RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 EDC4Q6P2E9 1401 aaKnown RBP19.17■□□□□ 0.66
CUX1-209ENST00000487284 FAM9BQ8IZU0 186 aa19.17■□□□□ 0.66
CUX1-209ENST00000487284 PNISRQ8TF01 805 aaKnown RBP19.17■□□□□ 0.66
CUX1-209ENST00000487284 KIF20BQ96Q89 1820 aa19.17■□□□□ 0.66
CUX1-209ENST00000487284 HNRNPUQ00839 825 aaKnown RBP eCLIP19.15■□□□□ 0.66
CUX1-209ENST00000487284 IQSEC2Q5JU85 1478 aa19.15■□□□□ 0.66
CUX1-209ENST00000487284 FOXO3O43524 673 aa19.15■□□□□ 0.66
CUX1-209ENST00000487284 BRINP3Q76B58 766 aa19.15■□□□□ 0.66
CUX1-209ENST00000487284 SSH2Q76I76 1423 aa19.14■□□□□ 0.66
CUX1-209ENST00000487284 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.14■□□□□ 0.65
CUX1-209ENST00000487284 CGNL1Q0VF96 1302 aa19.13■□□□□ 0.65
CUX1-209ENST00000487284 TTC21BQ7Z4L5 1316 aa19.12■□□□□ 0.65
CUX1-209ENST00000487284 CERKQ8TCT0 537 aa19.12■□□□□ 0.65
CUX1-209ENST00000487284 ROBO1Q9Y6N7 1651 aa19.12■□□□□ 0.65
CUX1-209ENST00000487284 PPP2R1AP30153 589 aa19.11■□□□□ 0.65
CUX1-209ENST00000487284 XPCQ01831 940 aaPredicted RBP19.11■□□□□ 0.65
CUX1-209ENST00000487284 DDX17Q92841 729 aaKnown RBP19.11■□□□□ 0.65
CUX1-209ENST00000487284 NSD2O96028 1365 aa19.11■□□□□ 0.65
CUX1-209ENST00000487284 TRPM3Q9HCF6 1732 aaPredicted RBP19.11■□□□□ 0.65
CUX1-209ENST00000487284 PSME1Q06323 249 aa19.1■□□□□ 0.65
CUX1-209ENST00000487284 NHSL1Q5SYE7 1610 aa19.1■□□□□ 0.65
CUX1-209ENST00000487284 FYB1O15117 783 aa19.1■□□□□ 0.65
CUX1-209ENST00000487284 NME9Q86XW9 330 aa19.1■□□□□ 0.65
CUX1-209ENST00000487284 GGNBP2Q9H3C7 697 aa19.1■□□□□ 0.65
CUX1-209ENST00000487284 INSRP06213 1382 aa19.1■□□□□ 0.65
CUX1-209ENST00000487284 PIK3C2AO00443 1686 aa19.1■□□□□ 0.65
CUX1-209ENST00000487284 NPHP3Q7Z494 1330 aa19.09■□□□□ 0.65
CUX1-209ENST00000487284 SCAF1Q9H7N4 1312 aaKnown RBP19.08■□□□□ 0.65
CUX1-209ENST00000487284 KRT28Q7Z3Y7 464 aa19.08■□□□□ 0.65
CUX1-209ENST00000487284 ZBED9Q6R2W3 1325 aa19.08■□□□□ 0.64
CUX1-209ENST00000487284 TTC21AQ8NDW8 1320 aa19.08■□□□□ 0.64
CUX1-209ENST00000487284 PXDNQ92626 1479 aa19.08■□□□□ 0.64
CUX1-209ENST00000487284 TOM1O60784 492 aa19.07■□□□□ 0.64
CUX1-209ENST00000487284 UBAP1LF5GYI3 381 aa19.06■□□□□ 0.64
CUX1-209ENST00000487284 PAK3O75914 559 aaPredicted RBP19.06■□□□□ 0.64
CUX1-209ENST00000487284 ZRANB1Q9UGI0 708 aa19.06■□□□□ 0.64
CUX1-209ENST00000487284 SHPRHQ149N8 1683 aa19.05■□□□□ 0.64
CUX1-209ENST00000487284 ALS2Q96Q42 1657 aa19.05■□□□□ 0.64
CUX1-209ENST00000487284 MARF1Q9Y4F3 1742 aaKnown RBP19.05■□□□□ 0.64
CUX1-209ENST00000487284 BLMP54132 1417 aaPredicted RBP19.04■□□□□ 0.64
CUX1-209ENST00000487284 OVOS2A0A0J9YW53 1432 aa19.03■□□□□ 0.64
CUX1-209ENST00000487284 OVOS2Q6IE36 1432 aa19.03■□□□□ 0.64
CUX1-209ENST00000487284 USP54Q70EL1 1684 aa19.03■□□□□ 0.64
CUX1-209ENST00000487284 MORC1Q86VD1 984 aa19.03■□□□□ 0.64
CUX1-209ENST00000487284 GTF3C3Q9Y5Q9 886 aa19.03■□□□□ 0.64
CUX1-209ENST00000487284 AHDC1Q5TGY3 1603 aaPredicted RBP19.03■□□□□ 0.64
CUX1-209ENST00000487284 PIP4K2BP78356 416 aa19.02■□□□□ 0.64
CUX1-209ENST00000487284 ABTB2Q8N961 1025 aa19.02■□□□□ 0.64
CUX1-209ENST00000487284 SOS2Q07890 1332 aaPredicted RBP19.02■□□□□ 0.64
CUX1-209ENST00000487284 NUTM2GQ5VZR2 741 aa19.02■□□□□ 0.63
CUX1-209ENST00000487284 SBNO1A3KN83 1393 aa19.01■□□□□ 0.63
CUX1-209ENST00000487284 TNNT2P45379 298 aaPredicted RBP19.01■□□□□ 0.63
CUX1-209ENST00000487284 COG3Q96JB2 828 aa19.01■□□□□ 0.63
CUX1-209ENST00000487284 USP31Q70CQ4 1352 aa19.01■□□□□ 0.63
CUX1-209ENST00000487284 TNS3Q68CZ2 1445 aa19.01■□□□□ 0.63
CUX1-209ENST00000487284 NLRP6P59044 892 aa18.99■□□□□ 0.63
CUX1-209ENST00000487284 LMOD2Q6P5Q4 547 aa18.99■□□□□ 0.63
CUX1-209ENST00000487284 SPATA31A3Q5VYP0 1347 aa18.98■□□□□ 0.63
CUX1-209ENST00000487284 PHLPP1O60346 1717 aa18.98■□□□□ 0.63
CUX1-209ENST00000487284 COL16A1Q07092 1604 aaPredicted RBP18.96■□□□□ 0.63
CUX1-209ENST00000487284 MAP2P11137 1827 aaKnown RBP18.96■□□□□ 0.63
CUX1-209ENST00000487284 FBLN1P23142 703 aa18.95■□□□□ 0.62
CUX1-209ENST00000487284 MED1Q15648 1581 aaPredicted RBP18.94■□□□□ 0.62
CUX1-209ENST00000487284 ARHGEF10O15013 1369 aa18.94■□□□□ 0.62
CUX1-209ENST00000487284 CRYBG1Q9Y4K1 1723 aa18.94■□□□□ 0.62
CUX1-209ENST00000487284 SOX12O15370 315 aa18.93■□□□□ 0.62
CUX1-209ENST00000487284 PLEKHG5O94827 1062 aa18.93■□□□□ 0.62
CUX1-209ENST00000487284 SLIT3O75094 1523 aa18.93■□□□□ 0.62
CUX1-209ENST00000487284 PHRF1Q9P1Y6 1649 aaKnown RBP18.93■□□□□ 0.62
CUX1-209ENST00000487284 WDR43Q15061 677 aaKnown RBP eCLIP18.93■□□□□ 0.62
CUX1-209ENST00000487284 USP19O94966 1318 aa18.92■□□□□ 0.62
CUX1-209ENST00000487284 AATKQ6ZMQ8 1374 aa18.92■□□□□ 0.62
CUX1-209ENST00000487284 ADAMTS8Q9UP79 889 aa18.91■□□□□ 0.62
CUX1-209ENST00000487284 NFAT5O94916 1531 aa18.91■□□□□ 0.62
CUX1-209ENST00000487284 LRRC59Q96AG4 307 aaKnown RBP18.9■□□□□ 0.62
CUX1-209ENST00000487284 ABCA3Q99758 1704 aa18.9■□□□□ 0.62
CUX1-209ENST00000487284 MTHFSP49914 203 aa18.89■□□□□ 0.62
CUX1-209ENST00000487284 RRS1Q15050 365 aaKnown RBP18.89■□□□□ 0.62
CUX1-209ENST00000487284 ILDR1Q86SU0 546 aaPredicted RBP18.89■□□□□ 0.62
CUX1-209ENST00000487284 COL3A1P02461 1466 aaPredicted RBP18.89■□□□□ 0.62
CUX1-209ENST00000487284 LTN1O94822 1766 aa18.89■□□□□ 0.61
CUX1-209ENST00000487284 SMG6Q86US8 1419 aaKnown RBP18.89■□□□□ 0.61
CUX1-209ENST00000487284 CABLES1Q8TDN4 633 aa18.89■□□□□ 0.61
CUX1-209ENST00000487284 POLKQ9UBT6 870 aa18.89■□□□□ 0.61
CUX1-209ENST00000487284 EMILIN1Q9Y6C2 1016 aa18.89■□□□□ 0.61
CUX1-209ENST00000487284 PEAK1Q9H792 1746 aa18.88■□□□□ 0.61
CUX1-209ENST00000487284 GCP02774 474 aa18.87■□□□□ 0.61
CUX1-209ENST00000487284 KCNH5Q8NCM2 988 aa18.87■□□□□ 0.61
CUX1-209ENST00000487284 COL22A1Q8NFW1 1626 aaPredicted RBP18.86■□□□□ 0.61
CUX1-209ENST00000487284 PNPLA6Q8IY17 1366 aa18.86■□□□□ 0.61
CUX1-209ENST00000487284 PPM1GO15355 546 aaPredicted RBP18.85■□□□□ 0.61
CUX1-209ENST00000487284 CFAP53Q96M91 514 aa18.85■□□□□ 0.61
CUX1-209ENST00000487284 MAP3K19Q56UN5 1328 aa18.85■□□□□ 0.61
CUX1-209ENST00000487284 CDK12Q9NYV4 1490 aaPredicted RBP18.84■□□□□ 0.61
CUX1-209ENST00000487284 ZC3H6P61129 1189 aaKnown RBP18.81■□□□□ 0.6
CUX1-209ENST00000487284 NUDCQ9Y266 331 aa18.81■□□□□ 0.6
CUX1-209ENST00000487284 SENP3-EIF4A1A0A087X0R7 540 aa18.81■□□□□ 0.6
CUX1-209ENST00000487284 ZBTB7CA1YPR0 619 aa18.81■□□□□ 0.6
CUX1-209ENST00000487284 HSPA1LP34931 641 aa18.81■□□□□ 0.6
CUX1-209ENST00000487284 PDE3BQ13370 1112 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 553.2 ms