RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-208ENST00000486159 PLCH1Q4KWH8 1693 aa13.62□□□□□ -0.23
TMEM39A-208ENST00000486159 NBPF1Q3BBV0 1214 aa13.61□□□□□ -0.23
TMEM39A-208ENST00000486159 ARHGEF28Q8N1W1 1705 aaKnown RBP13.61□□□□□ -0.23
TMEM39A-208ENST00000486159 ANKARQ7Z5J8 1434 aa13.6□□□□□ -0.23
TMEM39A-208ENST00000486159 ALS2Q96Q42 1657 aa13.59□□□□□ -0.23
TMEM39A-208ENST00000486159 SEPT12Q8IYM1 358 aa13.59□□□□□ -0.23
TMEM39A-208ENST00000486159 CCDC9Q9Y3X0 531 aaKnown RBP13.59□□□□□ -0.23
TMEM39A-208ENST00000486159 TULP4Q9NRJ4 1543 aa13.59□□□□□ -0.23
TMEM39A-208ENST00000486159 VPS72Q15906 364 aa13.58□□□□□ -0.24
TMEM39A-208ENST00000486159 DEFB132Q7Z7B7 95 aa13.58□□□□□ -0.24
TMEM39A-208ENST00000486159 NUDT16Q96DE0 195 aaKnown RBP13.58□□□□□ -0.24
TMEM39A-208ENST00000486159 PAK3O75914 559 aaPredicted RBP13.57□□□□□ -0.24
TMEM39A-208ENST00000486159 NUTM2GQ5VZR2 741 aa13.57□□□□□ -0.24
TMEM39A-208ENST00000486159 NGDNQ8NEJ9 315 aaKnown RBP13.57□□□□□ -0.24
TMEM39A-208ENST00000486159 CDK19Q9BWU1 502 aa13.57□□□□□ -0.24
TMEM39A-208ENST00000486159 BTG4Q9NY30 223 aa13.57□□□□□ -0.24
TMEM39A-208ENST00000486159 ZRANB1Q9UGI0 708 aa13.57□□□□□ -0.24
TMEM39A-208ENST00000486159 CLSPNQ9HAW4 1339 aa13.57□□□□□ -0.24
TMEM39A-208ENST00000486159 ARHGEF10O15013 1369 aa13.57□□□□□ -0.24
TMEM39A-208ENST00000486159 NRAPQ86VF7 1730 aa13.56□□□□□ -0.24
TMEM39A-208ENST00000486159 CRYBG1Q9Y4K1 1723 aa13.56□□□□□ -0.24
TMEM39A-208ENST00000486159 NWD2Q9ULI1 1742 aa13.56□□□□□ -0.24
TMEM39A-208ENST00000486159 ATP7BP35670 1465 aa13.55□□□□□ -0.24
TMEM39A-208ENST00000486159 FAM98CQ17RN3 349 aaKnown RBP13.55□□□□□ -0.24
TMEM39A-208ENST00000486159 FAM182BQ5T319 152 aa13.55□□□□□ -0.24
TMEM39A-208ENST00000486159 GPRASP1Q5JY77 1395 aa13.55□□□□□ -0.24
TMEM39A-208ENST00000486159 ONECUT3O60422 494 aaPredicted RBP13.54□□□□□ -0.24
TMEM39A-208ENST00000486159 MYCNP04198 464 aaPredicted RBP13.54□□□□□ -0.24
TMEM39A-208ENST00000486159 CHRNA2Q15822 529 aa13.54□□□□□ -0.24
TMEM39A-208ENST00000486159 SIN3AQ96ST3 1273 aa13.54□□□□□ -0.24
TMEM39A-208ENST00000486159 A0A0G2JS52 829 aa13.52□□□□□ -0.25
TMEM39A-208ENST00000486159 MYT1Q01538 1121 aa13.52□□□□□ -0.25
TMEM39A-208ENST00000486159 KRT27Q7Z3Y8 459 aa13.52□□□□□ -0.25
TMEM39A-208ENST00000486159 ACEP12821 1306 aa13.52□□□□□ -0.25
TMEM39A-208ENST00000486159 ZC3H6P61129 1189 aaKnown RBP13.51□□□□□ -0.25
TMEM39A-208ENST00000486159 NBPF8Q3BBV2 869 aa13.51□□□□□ -0.25
TMEM39A-208ENST00000486159 STAC3Q96MF2 364 aa13.51□□□□□ -0.25
TMEM39A-208ENST00000486159 COL14A1Q05707 1796 aaKnown RBP13.5□□□□□ -0.25
TMEM39A-208ENST00000486159 BLMP54132 1417 aaPredicted RBP13.5□□□□□ -0.25
TMEM39A-208ENST00000486159 EIF3AQ14152 1382 aaKnown RBP13.5□□□□□ -0.25
TMEM39A-208ENST00000486159 KIAA0232Q92628 1395 aa13.5□□□□□ -0.25
TMEM39A-208ENST00000486159 CCDC125Q86Z20 511 aa13.5□□□□□ -0.25
TMEM39A-208ENST00000486159 CABP2Q9NPB3 220 aa13.5□□□□□ -0.25
TMEM39A-208ENST00000486159 U3KPZ7 1027 aaPredicted RBP13.5□□□□□ -0.25
TMEM39A-208ENST00000486159 ITSN1Q15811 1721 aa13.5□□□□□ -0.25
TMEM39A-208ENST00000486159 TOPAZ1Q8N9V7 1692 aa13.5□□□□□ -0.25
TMEM39A-208ENST00000486159 L3MBTL2Q969R5 705 aa13.49□□□□□ -0.25
TMEM39A-208ENST00000486159 PRDM11Q9NQV5 511 aa13.49□□□□□ -0.25
TMEM39A-208ENST00000486159 KIAA1210Q9ULL0 1709 aa13.49□□□□□ -0.25
TMEM39A-208ENST00000486159 PHRF1Q9P1Y6 1649 aaKnown RBP13.49□□□□□ -0.25
TMEM39A-208ENST00000486159 SPATA31A5Q5VU36 1347 aa13.48□□□□□ -0.25
TMEM39A-208ENST00000486159 SPATA31A7Q8IWB4 1347 aa13.48□□□□□ -0.25
TMEM39A-208ENST00000486159 RNF39Q9H2S5 420 aa13.48□□□□□ -0.25
TMEM39A-208ENST00000486159 STRN4Q9NRL3 753 aa13.48□□□□□ -0.25
TMEM39A-208ENST00000486159 CCDC61Q9Y6R9 512 aa13.48□□□□□ -0.25
TMEM39A-208ENST00000486159 POLR3AO14802 1390 aaPredicted RBP13.47□□□□□ -0.25
TMEM39A-208ENST00000486159 PLEKHG3A1L390 1219 aa13.47□□□□□ -0.25
TMEM39A-208ENST00000486159 NEUROD1Q13562 356 aa13.47□□□□□ -0.25
TMEM39A-208ENST00000486159 SRPK2P78362 688 aaKnown RBP13.46□□□□□ -0.25
TMEM39A-208ENST00000486159 USP35Q9P2H5 1018 aa13.46□□□□□ -0.25
TMEM39A-208ENST00000486159 CENPJQ9HC77 1338 aaPredicted RBP13.45□□□□□ -0.26
TMEM39A-208ENST00000486159 ABTB2Q8N961 1025 aa13.45□□□□□ -0.26
TMEM39A-208ENST00000486159 PPIP5K1Q6PFW1 1433 aa13.45□□□□□ -0.26
TMEM39A-208ENST00000486159 SPATA31A1Q5TZJ5 1347 aa13.44□□□□□ -0.26
TMEM39A-208ENST00000486159 QRICH2Q9H0J4 1663 aa13.44□□□□□ -0.26
TMEM39A-208ENST00000486159 PSDA5PKW4 1024 aaPredicted RBP13.44□□□□□ -0.26
TMEM39A-208ENST00000486159 EN1Q05925 392 aaPredicted RBP13.44□□□□□ -0.26
TMEM39A-208ENST00000486159 CABP1Q9NZU7 370 aa13.44□□□□□ -0.26
TMEM39A-208ENST00000486159 THSD7AQ9UPZ6 1657 aa13.44□□□□□ -0.26
TMEM39A-208ENST00000486159 CAMTA1Q9Y6Y1 1673 aa13.44□□□□□ -0.26
TMEM39A-208ENST00000486159 SF3B2Q13435 895 aaKnown RBP13.43□□□□□ -0.26
TMEM39A-208ENST00000486159 LARP1Q6PKG0 1096 aaKnown RBP13.43□□□□□ -0.26
TMEM39A-208ENST00000486159 NRKQ7Z2Y5 1582 aa13.43□□□□□ -0.26
TMEM39A-208ENST00000486159 ZBTB7CA1YPR0 619 aa13.41□□□□□ -0.26
TMEM39A-208ENST00000486159 YY1P25490 414 aa13.41□□□□□ -0.26
TMEM39A-208ENST00000486159 TRPM1Q7Z4N2 1603 aa13.41□□□□□ -0.26
TMEM39A-208ENST00000486159 USP19O94966 1318 aa13.4□□□□□ -0.26
TMEM39A-208ENST00000486159 TRIM37O94972 964 aa13.4□□□□□ -0.26
TMEM39A-208ENST00000486159 GCP02774 474 aa13.4□□□□□ -0.26
TMEM39A-208ENST00000486159 EVA1CP58658 441 aa13.4□□□□□ -0.26
TMEM39A-208ENST00000486159 LMO7Q8WWI1 1683 aa13.4□□□□□ -0.26
TMEM39A-208ENST00000486159 SSH2Q76I76 1423 aa13.39□□□□□ -0.27
TMEM39A-208ENST00000486159 BAG6P46379 1132 aa13.39□□□□□ -0.27
TMEM39A-208ENST00000486159 EZH2Q15910 746 aaKnown RBP13.39□□□□□ -0.27
TMEM39A-208ENST00000486159 TNS1Q9HBL0 1735 aaKnown RBP13.39□□□□□ -0.27
TMEM39A-208ENST00000486159 NLRP6P59044 892 aa13.37□□□□□ -0.27
TMEM39A-208ENST00000486159 SAMD1Q6SPF0 538 aaPredicted RBP13.37□□□□□ -0.27
TMEM39A-208ENST00000486159 NLRP13Q86W25 1043 aa13.37□□□□□ -0.27
TMEM39A-208ENST00000486159 USP6P35125 1406 aa13.37□□□□□ -0.27
TMEM39A-208ENST00000486159 RGPD1P0DJD0 1748 aa13.36□□□□□ -0.27
TMEM39A-208ENST00000486159 CPDO75976 1380 aa13.36□□□□□ -0.27
TMEM39A-208ENST00000486159 SENP3-EIF4A1A0A087X0R7 540 aa13.36□□□□□ -0.27
TMEM39A-208ENST00000486159 SOX12O15370 315 aa13.36□□□□□ -0.27
TMEM39A-208ENST00000486159 C1QBPQ07021 282 aaKnown RBP13.36□□□□□ -0.27
TMEM39A-208ENST00000486159 AXIN2Q9Y2T1 843 aa13.36□□□□□ -0.27
TMEM39A-208ENST00000486159 PIK3C2AO00443 1686 aa13.36□□□□□ -0.27
TMEM39A-208ENST00000486159 ROCK2O75116 1388 aaKnown RBP13.35□□□□□ -0.27
TMEM39A-208ENST00000486159 R3HDM1Q15032 1099 aaKnown RBP13.35□□□□□ -0.27
TMEM39A-208ENST00000486159 BARGINQ6ZT62 677 aa13.35□□□□□ -0.27
TMEM39A-208ENST00000486159 COL5A2P05997 1499 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms