RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 MYH16Q9H6N6 1097 aa23.25■■□□□ 1.31
PDLIM7-207ENST00000486828 PRKCSHP14314 528 aaPredicted RBP23.25■■□□□ 1.31
PDLIM7-207ENST00000486828 CABP1Q9NZU7 370 aa23.25■■□□□ 1.31
PDLIM7-207ENST00000486828 PLEKHF1Q96S99 279 aa23.24■■□□□ 1.31
PDLIM7-207ENST00000486828 ATP7BP35670 1465 aa23.23■■□□□ 1.31
PDLIM7-207ENST00000486828 NRXN3Q9Y4C0 1643 aa23.22■■□□□ 1.31
PDLIM7-207ENST00000486828 PNPLA6Q8IY17 1366 aa23.22■■□□□ 1.31
PDLIM7-207ENST00000486828 U2SURPO15042 1029 aaKnown RBP23.21■■□□□ 1.31
PDLIM7-207ENST00000486828 PANK1Q8TE04 598 aa23.21■■□□□ 1.31
PDLIM7-207ENST00000486828 CLUAP1Q96AJ1 413 aa23.21■■□□□ 1.31
PDLIM7-207ENST00000486828 AEBP2Q6ZN18 517 aaPredicted RBP23.21■■□□□ 1.31
PDLIM7-207ENST00000486828 WAPLQ7Z5K2 1190 aa23.21■■□□□ 1.31
PDLIM7-207ENST00000486828 COG6Q9Y2V7 657 aa23.21■■□□□ 1.31
PDLIM7-207ENST00000486828 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.2■■□□□ 1.3
PDLIM7-207ENST00000486828 FRAT1Q92837 279 aaPredicted RBP23.2■■□□□ 1.3
PDLIM7-207ENST00000486828 AAMPQ13685 434 aa23.19■■□□□ 1.3
PDLIM7-207ENST00000486828 SETD1BQ9UPS6 1966 aaKnown RBP23.18■■□□□ 1.3
PDLIM7-207ENST00000486828 TMPOP42166 694 aaKnown RBP23.18■■□□□ 1.3
PDLIM7-207ENST00000486828 FAM161AQ3B820 660 aa23.18■■□□□ 1.3
PDLIM7-207ENST00000486828 MAPK8IP3Q9UPT6 1336 aa23.18■■□□□ 1.3
PDLIM7-207ENST00000486828 DIAPH1O60610 1272 aaKnown RBP23.18■■□□□ 1.3
PDLIM7-207ENST00000486828 IGHDP01880 384 aa23.18■■□□□ 1.3
PDLIM7-207ENST00000486828 CT47B1P0C2W7 299 aaPredicted RBP23.18■■□□□ 1.3
PDLIM7-207ENST00000486828 CDC42BPGQ6DT37 1551 aa23.17■■□□□ 1.3
PDLIM7-207ENST00000486828 PNNQ9H307 717 aaKnown RBP23.16■■□□□ 1.3
PDLIM7-207ENST00000486828 C8orf34Q49A92 452 aa23.15■■□□□ 1.3
PDLIM7-207ENST00000486828 TRIM35Q9UPQ4 493 aa23.15■■□□□ 1.3
PDLIM7-207ENST00000486828 KNDC1Q76NI1 1749 aa23.15■■□□□ 1.3
PDLIM7-207ENST00000486828 METP08581 1390 aa23.14■■□□□ 1.3
PDLIM7-207ENST00000486828 IL16Q14005 1332 aa23.14■■□□□ 1.29
PDLIM7-207ENST00000486828 RGS3P49796 1198 aa23.14■■□□□ 1.29
PDLIM7-207ENST00000486828 CPSF1Q10570 1443 aaKnown RBP23.13■■□□□ 1.29
PDLIM7-207ENST00000486828 BCL2L13Q9BXK5 485 aa23.13■■□□□ 1.29
PDLIM7-207ENST00000486828 UBR1Q8IWV7 1749 aa23.13■■□□□ 1.29
PDLIM7-207ENST00000486828 WASLO00401 505 aaPredicted RBP23.12■■□□□ 1.29
PDLIM7-207ENST00000486828 RLBP1P12271 317 aa23.12■■□□□ 1.29
PDLIM7-207ENST00000486828 DDRGK1Q96HY6 314 aa23.12■■□□□ 1.29
PDLIM7-207ENST00000486828 FAM135BQ49AJ0 1406 aa23.12■■□□□ 1.29
PDLIM7-207ENST00000486828 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.12■■□□□ 1.29
PDLIM7-207ENST00000486828 TECPR2O15040 1411 aa23.11■■□□□ 1.29
PDLIM7-207ENST00000486828 CEP170BQ9Y4F5 1589 aaPredicted RBP23.11■■□□□ 1.29
PDLIM7-207ENST00000486828 HDGFP51858 240 aaKnown RBP23.11■■□□□ 1.29
PDLIM7-207ENST00000486828 SIRT1Q96EB6 747 aa23.11■■□□□ 1.29
PDLIM7-207ENST00000486828 EDC4Q6P2E9 1401 aaKnown RBP23.11■■□□□ 1.29
PDLIM7-207ENST00000486828 TSR2Q969E8 191 aaKnown RBP23.1■■□□□ 1.29
PDLIM7-207ENST00000486828 TNNQ9UQP3 1299 aa23.1■■□□□ 1.29
PDLIM7-207ENST00000486828 PPIP5K1Q6PFW1 1433 aa23.1■■□□□ 1.29
PDLIM7-207ENST00000486828 PMFBP1Q8TBY8 1022 aa23.1■■□□□ 1.29
PDLIM7-207ENST00000486828 POLKQ9UBT6 870 aa23.1■■□□□ 1.29
PDLIM7-207ENST00000486828 CPS1P31327 1500 aa23.09■■□□□ 1.29
PDLIM7-207ENST00000486828 FCHSD2O94868 740 aa23.09■■□□□ 1.29
PDLIM7-207ENST00000486828 LRRC7Q96NW7 1537 aa23.09■■□□□ 1.29
PDLIM7-207ENST00000486828 RIPK4P57078 832 aa23.08■■□□□ 1.29
PDLIM7-207ENST00000486828 NBR1Q14596 966 aa23.08■■□□□ 1.29
PDLIM7-207ENST00000486828 EXOSC9Q06265 439 aaKnown RBP23.08■■□□□ 1.28
PDLIM7-207ENST00000486828 ZNF142P52746 1687 aaPredicted RBP23.07■■□□□ 1.28
PDLIM7-207ENST00000486828 ZKSCAN2Q63HK3 967 aa23.07■■□□□ 1.28
PDLIM7-207ENST00000486828 TXNDC2Q86VQ3 553 aa23.07■■□□□ 1.28
PDLIM7-207ENST00000486828 TMEM2Q9UHN6 1383 aa23.07■■□□□ 1.28
PDLIM7-207ENST00000486828 THEMISQ8N1K5 641 aaPredicted RBP23.06■■□□□ 1.28
PDLIM7-207ENST00000486828 MAP2P11137 1827 aaKnown RBP23.04■■□□□ 1.28
PDLIM7-207ENST00000486828 VIRMAQ69YN4 1812 aaKnown RBP23.04■■□□□ 1.28
PDLIM7-207ENST00000486828 MVPQ14764 893 aaKnown RBP23.04■■□□□ 1.28
PDLIM7-207ENST00000486828 RSPH6AQ9H0K4 717 aa23.04■■□□□ 1.28
PDLIM7-207ENST00000486828 PCDHB15Q9Y5E8 787 aa23.04■■□□□ 1.28
PDLIM7-207ENST00000486828 MON2Q7Z3U7 1717 aa23.04■■□□□ 1.28
