RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 FHDC1Q9C0D6 1143 aaPredicted RBP9.13□□□□□ -0.95
HMGB1-207ENST00000468384 FKBP8Q14318 412 aa9.12□□□□□ -0.95
HMGB1-207ENST00000468384 CADPS2Q86UW7 1296 aa9.12□□□□□ -0.95
HMGB1-207ENST00000468384 PLCD3Q8N3E9 789 aa9.12□□□□□ -0.95
HMGB1-207ENST00000468384 PTCH1Q13635 1447 aa9.12□□□□□ -0.95
HMGB1-207ENST00000468384 ATP10DQ9P241 1426 aa9.12□□□□□ -0.95
HMGB1-207ENST00000468384 NRKQ7Z2Y5 1582 aa9.12□□□□□ -0.95
HMGB1-207ENST00000468384 NCOA2Q15596 1464 aa9.11□□□□□ -0.95
HMGB1-207ENST00000468384 LHX6Q9UPM6 363 aa9.11□□□□□ -0.95
HMGB1-207ENST00000468384 GLI3P10071 1580 aa9.11□□□□□ -0.95
HMGB1-207ENST00000468384 NUDT7P0C024 238 aa9.1□□□□□ -0.95
HMGB1-207ENST00000468384 GPR162Q16538 588 aa9.1□□□□□ -0.95
HMGB1-207ENST00000468384 NBPF8Q3BBV2 869 aa9.1□□□□□ -0.95
HMGB1-207ENST00000468384 NBPF14Q5TI25 921 aa9.1□□□□□ -0.95
HMGB1-207ENST00000468384 CUL9Q8IWT3 2517 aa9.09□□□□□ -0.95
HMGB1-207ENST00000468384 ATF3P18847 181 aa9.09□□□□□ -0.95
HMGB1-207ENST00000468384 PSEN1P49768 467 aa9.09□□□□□ -0.95
HMGB1-207ENST00000468384 MROH1Q8NDA8 1641 aa9.09□□□□□ -0.95
HMGB1-207ENST00000468384 PDE4DIPQ5VU43 2346 aa9.08□□□□□ -0.96
HMGB1-207ENST00000468384 ARHGAP5Q13017 1502 aa9.08□□□□□ -0.96
HMGB1-207ENST00000468384 GOLGB1Q14789 3259 aaKnown RBP9.08□□□□□ -0.96
HMGB1-207ENST00000468384 ARHGAP33O14559 1287 aa9.07□□□□□ -0.96
HMGB1-207ENST00000468384 HSPA1AP0DMV8 641 aaKnown RBP9.07□□□□□ -0.96
HMGB1-207ENST00000468384 HSPA1BP0DMV9 641 aaKnown RBP9.07□□□□□ -0.96
HMGB1-207ENST00000468384 HNRNPMP52272 730 aaKnown RBP eCLIP9.07□□□□□ -0.96
HMGB1-207ENST00000468384 C14orf37Q86TY3 774 aa9.07□□□□□ -0.96
HMGB1-207ENST00000468384 SLC26A8Q96RN1 970 aa9.07□□□□□ -0.96
HMGB1-207ENST00000468384 EID1Q9Y6B2 187 aa9.07□□□□□ -0.96
HMGB1-207ENST00000468384 PLXNC1O60486 1568 aa9.07□□□□□ -0.96
HMGB1-207ENST00000468384 DLC1Q96QB1 1528 aa9.06□□□□□ -0.96
HMGB1-207ENST00000468384 RGPD1P0DJD0 1748 aa9.06□□□□□ -0.96
HMGB1-207ENST00000468384 MYO5CQ9NQX4 1742 aa9.06□□□□□ -0.96
HMGB1-207ENST00000468384 RGS19P49795 217 aa9.06□□□□□ -0.96
HMGB1-207ENST00000468384 PARD3Q8TEW0 1356 aa9.06□□□□□ -0.96
HMGB1-207ENST00000468384 MYOM1P52179 1685 aa9.06□□□□□ -0.96
HMGB1-207ENST00000468384 USP19O94966 1318 aa9.05□□□□□ -0.96
HMGB1-207ENST00000468384 ASXL1Q8IXJ9 1541 aa9.05□□□□□ -0.96
HMGB1-207ENST00000468384 KIAA1210Q9ULL0 1709 aa9.05□□□□□ -0.96
HMGB1-207ENST00000468384 ARHGAP35Q9NRY4 1499 aa9.05□□□□□ -0.96
HMGB1-207ENST00000468384 TK2O00142 265 aa9.05□□□□□ -0.96
HMGB1-207ENST00000468384 ONECUT3O60422 494 aaPredicted RBP9.05□□□□□ -0.96
HMGB1-207ENST00000468384 DDX17Q92841 729 aaKnown RBP9.05□□□□□ -0.96
HMGB1-207ENST00000468384 NCOA3Q9Y6Q9 1424 aa9.05□□□□□ -0.96
HMGB1-207ENST00000468384 PSEN2P49810 448 aa9.04□□□□□ -0.96
HMGB1-207ENST00000468384 HTRA3P83110 453 aa9.04□□□□□ -0.96
HMGB1-207ENST00000468384 ZNF526Q8TF50 670 aaPredicted RBP9.04□□□□□ -0.96
HMGB1-207ENST00000468384 C19orf44Q9H6X5 657 aa9.04□□□□□ -0.96
HMGB1-207ENST00000468384 SLIT1O75093 1534 aa9.04□□□□□ -0.96
HMGB1-207ENST00000468384 UNC5CLQ8IV45 518 aa9.03□□□□□ -0.96
HMGB1-207ENST00000468384 CABP2Q9NPB3 220 aa9.03□□□□□ -0.96
HMGB1-207ENST00000468384 DLL1O00548 723 aa9.02□□□□□ -0.97
HMGB1-207ENST00000468384 CTTNBP2Q8WZ74 1663 aa9.01□□□□□ -0.97
HMGB1-207ENST00000468384 KIF3CO14782 793 aa9.01□□□□□ -0.97
HMGB1-207ENST00000468384 ZBTB7AO95365 584 aa9.01□□□□□ -0.97
HMGB1-207ENST00000468384 ZNF467Q7Z7K2 595 aaPredicted RBP9.01□□□□□ -0.97
HMGB1-207ENST00000468384 MICALL2Q8IY33 904 aa9.01□□□□□ -0.97
HMGB1-207ENST00000468384 MPNDQ8N594 471 aa9.01□□□□□ -0.97
HMGB1-207ENST00000468384 SPAG9O60271 1321 aaKnown RBP9.01□□□□□ -0.97
HMGB1-207ENST00000468384 TNRC18O15417 2968 aaPredicted RBP9□□□□□ -0.97
HMGB1-207ENST00000468384 SIPA1L2Q9P2F8 1722 aaPredicted RBP9□□□□□ -0.97
HMGB1-207ENST00000468384 SAMD9Q5K651 1589 aa9□□□□□ -0.97
HMGB1-207ENST00000468384 SAMD9LQ8IVG5 1584 aa9□□□□□ -0.97
HMGB1-207ENST00000468384 STAC3Q96MF2 364 aa9□□□□□ -0.97
HMGB1-207ENST00000468384 PITPNM2Q9BZ72 1349 aa9□□□□□ -0.97
HMGB1-207ENST00000468384 WDR90Q96KV7 1748 aa9□□□□□ -0.97
HMGB1-207ENST00000468384 TNS1Q9HBL0 1735 aaKnown RBP9□□□□□ -0.97
HMGB1-207ENST00000468384 PPP1R15AO75807 674 aaPredicted RBP8.99□□□□□ -0.97
HMGB1-207ENST00000468384 FAM182BQ5T319 152 aa8.99□□□□□ -0.97
HMGB1-207ENST00000468384 UBR1Q8IWV7 1749 aa8.98□□□□□ -0.97
HMGB1-207ENST00000468384 APBA3O96018 575 aa8.98□□□□□ -0.97
HMGB1-207ENST00000468384 LCE2AQ5TA79 106 aaPredicted RBP8.98□□□□□ -0.97
HMGB1-207ENST00000468384 ABHD8Q96I13 439 aa8.98□□□□□ -0.97
HMGB1-207ENST00000468384 WASHC2CQ9Y4E1 1318 aa8.98□□□□□ -0.97
HMGB1-207ENST00000468384 TET3O43151 1660 aa8.97□□□□□ -0.97
HMGB1-207ENST00000468384 FMN1Q68DA7 1419 aa8.97□□□□□ -0.97
HMGB1-207ENST00000468384 NUP188Q5SRE5 1749 aa8.97□□□□□ -0.97
HMGB1-207ENST00000468384 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.97□□□□□ -0.97
HMGB1-207ENST00000468384 THSD4Q6ZMP0 1018 aa8.97□□□□□ -0.97
HMGB1-207ENST00000468384 PDGFDQ9GZP0 370 aaPredicted RBP8.97□□□□□ -0.97
HMGB1-207ENST00000468384 ZBTB47Q9UFB7 747 aaPredicted RBP8.97□□□□□ -0.97
HMGB1-207ENST00000468384 ADGRB2O60241 1585 aa8.97□□□□□ -0.97
HMGB1-207ENST00000468384 MYT1Q01538 1121 aa8.96□□□□□ -0.98
HMGB1-207ENST00000468384 SUZ12Q15022 739 aaKnown RBP8.96□□□□□ -0.98
HMGB1-207ENST00000468384 RREB1Q92766 1687 aa8.96□□□□□ -0.98
HMGB1-207ENST00000468384 MAP3K5Q99683 1374 aa8.96□□□□□ -0.98
HMGB1-207ENST00000468384 GPATCH8Q9UKJ3 1502 aaKnown RBP8.95□□□□□ -0.98
HMGB1-207ENST00000468384 TRIM37O94972 964 aa8.95□□□□□ -0.98
HMGB1-207ENST00000468384 TOMM70O94826 608 aa8.94□□□□□ -0.98
HMGB1-207ENST00000468384 VPS72Q15906 364 aa8.94□□□□□ -0.98
HMGB1-207ENST00000468384 ADCY9O60503 1353 aa8.94□□□□□ -0.98
HMGB1-207ENST00000468384 TMEM2Q9UHN6 1383 aa8.94□□□□□ -0.98
HMGB1-207ENST00000468384 MYOM2P54296 1465 aa8.94□□□□□ -0.98
HMGB1-207ENST00000468384 SLIT2O94813 1529 aa8.94□□□□□ -0.98
HMGB1-207ENST00000468384 CASZ1Q86V15 1759 aa8.94□□□□□ -0.98
HMGB1-207ENST00000468384 NRG2O14511 850 aaPredicted RBP8.93□□□□□ -0.98
HMGB1-207ENST00000468384 A0A0C4DFX4 3053 aa8.93□□□□□ -0.98
HMGB1-207ENST00000468384 GRIN3BO60391 1043 aa8.92□□□□□ -0.98
HMGB1-207ENST00000468384 ARXQ96QS3 562 aa8.92□□□□□ -0.98
HMGB1-207ENST00000468384 CCDC9Q9Y3X0 531 aaKnown RBP8.92□□□□□ -0.98
HMGB1-207ENST00000468384 CACNA1AO00555 2505 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 282.9 ms