RNA–Protein interactions for RNA: ENST00000475329.5

TRAF4-210, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-210ENST00000475329 BLMP54132 1417 aaPredicted RBP18.41■□□□□ 0.54
TRAF4-210ENST00000475329 USP54Q70EL1 1684 aa18.41■□□□□ 0.54
TRAF4-210ENST00000475329 RBM33Q96EV2 1170 aaKnown RBP18.41■□□□□ 0.54
TRAF4-210ENST00000475329 DCCP43146 1447 aa18.4■□□□□ 0.54
TRAF4-210ENST00000475329 PIK3C2AO00443 1686 aa18.4■□□□□ 0.54
TRAF4-210ENST00000475329 SSH2Q76I76 1423 aa18.4■□□□□ 0.54
TRAF4-210ENST00000475329 WDR43Q15061 677 aaKnown RBP eCLIP18.39■□□□□ 0.53
TRAF4-210ENST00000475329 NGDNQ8NEJ9 315 aaKnown RBP18.39■□□□□ 0.53
TRAF4-210ENST00000475329 ZBED9Q6R2W3 1325 aa18.39■□□□□ 0.53
TRAF4-210ENST00000475329 TTC21BQ7Z4L5 1316 aa18.39■□□□□ 0.53
TRAF4-210ENST00000475329 NME9Q86XW9 330 aa18.38■□□□□ 0.53
TRAF4-210ENST00000475329 PMFBP1Q8TBY8 1022 aa18.38■□□□□ 0.53
TRAF4-210ENST00000475329 CFAP53Q96M91 514 aa18.38■□□□□ 0.53
TRAF4-210ENST00000475329 TTC21AQ8NDW8 1320 aa18.38■□□□□ 0.53
TRAF4-210ENST00000475329 SCAF1Q9H7N4 1312 aaKnown RBP18.38■□□□□ 0.53
TRAF4-210ENST00000475329 TMEM94Q12767 1356 aa18.38■□□□□ 0.53
TRAF4-210ENST00000475329 MARF1Q9Y4F3 1742 aaKnown RBP18.37■□□□□ 0.53
TRAF4-210ENST00000475329 OVOS2A0A0J9YW53 1432 aa18.36■□□□□ 0.53
TRAF4-210ENST00000475329 MTHFSP49914 203 aa18.36■□□□□ 0.53
TRAF4-210ENST00000475329 OVOS2Q6IE36 1432 aa18.36■□□□□ 0.53
TRAF4-210ENST00000475329 COG3Q96JB2 828 aa18.36■□□□□ 0.53
TRAF4-210ENST00000475329 PHF8Q9UPP1 1060 aa18.36■□□□□ 0.53
TRAF4-210ENST00000475329 C19orf44Q9H6X5 657 aa18.35■□□□□ 0.53
TRAF4-210ENST00000475329 LRRC7Q96NW7 1537 aa18.34■□□□□ 0.53
TRAF4-210ENST00000475329 COL3A1P02461 1466 aaPredicted RBP18.34■□□□□ 0.53
TRAF4-210ENST00000475329 SMG6Q86US8 1419 aaKnown RBP18.34■□□□□ 0.53
TRAF4-210ENST00000475329 AATKQ6ZMQ8 1374 aa18.33■□□□□ 0.53
TRAF4-210ENST00000475329 C1orf167Q5SNV9 1468 aa18.33■□□□□ 0.52
TRAF4-210ENST00000475329 ADAMTS8Q9UP79 889 aa18.32■□□□□ 0.52
TRAF4-210ENST00000475329 CDK12Q9NYV4 1490 aaPredicted RBP18.32■□□□□ 0.52
TRAF4-210ENST00000475329 TRPM3Q9HCF6 1732 aaPredicted RBP18.32■□□□□ 0.52
TRAF4-210ENST00000475329 MST1RQ04912 1400 aa18.32■□□□□ 0.52
TRAF4-210ENST00000475329 MSH6P52701 1360 aa18.31■□□□□ 0.52
TRAF4-210ENST00000475329 ZRANB1Q9UGI0 708 aa18.31■□□□□ 0.52
TRAF4-210ENST00000475329 USP31Q70CQ4 1352 aa18.3■□□□□ 0.52
TRAF4-210ENST00000475329 ATF3P18847 181 aa18.3■□□□□ 0.52
TRAF4-210ENST00000475329 ESCO1Q5FWF5 840 aa18.3■□□□□ 0.52
TRAF4-210ENST00000475329 ZNF335Q9H4Z2 1342 aaPredicted RBP18.29■□□□□ 0.52
TRAF4-210ENST00000475329 CERKQ8TCT0 537 aa18.28■□□□□ 0.52
TRAF4-210ENST00000475329 PNPLA6Q8IY17 1366 aa18.28■□□□□ 0.52
TRAF4-210ENST00000475329 CADPS2Q86UW7 1296 aa18.27■□□□□ 0.52
TRAF4-210ENST00000475329 PEAK1Q9H792 1746 aa18.26■□□□□ 0.51
TRAF4-210ENST00000475329 POLKQ9UBT6 870 aa18.26■□□□□ 0.51
TRAF4-210ENST00000475329 LTN1O94822 1766 aa18.25■□□□□ 0.51
TRAF4-210ENST00000475329 ORAI2Q96SN7 254 aa18.25■□□□□ 0.51
TRAF4-210ENST00000475329 NUDCQ9Y266 331 aa18.25■□□□□ 0.51
TRAF4-210ENST00000475329 ALS2Q96Q42 1657 aa18.25■□□□□ 0.51
TRAF4-210ENST00000475329 PSME1Q06323 249 aa18.24■□□□□ 0.51
TRAF4-210ENST00000475329 DIAPH1O60610 1272 aaKnown RBP18.23■□□□□ 0.51
TRAF4-210ENST00000475329 IQSEC2Q5JU85 1478 aa18.22■□□□□ 0.51
TRAF4-210ENST00000475329 PAK3O75914 559 aaPredicted RBP18.22■□□□□ 0.51
TRAF4-210ENST00000475329 EMILIN1Q9Y6C2 1016 aa18.22■□□□□ 0.51
TRAF4-210ENST00000475329 PPM1GO15355 546 aaPredicted RBP18.21■□□□□ 0.51
TRAF4-210ENST00000475329 FBLN1P23142 703 aa18.21■□□□□ 0.51
TRAF4-210ENST00000475329 NLRP6P59044 892 aa18.21■□□□□ 0.51
TRAF4-210ENST00000475329 CCDC146Q8IYE0 955 aa18.21■□□□□ 0.51
TRAF4-210ENST00000475329 ABTB2Q8N961 1025 aa18.21■□□□□ 0.51
TRAF4-210ENST00000475329 SENP3-EIF4A1A0A087X0R7 540 aa18.2■□□□□ 0.5
TRAF4-210ENST00000475329 RRS1Q15050 365 aaKnown RBP18.2■□□□□ 0.5
TRAF4-210ENST00000475329 FOXO3O43524 673 aa18.19■□□□□ 0.5
TRAF4-210ENST00000475329 U2AF1L5P0DN76 240 aaPredicted RBP18.19■□□□□ 0.5
TRAF4-210ENST00000475329 U2AF1Q01081 240 aaKnown RBP eCLIP18.19■□□□□ 0.53e-7■■□□□ 12.8
TRAF4-210ENST00000475329 PHRF1Q9P1Y6 1649 aaKnown RBP18.19■□□□□ 0.5
TRAF4-210ENST00000475329 SLIT3O75094 1523 aa18.18■□□□□ 0.5
TRAF4-210ENST00000475329 NFAT5O94916 1531 aa18.18■□□□□ 0.5
TRAF4-210ENST00000475329 RGPD1P0DJD0 1748 aa18.18■□□□□ 0.5
TRAF4-210ENST00000475329 U2SURPO15042 1029 aaKnown RBP18.18■□□□□ 0.5
TRAF4-210ENST00000475329 PDE3BQ13370 1112 aa18.18■□□□□ 0.5
TRAF4-210ENST00000475329 NGEFQ8N5V2 710 aa18.18■□□□□ 0.5
TRAF4-210ENST00000475329 RUNDC1Q96C34 613 aa18.18■□□□□ 0.5
TRAF4-210ENST00000475329 SALL2Q9Y467 1007 aaPredicted RBP18.17■□□□□ 0.5
TRAF4-210ENST00000475329 SBNO1A3KN83 1393 aa18.17■□□□□ 0.5
TRAF4-210ENST00000475329 APAF1O14727 1248 aa18.16■□□□□ 0.5
TRAF4-210ENST00000475329 KRT28Q7Z3Y7 464 aa18.16■□□□□ 0.5
TRAF4-210ENST00000475329 NPHP3Q7Z494 1330 aa18.16■□□□□ 0.5
TRAF4-210ENST00000475329 FLT4P35916 1363 aa18.16■□□□□ 0.5
TRAF4-210ENST00000475329 KIF24Q5T7B8 1368 aa18.16■□□□□ 0.5
TRAF4-210ENST00000475329 PXDNQ92626 1479 aa18.15■□□□□ 0.5
TRAF4-210ENST00000475329 SOX12O15370 315 aa18.15■□□□□ 0.5
TRAF4-210ENST00000475329 NUTM2GQ5VZR2 741 aa18.15■□□□□ 0.5
TRAF4-210ENST00000475329 NHSL1Q5SYE7 1610 aa18.15■□□□□ 0.5
TRAF4-210ENST00000475329 LTBP4Q8N2S1 1624 aa18.15■□□□□ 0.5
TRAF4-210ENST00000475329 XPCQ01831 940 aaPredicted RBP18.14■□□□□ 0.49
TRAF4-210ENST00000475329 PNNQ9H307 717 aaKnown RBP18.14■□□□□ 0.49
TRAF4-210ENST00000475329 MAP3K19Q56UN5 1328 aa18.14■□□□□ 0.49
TRAF4-210ENST00000475329 CRYBG1Q9Y4K1 1723 aa18.14■□□□□ 0.49
TRAF4-210ENST00000475329 IL13P35225 146 aa18.13■□□□□ 0.49
TRAF4-210ENST00000475329 GTF3C3Q9Y5Q9 886 aa18.13■□□□□ 0.49
TRAF4-210ENST00000475329 RTL1A6NKG5 1358 aa18.13■□□□□ 0.49
TRAF4-210ENST00000475329 TNS3Q68CZ2 1445 aa18.12■□□□□ 0.49
TRAF4-210ENST00000475329 KCNH5Q8NCM2 988 aa18.11■□□□□ 0.49
TRAF4-210ENST00000475329 USP19O94966 1318 aa18.11■□□□□ 0.49
TRAF4-210ENST00000475329 ZNF521Q96K83 1311 aa18.11■□□□□ 0.49
TRAF4-210ENST00000475329 MAPK8IP3Q9UPT6 1336 aa18.11■□□□□ 0.49
TRAF4-210ENST00000475329 MED1Q15648 1581 aaPredicted RBP18.11■□□□□ 0.49
TRAF4-210ENST00000475329 DLG5Q8TDM6 1919 aa18.1■□□□□ 0.49
TRAF4-210ENST00000475329 FCHSD2O94868 740 aa18.1■□□□□ 0.49
TRAF4-210ENST00000475329 AMPHP49418 695 aa18.1■□□□□ 0.49
TRAF4-210ENST00000475329 BRINP3Q76B58 766 aa18.1■□□□□ 0.49
TRAF4-210ENST00000475329 TCP11L2Q8N4U5 519 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 136.6 ms