PDLIM7-207ENST00000486828 NUDT16Q96DE0 195 aaKnown RBP23.04■■□□□ 1.28
PDLIM7-207ENST00000486828 DZIP1LQ8IYY4 767 aaKnown RBP23.03■■□□□ 1.28
PDLIM7-207ENST00000486828 SMC4Q9NTJ3 1288 aa23.03■■□□□ 1.28
PDLIM7-207ENST00000486828 AATKQ6ZMQ8 1374 aa23.03■■□□□ 1.28
PDLIM7-207ENST00000486828 PPM1GO15355 546 aaPredicted RBP23.02■■□□□ 1.28
PDLIM7-207ENST00000486828 CDK12Q9NYV4 1490 aaPredicted RBP23.02■■□□□ 1.28
PDLIM7-207ENST00000486828 FBLN1P23142 703 aa23.02■■□□□ 1.28
PDLIM7-207ENST00000486828 PRKAR2BP31323 418 aa23.02■■□□□ 1.28
PDLIM7-207ENST00000486828 FTSJ3Q8IY81 847 aaKnown RBP23.02■■□□□ 1.28
PDLIM7-207ENST00000486828 CCDC61Q9Y6R9 512 aa23.02■■□□□ 1.28
PDLIM7-207ENST00000486828 NME9Q86XW9 330 aa23.01■■□□□ 1.27
PDLIM7-207ENST00000486828 SLIT1O75093 1534 aa23.01■■□□□ 1.27
PDLIM7-207ENST00000486828 AKAP12Q02952 1782 aa23.01■■□□□ 1.27
PDLIM7-207ENST00000486828 LMTK3Q96Q04 1460 aa23■■□□□ 1.27
PDLIM7-207ENST00000486828 ARHGAP23Q9P227 1491 aa23■■□□□ 1.27
PDLIM7-207ENST00000486828 NEFMP07197 916 aa23■■□□□ 1.27
PDLIM7-207ENST00000486828 SSH1Q8WYL5 1049 aa23■■□□□ 1.27
PDLIM7-207ENST00000486828 RWDD1Q9H446 243 aaPredicted RBP23■■□□□ 1.27
PDLIM7-207ENST00000486828 HSPA2P54652 639 aa22.99■■□□□ 1.27
PDLIM7-207ENST00000486828 EMILIN1Q9Y6C2 1016 aa22.99■■□□□ 1.27
PDLIM7-207ENST00000486828 ITSN1Q15811 1721 aa22.99■■□□□ 1.27
PDLIM7-207ENST00000486828 LTKP29376 864 aa22.98■■□□□ 1.27
PDLIM7-207ENST00000486828 ADAMTS13Q76LX8 1427 aa22.98■■□□□ 1.27
PDLIM7-207ENST00000486828 TRIM27P14373 513 aa22.97■■□□□ 1.27
PDLIM7-207ENST00000486828 IL13P35225 146 aa22.97■■□□□ 1.27
PDLIM7-207ENST00000486828 NCKAP5LQ9HCH0 1330 aa22.96■■□□□ 1.27
PDLIM7-207ENST00000486828 NFE2L2Q16236 605 aa22.96■■□□□ 1.27
PDLIM7-207ENST00000486828 ATF7IPQ6VMQ6 1270 aa22.96■■□□□ 1.27
PDLIM7-207ENST00000486828 COG3Q96JB2 828 aa22.96■■□□□ 1.27
PDLIM7-207ENST00000486828 EID1Q9Y6B2 187 aa22.96■■□□□ 1.27
PDLIM7-207ENST00000486828 ROBO2Q9HCK4 1378 aa22.96■■□□□ 1.27
PDLIM7-207ENST00000486828 RTL5Q5HYW3 569 aaPredicted RBP22.96■■□□□ 1.27
PDLIM7-207ENST00000486828 ZNF692Q9BU19 519 aaPredicted RBP22.96■■□□□ 1.27
PDLIM7-207ENST00000486828 ZRANB1Q9UGI0 708 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 170.8 ms