RNA–Protein interactions for RNA: ENST00000474319.1

LSS-208, Transcript of lanosterol synthase, human

TSL 2

Gene LSS, Length 3,601 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSS-208	ENST00000474319	ABCC3	O15438	1527 aa		13.52	□□□□□ -0.24
LSS-208	ENST00000474319	TMPO	P42166	694 aa	Known RBP	13.52	□□□□□ -0.25
LSS-208	ENST00000474319	DIP2C	Q9Y2E4	1556 aa		13.51	□□□□□ -0.25
LSS-208	ENST00000474319	XRCC6	P12956	609 aa	Known RBP eCLIP	13.51	□□□□□ -0.25	9e-10	■■■■□ 23.4
LSS-208	ENST00000474319	PPRC1	Q5VV67	1664 aa	Known RBP	13.51	□□□□□ -0.25
LSS-208	ENST00000474319	TRAK2	O60296	914 aa		13.51	□□□□□ -0.25
LSS-208	ENST00000474319	LTK	P29376	864 aa		13.51	□□□□□ -0.25
LSS-208	ENST00000474319	MCM4	P33991	863 aa		13.51	□□□□□ -0.25
LSS-208	ENST00000474319	NCL	P19338	710 aa	Known RBP	13.5	□□□□□ -0.25
LSS-208	ENST00000474319	TRPM2	O94759	1503 aa		13.5	□□□□□ -0.25
LSS-208	ENST00000474319	MADD	Q8WXG6	1647 aa		13.5	□□□□□ -0.25
LSS-208	ENST00000474319	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.5	□□□□□ -0.25
LSS-208	ENST00000474319	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.5	□□□□□ -0.25
LSS-208	ENST00000474319	DNAJC5	Q9H3Z4	198 aa		13.5	□□□□□ -0.25
LSS-208	ENST00000474319	EFCAB6	Q5THR3	1501 aa		13.5	□□□□□ -0.25
LSS-208	ENST00000474319	ATF7IP	Q6VMQ6	1270 aa		13.5	□□□□□ -0.25
LSS-208	ENST00000474319	WDR63	Q8IWG1	891 aa		13.5	□□□□□ -0.25
LSS-208	ENST00000474319	ANTXR1	Q9H6X2	564 aa		13.5	□□□□□ -0.25
LSS-208	ENST00000474319	HDGF	P51858	240 aa	Known RBP	13.49	□□□□□ -0.25
LSS-208	ENST00000474319	DCTN1	Q14203	1278 aa		13.49	□□□□□ -0.25
LSS-208	ENST00000474319	ATAD2	Q6PL18	1390 aa		13.49	□□□□□ -0.25
LSS-208	ENST00000474319	PRKAR2B	P31323	418 aa		13.49	□□□□□ -0.25
LSS-208	ENST00000474319	POLR3A	O14802	1390 aa	Predicted RBP	13.48	□□□□□ -0.25
LSS-208	ENST00000474319	RPGRIP1L	Q68CZ1	1315 aa		13.48	□□□□□ -0.25
LSS-208	ENST00000474319	TNR	Q92752	1358 aa		13.48	□□□□□ -0.25
LSS-208	ENST00000474319	TSPYL6	Q8N831	410 aa		13.47	□□□□□ -0.25
LSS-208	ENST00000474319	TRIM35	Q9UPQ4	493 aa		13.47	□□□□□ -0.25
LSS-208	ENST00000474319	ZRANB1	Q9UGI0	708 aa		13.47	□□□□□ -0.25
LSS-208	ENST00000474319	CFAP74	Q9C0B2	1584 aa		13.47	□□□□□ -0.25
LSS-208	ENST00000474319	STAC3	Q96MF2	364 aa		13.47	□□□□□ -0.25
LSS-208	ENST00000474319	SYNM	O15061	1565 aa		13.46	□□□□□ -0.25
LSS-208	ENST00000474319	TET3	O43151	1660 aa		13.46	□□□□□ -0.25
LSS-208	ENST00000474319	FAM83G	A6ND36	823 aa		13.46	□□□□□ -0.25
LSS-208	ENST00000474319	DDX19B	Q9UMR2	479 aa		13.46	□□□□□ -0.25
LSS-208	ENST00000474319	DIAPH1	O60610	1272 aa	Known RBP	13.46	□□□□□ -0.26
LSS-208	ENST00000474319	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.46	□□□□□ -0.26
LSS-208	ENST00000474319	CD2BP2	O95400	341 aa	Known RBP	13.45	□□□□□ -0.26
LSS-208	ENST00000474319	HSPA2	P54652	639 aa		13.45	□□□□□ -0.26
LSS-208	ENST00000474319	L1TD1	Q5T7N2	865 aa	Known RBP	13.45	□□□□□ -0.26
LSS-208	ENST00000474319	MROH1	Q8NDA8	1641 aa		13.45	□□□□□ -0.26
LSS-208	ENST00000474319	RNF17	Q9BXT8	1623 aa	Known RBP	13.45	□□□□□ -0.26
LSS-208	ENST00000474319	CHMP5	Q9NZZ3	219 aa		13.45	□□□□□ -0.26
LSS-208	ENST00000474319	RIMS2	Q9UQ26	1411 aa		13.45	□□□□□ -0.26
LSS-208	ENST00000474319	PHACTR3	Q96KR7	559 aa		13.45	□□□□□ -0.26
LSS-208	ENST00000474319	XPC	Q01831	940 aa	Predicted RBP	13.45	□□□□□ -0.26
LSS-208	ENST00000474319	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.45	□□□□□ -0.26
LSS-208	ENST00000474319	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.45	□□□□□ -0.26
LSS-208	ENST00000474319	FAM43A	Q8N2R8	423 aa		13.45	□□□□□ -0.26
LSS-208	ENST00000474319	SPHKAP	Q2M3C7	1700 aa		13.44	□□□□□ -0.26
LSS-208	ENST00000474319	NOL8	Q76FK4	1167 aa	Known RBP	13.44	□□□□□ -0.26
LSS-208	ENST00000474319	FYB1	O15117	783 aa		13.44	□□□□□ -0.26
LSS-208	ENST00000474319	KRT24	Q2M2I5	525 aa		13.43	□□□□□ -0.26
LSS-208	ENST00000474319	NGDN	Q8NEJ9	315 aa	Known RBP	13.43	□□□□□ -0.26
LSS-208	ENST00000474319	CHAMP1	Q96JM3	812 aa		13.43	□□□□□ -0.26
LSS-208	ENST00000474319	ARID3A	Q99856	593 aa		13.43	□□□□□ -0.26
LSS-208	ENST00000474319	TERF2IP	Q9NYB0	399 aa		13.43	□□□□□ -0.26
LSS-208	ENST00000474319	AMOTL2	Q9Y2J4	779 aa		13.43	□□□□□ -0.26
LSS-208	ENST00000474319	RRS1	Q15050	365 aa	Known RBP	13.43	□□□□□ -0.26
LSS-208	ENST00000474319	PNN	Q9H307	717 aa	Known RBP	13.43	□□□□□ -0.26
LSS-208	ENST00000474319	EMILIN1	Q9Y6C2	1016 aa		13.43	□□□□□ -0.26
LSS-208	ENST00000474319	MAP3K4	Q9Y6R4	1608 aa		13.43	□□□□□ -0.26
LSS-208	ENST00000474319	NPC1L1	Q9UHC9	1359 aa		13.43	□□□□□ -0.26
LSS-208	ENST00000474319	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.43	□□□□□ -0.26
LSS-208	ENST00000474319	KDM5A	P29375	1690 aa	Known RBP	13.42	□□□□□ -0.26
LSS-208	ENST00000474319	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.42	□□□□□ -0.26
LSS-208	ENST00000474319	CHD1L	Q86WJ1	897 aa		13.42	□□□□□ -0.26
LSS-208	ENST00000474319	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.42	□□□□□ -0.26
LSS-208	ENST00000474319	MET	P08581	1390 aa		13.42	□□□□□ -0.26
LSS-208	ENST00000474319	TNPO1	Q92973	898 aa	Known RBP	13.41	□□□□□ -0.26
LSS-208	ENST00000474319		A0A1W2PP64	1363 aa		13.41	□□□□□ -0.26
LSS-208	ENST00000474319	LTV1	Q96GA3	475 aa	Predicted RBP	13.41	□□□□□ -0.26
LSS-208	ENST00000474319	NME9	Q86XW9	330 aa		13.4	□□□□□ -0.26
LSS-208	ENST00000474319	IPO8	O15397	1037 aa	Known RBP	13.4	□□□□□ -0.26
LSS-208	ENST00000474319	SMARCA5	O60264	1052 aa	Predicted RBP	13.4	□□□□□ -0.26
LSS-208	ENST00000474319	SSFA2	P28290	1259 aa		13.4	□□□□□ -0.26
LSS-208	ENST00000474319	IQGAP1	P46940	1657 aa		13.4	□□□□□ -0.26
LSS-208	ENST00000474319	NGEF	Q8N5V2	710 aa		13.4	□□□□□ -0.26
LSS-208	ENST00000474319	TRIM44	Q96DX7	344 aa	Predicted RBP	13.4	□□□□□ -0.26
LSS-208	ENST00000474319	ZBTB40	Q9NUA8	1239 aa		13.4	□□□□□ -0.26
LSS-208	ENST00000474319	NUDT16	Q96DE0	195 aa	Known RBP	13.39	□□□□□ -0.27
LSS-208	ENST00000474319	MIS18A	Q9NYP9	233 aa		13.39	□□□□□ -0.27
LSS-208	ENST00000474319	NLRP1	Q9C000	1473 aa		13.39	□□□□□ -0.27
LSS-208	ENST00000474319	MYOM1	P52179	1685 aa		13.39	□□□□□ -0.27
LSS-208	ENST00000474319	NECTIN2	Q92692	538 aa		13.39	□□□□□ -0.27
LSS-208	ENST00000474319	RICTOR	Q6R327	1708 aa		13.39	□□□□□ -0.27
LSS-208	ENST00000474319	GAS2L3	Q86XJ1	694 aa		13.38	□□□□□ -0.27
LSS-208	ENST00000474319	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.38	□□□□□ -0.27
LSS-208	ENST00000474319	TSHZ3	Q63HK5	1081 aa		13.38	□□□□□ -0.27
LSS-208	ENST00000474319	PLEKHF1	Q96S99	279 aa		13.38	□□□□□ -0.27
LSS-208	ENST00000474319	PHF23	Q9BUL5	403 aa	Predicted RBP	13.38	□□□□□ -0.27
LSS-208	ENST00000474319	GRPEL1	Q9HAV7	217 aa		13.38	□□□□□ -0.27
LSS-208	ENST00000474319	LAMC1	P11047	1609 aa		13.37	□□□□□ -0.27
LSS-208	ENST00000474319	SLC4A10	Q6U841	1118 aa		13.37	□□□□□ -0.27
LSS-208	ENST00000474319	TBC1D9	Q6ZT07	1266 aa		13.37	□□□□□ -0.27
LSS-208	ENST00000474319	NINL	Q9Y2I6	1382 aa		13.37	□□□□□ -0.27
LSS-208	ENST00000474319	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.37	□□□□□ -0.27
LSS-208	ENST00000474319	DTNB	O60941	627 aa		13.37	□□□□□ -0.27
LSS-208	ENST00000474319	KCNA6	P17658	529 aa		13.37	□□□□□ -0.27
LSS-208	ENST00000474319	KIF1B	O60333	1816 aa		13.37	□□□□□ -0.27
LSS-208	ENST00000474319	MPND	Q8N594	471 aa		13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms