RNA–Protein interactions for RNA: ENST00000484309.5

MSH5-216, Transcript of mutS homolog 5, humanhuman

TSL 5

Gene MSH5, Length 857 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-216ENST00000484309 AKAP12Q02952 1782 aa17.48■□□□□ 0.39
MSH5-216ENST00000484309 NWD2Q9ULI1 1742 aa17.48■□□□□ 0.39
MSH5-216ENST00000484309 FNBP4Q8N3X1 1017 aaPredicted RBP17.48■□□□□ 0.39
MSH5-216ENST00000484309 BCL9LQ86UU0 1499 aa17.48■□□□□ 0.39
MSH5-216ENST00000484309 EVC2Q86UK5 1308 aa17.47■□□□□ 0.39
MSH5-216ENST00000484309 RGS12O14924 1447 aa17.47■□□□□ 0.39
MSH5-216ENST00000484309 ATRNO75882 1429 aa17.47■□□□□ 0.39
MSH5-216ENST00000484309 PLEKHG3A1L390 1219 aa17.46■□□□□ 0.39
MSH5-216ENST00000484309 RBM6P78332 1123 aaKnown RBP17.46■□□□□ 0.39
MSH5-216ENST00000484309 NUTM2GQ5VZR2 741 aa17.46■□□□□ 0.39
MSH5-216ENST00000484309 NRAPQ86VF7 1730 aa17.46■□□□□ 0.39
MSH5-216ENST00000484309 SLIT2O94813 1529 aa17.46■□□□□ 0.39
MSH5-216ENST00000484309 CDK12Q9NYV4 1490 aaPredicted RBP17.45■□□□□ 0.38
MSH5-216ENST00000484309 TRPC5Q9UL62 973 aaPredicted RBP17.45■□□□□ 0.38
MSH5-216ENST00000484309 COL14A1Q05707 1796 aaKnown RBP17.45■□□□□ 0.38
MSH5-216ENST00000484309 CABP1Q9NZU7 370 aa17.44■□□□□ 0.38
MSH5-216ENST00000484309 GLI3P10071 1580 aa17.43■□□□□ 0.38
MSH5-216ENST00000484309 MON2Q7Z3U7 1717 aa17.41■□□□□ 0.38
MSH5-216ENST00000484309 NRKQ7Z2Y5 1582 aa17.41■□□□□ 0.38
MSH5-216ENST00000484309 BRWD3Q6RI45 1802 aa17.41■□□□□ 0.38
MSH5-216ENST00000484309 PIK3C2AO00443 1686 aa17.41■□□□□ 0.38
MSH5-216ENST00000484309 SBNO2Q9Y2G9 1366 aa17.4■□□□□ 0.38
MSH5-216ENST00000484309 USP6P35125 1406 aa17.4■□□□□ 0.38
MSH5-216ENST00000484309 FAM83GA6ND36 823 aa17.4■□□□□ 0.38
MSH5-216ENST00000484309 UNC5CLQ8IV45 518 aa17.4■□□□□ 0.38
MSH5-216ENST00000484309 ABTB2Q8N961 1025 aa17.39■□□□□ 0.37
MSH5-216ENST00000484309 CCER1Q8TC90 406 aaPredicted RBP17.38■□□□□ 0.37
MSH5-216ENST00000484309 ATAD2Q6PL18 1390 aa17.38■□□□□ 0.37
MSH5-216ENST00000484309 GJD4Q96KN9 370 aaPredicted RBP17.37■□□□□ 0.37
MSH5-216ENST00000484309 CLSPNQ9HAW4 1339 aa17.37■□□□□ 0.37
MSH5-216ENST00000484309 KIAA0232Q92628 1395 aa17.37■□□□□ 0.37
MSH5-216ENST00000484309 ST20-MTHFSA0A0A6YYL1 179 aa17.36■□□□□ 0.37
MSH5-216ENST00000484309 ZC3H6P61129 1189 aaKnown RBP17.36■□□□□ 0.37
MSH5-216ENST00000484309 PRDM11Q9NQV5 511 aa17.36■□□□□ 0.37
MSH5-216ENST00000484309 BTG4Q9NY30 223 aa17.36■□□□□ 0.37
MSH5-216ENST00000484309 CCDC9Q9Y3X0 531 aaKnown RBP17.36■□□□□ 0.37
MSH5-216ENST00000484309 CHRNA2Q15822 529 aa17.35■□□□□ 0.37
MSH5-216ENST00000484309 SSH2Q76I76 1423 aa17.34■□□□□ 0.37
MSH5-216ENST00000484309 USP47Q96K76 1375 aa17.34■□□□□ 0.37
MSH5-216ENST00000484309 USP19O94966 1318 aa17.33■□□□□ 0.36
MSH5-216ENST00000484309 VPS72Q15906 364 aa17.33■□□□□ 0.36
MSH5-216ENST00000484309 TMC1Q8TDI8 760 aa17.33■□□□□ 0.36
MSH5-216ENST00000484309 CD163L1Q9NR16 1453 aa17.32■□□□□ 0.36
MSH5-216ENST00000484309 CPSF1Q10570 1443 aaKnown RBP17.32■□□□□ 0.36
MSH5-216ENST00000484309 BRD4O60885 1362 aaPredicted RBP17.32■□□□□ 0.36
MSH5-216ENST00000484309 KTN1Q86UP2 1357 aaKnown RBP17.32■□□□□ 0.36
MSH5-216ENST00000484309 NLRP13Q86W25 1043 aa17.32■□□□□ 0.36
MSH5-216ENST00000484309 UPF1Q92900 1129 aaKnown RBP eCLIP17.32■□□□□ 0.36
MSH5-216ENST00000484309 TESK2Q96S53 571 aa17.32■□□□□ 0.36
MSH5-216ENST00000484309 RGPD5Q99666 1765 aa17.32■□□□□ 0.36
MSH5-216ENST00000484309 LMO7Q8WWI1 1683 aa17.32■□□□□ 0.36
MSH5-216ENST00000484309 SLIT3O75094 1523 aa17.31■□□□□ 0.36
MSH5-216ENST00000484309 TTC21BQ7Z4L5 1316 aa17.31■□□□□ 0.36
MSH5-216ENST00000484309 ZBTB7CA1YPR0 619 aa17.31■□□□□ 0.36
MSH5-216ENST00000484309 NLRP6P59044 892 aa17.31■□□□□ 0.36
MSH5-216ENST00000484309 TIMELESSQ9UNS1 1208 aa17.3■□□□□ 0.36
MSH5-216ENST00000484309 ZNF692Q9BU19 519 aaPredicted RBP17.29■□□□□ 0.36
MSH5-216ENST00000484309 SLC12A5Q9H2X9 1139 aa17.29■□□□□ 0.36
MSH5-216ENST00000484309 STRN4Q9NRL3 753 aa17.29■□□□□ 0.36
MSH5-216ENST00000484309 CAMTA1Q9Y6Y1 1673 aa17.29■□□□□ 0.36
MSH5-216ENST00000484309 GCP02774 474 aa17.28■□□□□ 0.36
MSH5-216ENST00000484309 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.28■□□□□ 0.36
MSH5-216ENST00000484309 USP54Q70EL1 1684 aa17.28■□□□□ 0.36
MSH5-216ENST00000484309 COL18A1P39060 1754 aa17.28■□□□□ 0.36
MSH5-216ENST00000484309 A0A0G2JS52 829 aa17.27■□□□□ 0.36
MSH5-216ENST00000484309 SOX12O15370 315 aa17.27■□□□□ 0.36
MSH5-216ENST00000484309 MYT1Q01538 1121 aa17.27■□□□□ 0.36
MSH5-216ENST00000484309 LTN1O94822 1766 aa17.27■□□□□ 0.35
MSH5-216ENST00000484309 A0A1W2PP64 1363 aa17.27■□□□□ 0.35
MSH5-216ENST00000484309 CPDO75976 1380 aa17.27■□□□□ 0.35
MSH5-216ENST00000484309 TTC21AQ8NDW8 1320 aa17.26■□□□□ 0.35
MSH5-216ENST00000484309 SEPT12Q8IYM1 358 aa17.26■□□□□ 0.35
MSH5-216ENST00000484309 ZRANB1Q9UGI0 708 aa17.26■□□□□ 0.35
MSH5-216ENST00000484309 FAM98CQ17RN3 349 aaKnown RBP17.25■□□□□ 0.35
MSH5-216ENST00000484309 HDGFL2Q7Z4V5 671 aaPredicted RBP17.25■□□□□ 0.35
MSH5-216ENST00000484309 MYOM1P52179 1685 aa17.25■□□□□ 0.35
MSH5-216ENST00000484309 THSD7AQ9UPZ6 1657 aa17.25■□□□□ 0.35
MSH5-216ENST00000484309 SPATA31A5Q5VU36 1347 aa17.24■□□□□ 0.35
MSH5-216ENST00000484309 SPATA31A7Q8IWB4 1347 aa17.24■□□□□ 0.35
MSH5-216ENST00000484309 NME9Q86XW9 330 aa17.24■□□□□ 0.35
MSH5-216ENST00000484309 NFAT5O94916 1531 aa17.23■□□□□ 0.35
MSH5-216ENST00000484309 TMF1P82094 1093 aa17.23■□□□□ 0.35
MSH5-216ENST00000484309 EDC4Q6P2E9 1401 aaKnown RBP17.22■□□□□ 0.35
MSH5-216ENST00000484309 EVA1CP58658 441 aa17.22■□□□□ 0.35
MSH5-216ENST00000484309 PUS7Q96PZ0 661 aaKnown RBP17.22■□□□□ 0.35
MSH5-216ENST00000484309 TERF2IPQ9NYB0 399 aa17.22■□□□□ 0.35
MSH5-216ENST00000484309 USP35Q9P2H5 1018 aa17.22■□□□□ 0.35
MSH5-216ENST00000484309 COL5A2P05997 1499 aaPredicted RBP17.22■□□□□ 0.35
MSH5-216ENST00000484309 WNK3Q9BYP7 1800 aa17.21■□□□□ 0.35
MSH5-216ENST00000484309 LARP1Q6PKG0 1096 aaKnown RBP17.21■□□□□ 0.35
MSH5-216ENST00000484309 KIF20BQ96Q89 1820 aa17.21■□□□□ 0.35
MSH5-216ENST00000484309 SPATA31A1Q5TZJ5 1347 aa17.21■□□□□ 0.34
MSH5-216ENST00000484309 ONECUT3O60422 494 aaPredicted RBP17.2■□□□□ 0.34
MSH5-216ENST00000484309 NINLQ9Y2I6 1382 aa17.19■□□□□ 0.34
MSH5-216ENST00000484309 EP400Q96L91 3159 aa17.18■□□□□ 0.34
MSH5-216ENST00000484309 AATKQ6ZMQ8 1374 aa17.18■□□□□ 0.34
MSH5-216ENST00000484309 USP31Q70CQ4 1352 aa17.18■□□□□ 0.34
MSH5-216ENST00000484309 SLC24A1O60721 1099 aa17.18■□□□□ 0.34
MSH5-216ENST00000484309 KRT27Q7Z3Y8 459 aa17.18■□□□□ 0.34
MSH5-216ENST00000484309 KCNH5Q8NCM2 988 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms