 aa11.51□□□□□ -0.57
VTI1A-207ENST00000489357 XRN1Q8IZH2 1706 aaKnown RBP11.5□□□□□ -0.57
VTI1A-207ENST00000489357 CDCA8Q53HL2 280 aa11.5□□□□□ -0.57
VTI1A-207ENST00000489357 BRD4O60885 1362 aaPredicted RBP11.5□□□□□ -0.57
VTI1A-207ENST00000489357 TMF1P82094 1093 aa11.49□□□□□ -0.57
VTI1A-207ENST00000489357 C14orf93Q9H972 538 aaKnown RBP11.49□□□□□ -0.57
VTI1A-207ENST00000489357 MRS2Q9HD23 443 aa11.49□□□□□ -0.57
VTI1A-207ENST00000489357 SUPT16HQ9Y5B9 1047 aaKnown RBP11.49□□□□□ -0.57
VTI1A-207ENST00000489357 ZBED9Q6R2W3 1325 aa11.49□□□□□ -0.57
VTI1A-207ENST00000489357 NKTRP30414 1462 aaKnown RBP11.49□□□□□ -0.57
VTI1A-207ENST00000489357 UBAP1LF5GYI3 381 aa11.48□□□□□ -0.57
VTI1A-207ENST00000489357 NEFLP07196 543 aa11.48□□□□□ -0.57
VTI1A-207ENST00000489357 GOLGA2Q08379 1002 aa11.48□□□□□ -0.57
VTI1A-207ENST00000489357 ERICH6BQ5W0A0 696 aa11.48□□□□□ -0.57
VTI1A-207ENST00000489357 TESK2Q96S53 571 aa11.48□□□□□ -0.57
VTI1A-207ENST00000489357 NCOA3Q9Y6Q9 1424 aa11.48□□□□□ -0.57
VTI1A-207ENST00000489357 SBNO2Q9Y2G9 1366 aa11.47□□□□□ -0.57
VTI1A-207ENST00000489357 HNRNPUQ00839 825 aaKnown RBP eCLIP11.47□□□□□ -0.57
VTI1A-207ENST00000489357 NKX1-1Q15270 411 aaPredicted RBP11.47□□□□□ -0.57
VTI1A-207ENST00000489357 DCBLD2Q96PD2 775 aa11.47□□□□□ -0.57
VTI1A-207ENST00000489357 ASXL1Q8IXJ9 1541 aa11.46□□□□□ -0.57
VTI1A-207ENST00000489357 MYBBP1AQ9BQG0 1328 aaKnown RBP11.46□□□□□ -0.57
VTI1A-207ENST00000489357 ATMINO43313 823 aaPredicted RBP11.46□□□□□ -0.57
VTI1A-207ENST00000489357 EFCAB3Q8N7B9 438 aa11.46□□□□□ -0.57
VTI1A-207ENST00000489357 BCANQ96GW7 911 aa11.46□□□□□ -0.57
VTI1A-207ENST00000489357 AMOTL2Q9Y2J4 779 aa11.46□□□□□ -0.57
VTI1A-207ENST00000489357 PARD3Q8TEW0 1356 aa11.45□□□□□ -0.58
VTI1A-207ENST00000489357 ATN1P54259 1190 aaPredicted RBP11.45□□□□□ -0.58
VTI1A-207ENST00000489357 PLCB2Q00722 1185 aa11.45□□□□□ -0.58
VTI1A-207ENST00000489357 ASTLQ6HA08 431 aaPredicted RBP11.45□□□□□ -0.58
VTI1A-207ENST00000489357 SPRYD3Q8NCJ5 442 aa11.45□□□□□ -0.58
VTI1A-207ENST00000489357 TECPR2O15040 1411 aa11.44□□□□□ -0.58
VTI1A-207ENST00000489357 ABCC11Q96J66 1382 aa11.44□□□□□ -0.58
VTI1A-207ENST00000489357 NBPF1Q3BBV0 1214 aa11.44□□□□□ -0.58
VTI1A-207ENST00000489357 PAXIP1Q6ZW49 1069 aaPredicted RBP11.44□□□□□ -0.58
VTI1A-207ENST00000489357 SIRT1Q96EB6 747 aa11.44□□□□□ -0.58
VTI1A-207ENST00000489357 TRIM35Q9UPQ4 493 aa11.44□□□□□ -0.58
VTI1A-207ENST00000489357 ADGRB1O14514 1584 aa11.44□□□□□ -0.58
VTI1A-207ENST00000489357 KNDC1Q76NI1 1749 aa11.43□□□□□ -0.58
VTI1A-207ENST00000489357 TMEM94Q12767 1356 aa11.43□□□□□ -0.58
VTI1A-207ENST00000489357 MKRN3Q13064 507 aaKnown RBP11.43□□□□□ -0.58
VTI1A-207ENST00000489357 CFAP70Q5T0N1 1121 aa11.43□□□□□ -0.58
VTI1A-207ENST00000489357 PROSER2Q86WR7 435 aaPredicted RBP11.43□□□□□ -0.58
VTI1A-207ENST00000489357 CFAP44Q96MT7 982 aa11.43□□□□□ -0.58
VTI1A-207ENST00000489357 PTCH1Q13635 1447 aa11.43□□□□□ -0.58
VTI1A-207ENST00000489357 LRPPRCP42704 1394 aaKnown RBP11.42□□□□□ -0.58
VTI1A-207ENST00000489357 NPC1L1Q9UHC9 1359 aa11.42□□□□□ -0.58
VTI1A-207ENST00000489357 SOX12O15370 315 aa11.42□□□□□ -0.58
VTI1A-207ENST00000489357 PIP4K2BP78356 416 aa11.42□□□□□ -0.58
VTI1A-207ENST00000489357 NLRP13Q86W25 1043 aa11.42□□□□□ -0.58
VTI1A-207ENST00000489357 DISP3Q9P2K9 1392 aa11.41□□□□□ -0.58
VTI1A-207ENST00000489357 PER1O15534 1290 aaPredicted RBP11.41□□□□□ -0.58
VTI1A-207ENST00000489357 TOM1O60784 492 aa11.41□□□□□ -0.58
VTI1A-207ENST00000489357 RBM33Q96EV2 1170 aaKnown RBP11.41□□□□□ -0.58
VTI1A-207ENST00000489357 RYDENQ9NUL5 291 aaKnown RBP11.41□□□□□ -0.58
VTI1A-207ENST00000489357 ROBO2Q9HCK4 1378 aa11.41□□□□□ -0.58
VTI1A-207ENST00000489357 TMEM132EQ6IEE7 984 aa11.4□□□□□ -0.58
VTI1A-207ENST00000489357 TMC1Q8TDI8 760 aa11.4□□□□□ -0.58
VTI1A-207ENST00000489357 PNISRQ8TF01 805 aaKnown RBP11.4□□□□□ -0.58
VTI1A-207ENST00000489357 YTHDC2Q9H6S0 1430 aaKnown RBP11.4□□□□□ -0.58
VTI1A-207ENST00000489357 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.4□□□□□ -0.58
VTI1A-207ENST00000489357 GTPBP6O43824 516 aaPredicted RBP11.39□□□□□ -0.59
VTI1A-207ENST00000489357 FAM135BQ49AJ0 1406 aa11.39□□□□□ -0.59
VTI1A-207ENST00000489357 SMG6Q86US8 1419 aaKnown RBP11.39□□□□□ -0.59
VTI1A-207ENST00000489357 MFRPQ9BY79 579 aa11.39□□□□□ -0.59
VTI1A-207ENST00000489357 DLC1Q96QB1 1528 aa11.39□□□□□ -0.59
VTI1A-207ENST00000489357 CCDC184Q52MB2 194 aa11.38□□□□□ -0.59
VTI1A-207ENST00000489357 FAM9BQ8IZU0 186 aa11.38□□□□□ -0.59
VTI1A-207ENST00000489357 POLR3GLQ9BT43 218 aa11.38□□□□□ -0.59
VTI1A-207ENST00000489357 C19orf44Q9H6X5 657 aa11.38□□□□□ -0.59
VTI1A-207ENST00000489357 MYOM1P52179 1685 aa11.37□□□□□ -0.59
VTI1A-207ENST00000489357 DCCP43146 1447 aa11.37□□□□□ -0.59
VTI1A-207ENST00000489357 NLRP6P59044 892 aa11.37□□□□□ -0.59
VTI1A-207ENST00000489357 PUS7Q96PZ0 661 aaKnown RBP11.37□□□□□ -0.59
VTI1A-207ENST00000489357 NALCNQ8IZF0 1738 aa11.37□□□□□ -0.59
VTI1A-207ENST00000489357 ADGRL3Q9HAR2 1447 aa11.36□□□□□ -0.59
VTI1A-207ENST00000489357 POTEIP0CG38 1075 aa11.36□□□□□ -0.59
VTI1A-207ENST00000489357 PHF8Q9UPP1 1060 aa11.36□□□□□ -0.59
VTI1A-207ENST00000489357 HSPA1LP34931 641 aa11.35□□□□□ -0.59
VTI1A-207ENST00000489357 ARHGEF28Q8N1W1 1705 aaKnown RBP11.35□□□□□ -0.59
VTI1A-207ENST00000489357 MSH6P52701 1360 aa11.34□□□□□ -0.59
VTI1A-207ENST00000489357 PLEKHH1Q9ULM0 1364 aa11.34□□□□□ -0.59
VTI1A-207ENST00000489357 PDE3BQ13370 1112 aa11.34□□□□□ -0.59
VTI1A-207ENST00000489357 IER5LQ5T953 404 aa11.34□□□□□ -0.59
VTI1A-207ENST00000489357 WAPLQ7Z5K2 1190 aa11.34□□□□□ -0.59
VTI1A-207ENST00000489357 FBXO22Q8NEZ5 403 aa11.34□□□□□ -0.59
VTI1A-207ENST00000489357 CADPS2Q86UW7 1296 aa11.33□□□□□ -0.6
VTI1A-207ENST00000489357 PANK3Q9H999 370 aa11.33□□□□□ -0.6
VTI1A-207ENST00000489357 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.33□□□□□ -0.61e-6■■□□□ 13.5
VTI1A-207ENST00000489357 SLAIN2Q9P270 581 aa11.33□□□□□ -0.6
VTI1A-207ENST00000489357 STK26Q9P289 416 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms