RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 HSPA5P11021 654 aaKnown RBP11.48□□□□□ -0.57
SF3A1-208ENST00000485618 TMC1Q8TDI8 760 aa11.48□□□□□ -0.57
SF3A1-208ENST00000485618 TESK2Q96S53 571 aa11.48□□□□□ -0.57
SF3A1-208ENST00000485618 TERF2IPQ9NYB0 399 aa11.48□□□□□ -0.57
SF3A1-208ENST00000485618 NINLQ9Y2I6 1382 aa11.48□□□□□ -0.57
SF3A1-208ENST00000485618 KRT28Q7Z3Y7 464 aa11.47□□□□□ -0.57
SF3A1-208ENST00000485618 HDGFL2Q7Z4V5 671 aaPredicted RBP11.47□□□□□ -0.57
SF3A1-208ENST00000485618 PMFBP1Q8TBY8 1022 aa11.47□□□□□ -0.57
SF3A1-208ENST00000485618 CABP1Q9NZU7 370 aa11.47□□□□□ -0.57
SF3A1-208ENST00000485618 ZRANB1Q9UGI0 708 aa11.47□□□□□ -0.57
SF3A1-208ENST00000485618 GLI3P10071 1580 aa11.46□□□□□ -0.57
SF3A1-208ENST00000485618 BRD4O60885 1362 aaPredicted RBP11.46□□□□□ -0.57
SF3A1-208ENST00000485618 GJD4Q96KN9 370 aaPredicted RBP11.46□□□□□ -0.57
SF3A1-208ENST00000485618 SLIT2O94813 1529 aa11.45□□□□□ -0.58
SF3A1-208ENST00000485618 PPIP5K1Q6PFW1 1433 aa11.45□□□□□ -0.58
SF3A1-208ENST00000485618 ACEP12821 1306 aa11.45□□□□□ -0.58
SF3A1-208ENST00000485618 SPATA31A3Q5VYP0 1347 aa11.45□□□□□ -0.58
SF3A1-208ENST00000485618 PAK3O75914 559 aaPredicted RBP11.45□□□□□ -0.58
SF3A1-208ENST00000485618 HAP1P54257 671 aaPredicted RBP11.45□□□□□ -0.58
SF3A1-208ENST00000485618 TNS3Q68CZ2 1445 aa11.44□□□□□ -0.58
SF3A1-208ENST00000485618 PRR36Q9H6K5 1346 aa11.44□□□□□ -0.58
SF3A1-208ENST00000485618 PLCH1Q4KWH8 1693 aa11.44□□□□□ -0.58
SF3A1-208ENST00000485618 LMOD2Q6P5Q4 547 aa11.44□□□□□ -0.58
SF3A1-208ENST00000485618 CCDC125Q86Z20 511 aa11.44□□□□□ -0.58
SF3A1-208ENST00000485618 UNC5CLQ8IV45 518 aa11.44□□□□□ -0.58
SF3A1-208ENST00000485618 POLR3GLQ9BT43 218 aa11.44□□□□□ -0.58
SF3A1-208ENST00000485618 ABCA3Q99758 1704 aa11.43□□□□□ -0.58
SF3A1-208ENST00000485618 PLEKHG5O94827 1062 aa11.43□□□□□ -0.58
SF3A1-208ENST00000485618 ITSN1Q15811 1721 aa11.43□□□□□ -0.58
SF3A1-208ENST00000485618 BLMP54132 1417 aaPredicted RBP11.43□□□□□ -0.58
SF3A1-208ENST00000485618 EP400Q96L91 3159 aa11.42□□□□□ -0.58
SF3A1-208ENST00000485618 SBNO1A3KN83 1393 aa11.42□□□□□ -0.58
SF3A1-208ENST00000485618 ARHGEF10O15013 1369 aa11.42□□□□□ -0.58
SF3A1-208ENST00000485618 ATP7BP35670 1465 aa11.42□□□□□ -0.58
SF3A1-208ENST00000485618 POLR3AO14802 1390 aaPredicted RBP11.41□□□□□ -0.58
SF3A1-208ENST00000485618 RGPD8O14715 1765 aaPredicted RBP11.41□□□□□ -0.58
SF3A1-208ENST00000485618 SLC12A5Q9H2X9 1139 aa11.41□□□□□ -0.58
SF3A1-208ENST00000485618 CCDC9Q9Y3X0 531 aaKnown RBP11.41□□□□□ -0.58
SF3A1-208ENST00000485618 BRWD3Q6RI45 1802 aa11.41□□□□□ -0.58
SF3A1-208ENST00000485618 NWD2Q9ULI1 1742 aa11.4□□□□□ -0.58
SF3A1-208ENST00000485618 ABTB2Q8N961 1025 aa11.4□□□□□ -0.58
SF3A1-208ENST00000485618 CABLES1Q8TDN4 633 aa11.4□□□□□ -0.58
SF3A1-208ENST00000485618 KTN1Q86UP2 1357 aaKnown RBP11.4□□□□□ -0.59
SF3A1-208ENST00000485618 TTC21AQ8NDW8 1320 aa11.39□□□□□ -0.59
SF3A1-208ENST00000485618 SF3B2Q13435 895 aaKnown RBP11.39□□□□□ -0.59
SF3A1-208ENST00000485618 NLRP13Q86W25 1043 aa11.39□□□□□ -0.59
SF3A1-208ENST00000485618 A0A0G2JS52 829 aa11.38□□□□□ -0.59
SF3A1-208ENST00000485618 MYT1Q01538 1121 aa11.38□□□□□ -0.59
SF3A1-208ENST00000485618 VPS72Q15906 364 aa11.38□□□□□ -0.59
SF3A1-208ENST00000485618 SEPT12Q8IYM1 358 aa11.38□□□□□ -0.59
SF3A1-208ENST00000485618 DEFB132Q7Z7B7 95 aa11.37□□□□□ -0.59
SF3A1-208ENST00000485618 ANKRD36BQ8N2N9 1353 aa11.37□□□□□ -0.59
SF3A1-208ENST00000485618 NRAPQ86VF7 1730 aa11.36□□□□□ -0.59
SF3A1-208ENST00000485618 TRPM3Q9HCF6 1732 aaPredicted RBP11.36□□□□□ -0.59
SF3A1-208ENST00000485618 NLRP6P59044 892 aa11.36□□□□□ -0.59
SF3A1-208ENST00000485618 TTC21BQ7Z4L5 1316 aa11.35□□□□□ -0.59
SF3A1-208ENST00000485618 USP6P35125 1406 aa11.35□□□□□ -0.59
SF3A1-208ENST00000485618 KRT27Q7Z3Y8 459 aa11.35□□□□□ -0.59
SF3A1-208ENST00000485618 KCNH5Q8NCM2 988 aa11.35□□□□□ -0.59
SF3A1-208ENST00000485618 CPSF1Q10570 1443 aaKnown RBP11.35□□□□□ -0.59
SF3A1-208ENST00000485618 EDC4Q6P2E9 1401 aaKnown RBP11.35□□□□□ -0.59
SF3A1-208ENST00000485618 TOPAZ1Q8N9V7 1692 aa11.34□□□□□ -0.59
SF3A1-208ENST00000485618 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.34□□□□□ -0.59
SF3A1-208ENST00000485618 LRP5O75197 1615 aa11.34□□□□□ -0.59
SF3A1-208ENST00000485618 CGNL1Q0VF96 1302 aa11.34□□□□□ -0.59
SF3A1-208ENST00000485618 KIF7Q2M1P5 1343 aa11.34□□□□□ -0.59
SF3A1-208ENST00000485618 COL14A1Q05707 1796 aaKnown RBP11.33□□□□□ -0.59
SF3A1-208ENST00000485618 ALS2Q96Q42 1657 aa11.33□□□□□ -0.6
SF3A1-208ENST00000485618 FAM83GA6ND36 823 aa11.33□□□□□ -0.6
SF3A1-208ENST00000485618 COG3Q96JB2 828 aa11.33□□□□□ -0.6
SF3A1-208ENST00000485618 PANK3Q9H999 370 aa11.33□□□□□ -0.6
SF3A1-208ENST00000485618 KNSTRNQ9Y448 316 aa11.33□□□□□ -0.6
SF3A1-208ENST00000485618 A0A1W2PP64 1363 aa11.32□□□□□ -0.6
SF3A1-208ENST00000485618 FAM98CQ17RN3 349 aaKnown RBP11.32□□□□□ -0.6
SF3A1-208ENST00000485618 BTG4Q9NY30 223 aa11.32□□□□□ -0.6
SF3A1-208ENST00000485618 CCDC7Q96M83 1385 aa11.31□□□□□ -0.6
SF3A1-208ENST00000485618 C11orf95C9JLR9 678 aaPredicted RBP11.31□□□□□ -0.6
SF3A1-208ENST00000485618 ONECUT3O60422 494 aaPredicted RBP11.31□□□□□ -0.6
SF3A1-208ENST00000485618 BAG6P46379 1132 aa11.31□□□□□ -0.6
SF3A1-208ENST00000485618 NUTM2GQ5VZR2 741 aa11.31□□□□□ -0.6
SF3A1-208ENST00000485618 RGPD1P0DJD0 1748 aa11.31□□□□□ -0.6
SF3A1-208ENST00000485618 CRYBG1Q9Y4K1 1723 aa11.31□□□□□ -0.6
SF3A1-208ENST00000485618 GCP02774 474 aa11.3□□□□□ -0.6
SF3A1-208ENST00000485618 SSH2Q76I76 1423 aa11.29□□□□□ -0.6
SF3A1-208ENST00000485618 PSDA5PKW4 1024 aaPredicted RBP11.29□□□□□ -0.6
SF3A1-208ENST00000485618 THSD7AQ9UPZ6 1657 aa11.29□□□□□ -0.6
SF3A1-208ENST00000485618 WASHC2AQ641Q2 1341 aa11.29□□□□□ -0.6
SF3A1-208ENST00000485618 USP31Q70CQ4 1352 aa11.28□□□□□ -0.6
SF3A1-208ENST00000485618 NME9Q86XW9 330 aa11.28□□□□□ -0.6
SF3A1-208ENST00000485618 PRDM11Q9NQV5 511 aa11.28□□□□□ -0.6
SF3A1-208ENST00000485618 AKAP12Q02952 1782 aa11.28□□□□□ -0.6
SF3A1-208ENST00000485618 PHRF1Q9P1Y6 1649 aaKnown RBP11.27□□□□□ -0.6
SF3A1-208ENST00000485618 CD163L1Q9NR16 1453 aa11.27□□□□□ -0.6
SF3A1-208ENST00000485618 TNS1Q9HBL0 1735 aaKnown RBP11.27□□□□□ -0.61
SF3A1-208ENST00000485618 FYB1O15117 783 aa11.27□□□□□ -0.61
SF3A1-208ENST00000485618 EVA1CP58658 441 aa11.27□□□□□ -0.61
SF3A1-208ENST00000485618 FAM182BQ5T319 152 aa11.27□□□□□ -0.61
SF3A1-208ENST00000485618 CARD14Q9BXL6 1004 aa11.27□□□□□ -0.61
SF3A1-208ENST00000485618 USP19O94966 1318 aa11.27□□□□□ -0.61
SF3A1-208ENST00000485618 SPATA31A5Q5VU36 1347 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms