RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 SH3BP2P78314 561 aa10.54□□□□□ -0.72
PTCD3-211ENST00000476215 PROCA1Q8NCQ7 364 aaPredicted RBP10.54□□□□□ -0.72
PTCD3-211ENST00000476215 HELBQ8NG08 1087 aaPredicted RBP10.54□□□□□ -0.72
PTCD3-211ENST00000476215 SNIP1Q8TAD8 396 aaKnown RBP10.54□□□□□ -0.72
PTCD3-211ENST00000476215 MYT1Q01538 1121 aa10.53□□□□□ -0.72
PTCD3-211ENST00000476215 PKDCCQ504Y2 493 aa10.53□□□□□ -0.72
PTCD3-211ENST00000476215 CYP4X1Q8N118 509 aa10.53□□□□□ -0.72
PTCD3-211ENST00000476215 CRIPAKQ8N1N5 446 aa10.53□□□□□ -0.72
PTCD3-211ENST00000476215 FAM187AA6NFU0 413 aa10.52□□□□□ -0.73
PTCD3-211ENST00000476215 SIAH2O43255 324 aa10.52□□□□□ -0.73
PTCD3-211ENST00000476215 ZNF511Q8NB15 262 aa10.52□□□□□ -0.73
PTCD3-211ENST00000476215 MAP10Q9P2G4 905 aa10.52□□□□□ -0.73
PTCD3-211ENST00000476215 SMPD1P17405 629 aa10.5□□□□□ -0.73
PTCD3-211ENST00000476215 SMCPP49901 116 aaPredicted RBP10.5□□□□□ -0.73
PTCD3-211ENST00000476215 MPNDQ8N594 471 aa10.5□□□□□ -0.73
PTCD3-211ENST00000476215 BAP1Q92560 729 aa10.5□□□□□ -0.73
PTCD3-211ENST00000476215 CTHP32929 405 aa10.48□□□□□ -0.73
PTCD3-211ENST00000476215 TTC24A2A3L6 582 aaPredicted RBP10.47□□□□□ -0.73
PTCD3-211ENST00000476215 CTDSPL2Q05D32 466 aa10.47□□□□□ -0.73
PTCD3-211ENST00000476215 VARSP26640 1264 aaKnown RBP10.46□□□□□ -0.73
PTCD3-211ENST00000476215 CTC1Q2NKJ3 1217 aa10.46□□□□□ -0.73
PTCD3-211ENST00000476215 LINC01559Q495D7 138 aa10.46□□□□□ -0.73
PTCD3-211ENST00000476215 EHBP1Q8NDI1 1231 aa10.46□□□□□ -0.73
PTCD3-211ENST00000476215 ARMC2Q8NEN0 867 aa10.46□□□□□ -0.73
PTCD3-211ENST00000476215 J3QL48 77 aa10.45□□□□□ -0.74
PTCD3-211ENST00000476215 TSC1Q92574 1164 aa10.45□□□□□ -0.74
PTCD3-211ENST00000476215 GPKOWQ92917 476 aaPredicted RBP eCLIP10.45□□□□□ -0.743e-11■■■■□ 24.5
PTCD3-211ENST00000476215 PCMTD1Q96MG8 357 aaPredicted RBP10.45□□□□□ -0.74
PTCD3-211ENST00000476215 AAASQ9NRG9 546 aa10.45□□□□□ -0.74
PTCD3-211ENST00000476215 RFC5P40937 340 aa10.44□□□□□ -0.74
PTCD3-211ENST00000476215 GTF3C3Q9Y5Q9 886 aa10.44□□□□□ -0.74
PTCD3-211ENST00000476215 SH3RF1Q7Z6J0 888 aa10.43□□□□□ -0.74
PTCD3-211ENST00000476215 SH3BP5LQ7L8J4 393 aa10.42□□□□□ -0.74
PTCD3-211ENST00000476215 C1QTNF2Q9BXJ5 285 aa10.42□□□□□ -0.74
PTCD3-211ENST00000476215 ATP1B4Q9UN42 357 aaPredicted RBP10.42□□□□□ -0.74
PTCD3-211ENST00000476215 C4orf48Q5BLP8 95 aa10.41□□□□□ -0.74
PTCD3-211ENST00000476215 NBPF14Q5TI25 921 aa10.41□□□□□ -0.74
PTCD3-211ENST00000476215 LRRN4Q8WUT4 740 aa10.41□□□□□ -0.74
PTCD3-211ENST00000476215 FOXJ1Q92949 421 aa10.41□□□□□ -0.74
PTCD3-211ENST00000476215 CDK15Q96Q40 435 aa10.41□□□□□ -0.74
PTCD3-211ENST00000476215 ZC3H4Q9UPT8 1303 aaKnown RBP10.4□□□□□ -0.74
PTCD3-211ENST00000476215 ST8SIA5O15466 376 aa10.39□□□□□ -0.75
PTCD3-211ENST00000476215 USP17L8P0C7I0 530 aa10.39□□□□□ -0.75
PTCD3-211ENST00000476215 TMEM259Q4ZIN3 620 aa10.39□□□□□ -0.75
PTCD3-211ENST00000476215 BPHLQ86WA6 291 aaPredicted RBP10.39□□□□□ -0.75
PTCD3-211ENST00000476215 FAM174AQ8TBP5 190 aa10.39□□□□□ -0.75
PTCD3-211ENST00000476215 SOCS7O14512 581 aa10.38□□□□□ -0.75
PTCD3-211ENST00000476215 AP1G2O75843 785 aa10.38□□□□□ -0.75
PTCD3-211ENST00000476215 ALDH1A1P00352 501 aa10.38□□□□□ -0.75
PTCD3-211ENST00000476215 TRMT44Q8IYL2 757 aaKnown RBP10.38□□□□□ -0.75
PTCD3-211ENST00000476215 HPS1Q92902 700 aa10.38□□□□□ -0.75
PTCD3-211ENST00000476215 AXIN1O15169 862 aa10.37□□□□□ -0.75
PTCD3-211ENST00000476215 PDXDC2PQ6P474 469 aa10.37□□□□□ -0.75
PTCD3-211ENST00000476215 FKBPLQ9UIM3 349 aa10.37□□□□□ -0.75
PTCD3-211ENST00000476215 TLL2Q9Y6L7 1015 aa10.37□□□□□ -0.75
PTCD3-211ENST00000476215 NR6A1Q15406 480 aa10.35□□□□□ -0.75
PTCD3-211ENST00000476215 HMX1Q9NP08 348 aaPredicted RBP10.35□□□□□ -0.75
PTCD3-211ENST00000476215 MAP4K5Q9Y4K4 846 aa10.35□□□□□ -0.75
PTCD3-211ENST00000476215 ADH1CP00326 375 aa10.33□□□□□ -0.76
PTCD3-211ENST00000476215 TRIM34Q9BYJ4 488 aa10.33□□□□□ -0.76
PTCD3-211ENST00000476215 GPSM3Q9Y4H4 160 aa10.33□□□□□ -0.76
PTCD3-211ENST00000476215 WASF2Q9Y6W5 498 aa10.33□□□□□ -0.76
PTCD3-211ENST00000476215 ZNF787Q6DD87 383 aa10.32□□□□□ -0.76
PTCD3-211ENST00000476215 BANK1Q8NDB2 785 aa10.32□□□□□ -0.76
PTCD3-211ENST00000476215 DACH1Q9UI36 760 aa10.32□□□□□ -0.76
PTCD3-211ENST00000476215 EPS8L1Q8TE68 723 aa10.31□□□□□ -0.76
PTCD3-211ENST00000476215 OCSTAMPQ9BR26 566 aa10.31□□□□□ -0.76
PTCD3-211ENST00000476215 KLF16Q9BXK1 252 aaPredicted RBP10.31□□□□□ -0.76
PTCD3-211ENST00000476215 GRM5P41594 1212 aa10.3□□□□□ -0.76
PTCD3-211ENST00000476215 GJD4Q96KN9 370 aaPredicted RBP10.3□□□□□ -0.76
PTCD3-211ENST00000476215 POTECB2RU33 542 aa10.29□□□□□ -0.76
PTCD3-211ENST00000476215 NR5A1Q13285 461 aa10.29□□□□□ -0.76
PTCD3-211ENST00000476215 NNTQ13423 1086 aa10.29□□□□□ -0.76
PTCD3-211ENST00000476215 AGERQ15109 404 aa10.29□□□□□ -0.76
PTCD3-211ENST00000476215 ERFEQ4G0M1 354 aa10.29□□□□□ -0.76
PTCD3-211ENST00000476215 ATP13A2Q9NQ11 1180 aa10.29□□□□□ -0.76
PTCD3-211ENST00000476215 PNMA1Q8ND90 353 aa10.28□□□□□ -0.76
PTCD3-211ENST00000476215 ARHGAP9Q9BRR9 750 aa10.27□□□□□ -0.77
PTCD3-211ENST00000476215 PTK2Q05397 1052 aa10.26□□□□□ -0.77
PTCD3-211ENST00000476215 NR3C2P08235 984 aa10.25□□□□□ -0.77
PTCD3-211ENST00000476215 TIMP2P16035 220 aa10.25□□□□□ -0.77
PTCD3-211ENST00000476215 GMPR2Q9P2T1 348 aaKnown RBP10.25□□□□□ -0.77
PTCD3-211ENST00000476215 CDV3Q9UKY7 258 aaKnown RBP10.25□□□□□ -0.77
PTCD3-211ENST00000476215 CAPN5O15484 640 aaPredicted RBP10.24□□□□□ -0.77
PTCD3-211ENST00000476215 GPR37L1O60883 481 aa10.24□□□□□ -0.77
PTCD3-211ENST00000476215 MAGEB6P1A0A0J9YX57 407 aa10.23□□□□□ -0.77
PTCD3-211ENST00000476215 MTMR14Q8NCE2 650 aa10.23□□□□□ -0.77
PTCD3-211ENST00000476215 TRIM47Q96LD4 638 aa10.23□□□□□ -0.77
PTCD3-211ENST00000476215 TRIM46Q7Z4K8 759 aa10.22□□□□□ -0.77
PTCD3-211ENST00000476215 CARD14Q9BXL6 1004 aa10.22□□□□□ -0.77
PTCD3-211ENST00000476215 SENP2Q9HC62 589 aa10.22□□□□□ -0.77
PTCD3-211ENST00000476215 ARID5BQ14865 1188 aa10.21□□□□□ -0.77
PTCD3-211ENST00000476215 VASH1Q7L8A9 365 aaPredicted RBP10.21□□□□□ -0.77
PTCD3-211ENST00000476215 ADAM32Q8TC27 787 aa10.21□□□□□ -0.77
PTCD3-211ENST00000476215 FSHRP23945 695 aa10.2□□□□□ -0.78
PTCD3-211ENST00000476215 WDR4P57081 412 aaKnown RBP10.2□□□□□ -0.78
PTCD3-211ENST00000476215 ZBTB33Q86T24 672 aa10.2□□□□□ -0.78
PTCD3-211ENST00000476215 KIFC2Q96AC6 838 aa10.2□□□□□ -0.78
PTCD3-211ENST00000476215 SLC10A4Q96EP9 437 aa10.2□□□□□ -0.78
PTCD3-211ENST00000476215 C14orf37Q86TY3 774 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms