RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 PHRF1Q9P1Y6 1649 aaKnown RBP17.5■□□□□ 0.39
SQSTM1-207ENST00000481335 CENPJQ9HC77 1338 aaPredicted RBP17.49■□□□□ 0.39
SQSTM1-207ENST00000481335 BRWD3Q6RI45 1802 aa17.49■□□□□ 0.39
SQSTM1-207ENST00000481335 CDK19Q9BWU1 502 aa17.49■□□□□ 0.39
SQSTM1-207ENST00000481335 PLEKHG3A1L390 1219 aa17.48■□□□□ 0.39
SQSTM1-207ENST00000481335 NBPF1Q3BBV0 1214 aa17.48■□□□□ 0.39
SQSTM1-207ENST00000481335 BRD4O60885 1362 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-207ENST00000481335 ONECUT3O60422 494 aaPredicted RBP17.46■□□□□ 0.39
SQSTM1-207ENST00000481335 L3MBTL2Q969R5 705 aa17.46■□□□□ 0.39
SQSTM1-207ENST00000481335 FAM83GA6ND36 823 aa17.45■□□□□ 0.38
SQSTM1-207ENST00000481335 PAK3O75914 559 aaPredicted RBP17.44■□□□□ 0.38
SQSTM1-207ENST00000481335 ACEP12821 1306 aa17.44■□□□□ 0.38
SQSTM1-207ENST00000481335 PPIP5K1Q6PFW1 1433 aa17.43■□□□□ 0.38
SQSTM1-207ENST00000481335 NRKQ7Z2Y5 1582 aa17.42■□□□□ 0.38
SQSTM1-207ENST00000481335 BLMP54132 1417 aaPredicted RBP17.42■□□□□ 0.38
SQSTM1-207ENST00000481335 NBPF8Q3BBV2 869 aa17.42■□□□□ 0.38
SQSTM1-207ENST00000481335 BTG4Q9NY30 223 aa17.42■□□□□ 0.38
SQSTM1-207ENST00000481335 ROCK2O75116 1388 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-207ENST00000481335 SRPK2P78362 688 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-207ENST00000481335 SEPT12Q8IYM1 358 aa17.4■□□□□ 0.38
SQSTM1-207ENST00000481335 PRDM11Q9NQV5 511 aa17.4■□□□□ 0.38
SQSTM1-207ENST00000481335 CCDC9Q9Y3X0 531 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-207ENST00000481335 THSD7AQ9UPZ6 1657 aa17.39■□□□□ 0.37
SQSTM1-207ENST00000481335 PLEKHG5O94827 1062 aa17.39■□□□□ 0.37
SQSTM1-207ENST00000481335 SIN3AQ96ST3 1273 aa17.39■□□□□ 0.37
SQSTM1-207ENST00000481335 EVC2Q86UK5 1308 aa17.39■□□□□ 0.37
SQSTM1-207ENST00000481335 USP19O94966 1318 aa17.38■□□□□ 0.37
SQSTM1-207ENST00000481335 CPDO75976 1380 aa17.38■□□□□ 0.37
SQSTM1-207ENST00000481335 KIAA0232Q92628 1395 aa17.38■□□□□ 0.37
SQSTM1-207ENST00000481335 SBNO2Q9Y2G9 1366 aa17.38■□□□□ 0.37
SQSTM1-207ENST00000481335 LMO7Q8WWI1 1683 aa17.37■□□□□ 0.37
SQSTM1-207ENST00000481335 KRT27Q7Z3Y8 459 aa17.37■□□□□ 0.37
SQSTM1-207ENST00000481335 SPATA31A5Q5VU36 1347 aa17.37■□□□□ 0.37
SQSTM1-207ENST00000481335 SPATA31A7Q8IWB4 1347 aa17.37■□□□□ 0.37
SQSTM1-207ENST00000481335 USP6P35125 1406 aa17.37■□□□□ 0.37
SQSTM1-207ENST00000481335 AKAP12Q02952 1782 aa17.36■□□□□ 0.37
SQSTM1-207ENST00000481335 ABTB2Q8N961 1025 aa17.36■□□□□ 0.37
SQSTM1-207ENST00000481335 NEUROD1Q13562 356 aa17.35■□□□□ 0.37
SQSTM1-207ENST00000481335 NLRP13Q86W25 1043 aa17.35■□□□□ 0.37
SQSTM1-207ENST00000481335 CABP2Q9NPB3 220 aa17.35■□□□□ 0.37
SQSTM1-207ENST00000481335 RGPD1P0DJD0 1748 aa17.34■□□□□ 0.37
SQSTM1-207ENST00000481335 SLIT3O75094 1523 aa17.33■□□□□ 0.37
SQSTM1-207ENST00000481335 SF3B2Q13435 895 aaKnown RBP17.33■□□□□ 0.36
SQSTM1-207ENST00000481335 FAM98CQ17RN3 349 aaKnown RBP17.33■□□□□ 0.36
SQSTM1-207ENST00000481335 SSH2Q76I76 1423 aa17.32■□□□□ 0.36
SQSTM1-207ENST00000481335 SPATA31A1Q5TZJ5 1347 aa17.32■□□□□ 0.36
SQSTM1-207ENST00000481335 PIK3C2AO00443 1686 aa17.32■□□□□ 0.36
SQSTM1-207ENST00000481335 TONSLQ96HA7 1378 aa17.31■□□□□ 0.36
SQSTM1-207ENST00000481335 A0A0G2JS52 829 aa17.31■□□□□ 0.36
SQSTM1-207ENST00000481335 MYT1Q01538 1121 aa17.31■□□□□ 0.36
SQSTM1-207ENST00000481335 ZNF692Q9BU19 519 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-207ENST00000481335 CABP1Q9NZU7 370 aa17.31■□□□□ 0.36
SQSTM1-207ENST00000481335 ZRANB1Q9UGI0 708 aa17.31■□□□□ 0.36
SQSTM1-207ENST00000481335 CAMTA1Q9Y6Y1 1673 aa17.3■□□□□ 0.36
SQSTM1-207ENST00000481335 ZC3H6P61129 1189 aaKnown RBP17.3■□□□□ 0.36
SQSTM1-207ENST00000481335 NUTM2GQ5VZR2 741 aa17.3■□□□□ 0.36
SQSTM1-207ENST00000481335 MON2Q7Z3U7 1717 aa17.3■□□□□ 0.36
SQSTM1-207ENST00000481335 GCP02774 474 aa17.29■□□□□ 0.36
SQSTM1-207ENST00000481335 SRCAPQ6ZRS2 3230 aa17.28■□□□□ 0.36
SQSTM1-207ENST00000481335 CHRNA2Q15822 529 aa17.28■□□□□ 0.36
SQSTM1-207ENST00000481335 BARGINQ6ZT62 677 aa17.28■□□□□ 0.36
SQSTM1-207ENST00000481335 USP54Q70EL1 1684 aa17.28■□□□□ 0.36
SQSTM1-207ENST00000481335 CPSF1Q10570 1443 aaKnown RBP17.28■□□□□ 0.36
SQSTM1-207ENST00000481335 TTC21AQ8NDW8 1320 aa17.27■□□□□ 0.36
SQSTM1-207ENST00000481335 COL5A2P05997 1499 aaPredicted RBP17.27■□□□□ 0.36
SQSTM1-207ENST00000481335 TRIM26Q12899 539 aaPredicted RBP17.27■□□□□ 0.36
SQSTM1-207ENST00000481335 THRAP3Q9Y2W1 955 aaKnown RBP17.27■□□□□ 0.36
SQSTM1-207ENST00000481335 DISP2A7MBM2 1401 aa17.27■□□□□ 0.35
SQSTM1-207ENST00000481335 TNS1Q9HBL0 1735 aaKnown RBP17.27■□□□□ 0.35
SQSTM1-207ENST00000481335 PARP4Q9UKK3 1724 aaKnown RBP17.27■□□□□ 0.35
SQSTM1-207ENST00000481335 ABCC6O95255 1503 aa17.26■□□□□ 0.35
SQSTM1-207ENST00000481335 EVA1CP58658 441 aa17.26■□□□□ 0.35
SQSTM1-207ENST00000481335 CARD11Q9BXL7 1154 aa17.26■□□□□ 0.35
SQSTM1-207ENST00000481335 STRN4Q9NRL3 753 aa17.26■□□□□ 0.35
SQSTM1-207ENST00000481335 AATKQ6ZMQ8 1374 aa17.26■□□□□ 0.35
SQSTM1-207ENST00000481335 BAG6P46379 1132 aa17.25■□□□□ 0.35
SQSTM1-207ENST00000481335 NLRP6P59044 892 aa17.25■□□□□ 0.35
SQSTM1-207ENST00000481335 COL18A1P39060 1754 aa17.25■□□□□ 0.35
SQSTM1-207ENST00000481335 CRB1P82279 1406 aa17.23■□□□□ 0.35
SQSTM1-207ENST00000481335 SLC24A1O60721 1099 aa17.23■□□□□ 0.35
SQSTM1-207ENST00000481335 TCP11L2Q8N4U5 519 aa17.23■□□□□ 0.35
SQSTM1-207ENST00000481335 KCNH5Q8NCM2 988 aa17.23■□□□□ 0.35
SQSTM1-207ENST00000481335 PUS7Q96PZ0 661 aaKnown RBP17.23■□□□□ 0.35
SQSTM1-207ENST00000481335 WNK3Q9BYP7 1800 aa17.23■□□□□ 0.35
SQSTM1-207ENST00000481335 TTC21BQ7Z4L5 1316 aa17.22■□□□□ 0.35
SQSTM1-207ENST00000481335 C11orf95C9JLR9 678 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-207ENST00000481335 DEFB132Q7Z7B7 95 aa17.22■□□□□ 0.35
SQSTM1-207ENST00000481335 KTN1Q86UP2 1357 aaKnown RBP17.22■□□□□ 0.35
SQSTM1-207ENST00000481335 LARP1Q6PKG0 1096 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-207ENST00000481335 FAM196AQ6ZSG2 479 aa17.21■□□□□ 0.35
SQSTM1-207ENST00000481335 NINLQ9Y2I6 1382 aa17.2■□□□□ 0.34
SQSTM1-207ENST00000481335 NFAT5O94916 1531 aa17.2■□□□□ 0.34
SQSTM1-207ENST00000481335 PARD3Q8TEW0 1356 aa17.19■□□□□ 0.34
SQSTM1-207ENST00000481335 CD163L1Q9NR16 1453 aa17.18■□□□□ 0.34
SQSTM1-207ENST00000481335 USP31Q70CQ4 1352 aa17.18■□□□□ 0.34
SQSTM1-207ENST00000481335 USP35Q9P2H5 1018 aa17.18■□□□□ 0.34
SQSTM1-207ENST00000481335 LRRC37A3O60309 1634 aa17.18■□□□□ 0.34
SQSTM1-207ENST00000481335 LRP5O75197 1615 aa17.18■□□□□ 0.34
SQSTM1-207ENST00000481335 RGPD5Q99666 1765 aa17.17■□□□□ 0.34
SQSTM1-207ENST00000481335 PDE3BQ13370 1112 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms