RNA–Protein interactions for RNA: ENST00000466410.5

LIMS2-212, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,592 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-212ENST00000466410 TERF2IPQ9NYB0 399 aa24.8■■□□□ 1.56
LIMS2-212ENST00000466410 YTHDC2Q9H6S0 1430 aaKnown RBP24.8■■□□□ 1.56
LIMS2-212ENST00000466410 CD163L1Q9NR16 1453 aa24.8■■□□□ 1.56
LIMS2-212ENST00000466410 TRIM35Q9UPQ4 493 aa24.79■■□□□ 1.56
LIMS2-212ENST00000466410 PDZRN3Q9UPQ7 1066 aa24.79■■□□□ 1.56
LIMS2-212ENST00000466410 MVPQ14764 893 aaKnown RBP24.78■■□□□ 1.56
LIMS2-212ENST00000466410 EXOSC9Q06265 439 aaKnown RBP24.78■■□□□ 1.56
LIMS2-212ENST00000466410 ZKSCAN2Q63HK3 967 aa24.78■■□□□ 1.56
LIMS2-212ENST00000466410 NLRP1Q9C000 1473 aa24.77■■□□□ 1.56
LIMS2-212ENST00000466410 RWDD1Q9H446 243 aaPredicted RBP24.76■■□□□ 1.55
LIMS2-212ENST00000466410 DZIP1LQ8IYY4 767 aaKnown RBP24.75■■□□□ 1.55
LIMS2-212ENST00000466410 CT47B1P0C2W7 299 aaPredicted RBP24.75■■□□□ 1.55
LIMS2-212ENST00000466410 CLTCQ00610 1675 aaKnown RBP24.75■■□□□ 1.55
LIMS2-212ENST00000466410 ANKRD26Q9UPS8 1709 aa24.75■■□□□ 1.55
LIMS2-212ENST00000466410 FTSJ3Q8IY81 847 aaKnown RBP24.74■■□□□ 1.55
LIMS2-212ENST00000466410 SMC4Q9NTJ3 1288 aa24.74■■□□□ 1.55
LIMS2-212ENST00000466410 MED14O60244 1454 aa24.74■■□□□ 1.55
LIMS2-212ENST00000466410 CDK19Q9BWU1 502 aa24.74■■□□□ 1.55
LIMS2-212ENST00000466410 KIF13AQ9H1H9 1805 aa24.74■■□□□ 1.55
LIMS2-212ENST00000466410 CABP1Q9NZU7 370 aa24.72■■□□□ 1.55
LIMS2-212ENST00000466410 ALKQ9UM73 1620 aa24.72■■□□□ 1.55
LIMS2-212ENST00000466410 SSH1Q8WYL5 1049 aa24.72■■□□□ 1.55
LIMS2-212ENST00000466410 HDGFL2Q7Z4V5 671 aaPredicted RBP24.71■■□□□ 1.55
LIMS2-212ENST00000466410 DIAPH1O60610 1272 aaKnown RBP24.71■■□□□ 1.55
LIMS2-212ENST00000466410 TRIM27P14373 513 aa24.71■■□□□ 1.55
LIMS2-212ENST00000466410 RIPK4P57078 832 aa24.7■■□□□ 1.55
LIMS2-212ENST00000466410 ARHGEF40Q8TER5 1519 aa24.69■■□□□ 1.54
LIMS2-212ENST00000466410 STAG3Q9UJ98 1225 aa24.69■■□□□ 1.54
LIMS2-212ENST00000466410 ZMYM3Q14202 1370 aa24.68■■□□□ 1.54
LIMS2-212ENST00000466410 PNPLA6Q8IY17 1366 aa24.68■■□□□ 1.54
LIMS2-212ENST00000466410 FRAT2O75474 233 aaPredicted RBP24.68■■□□□ 1.54
LIMS2-212ENST00000466410 GSE1Q14687 1217 aa24.68■■□□□ 1.54
LIMS2-212ENST00000466410 IL16Q14005 1332 aa24.68■■□□□ 1.54
LIMS2-212ENST00000466410 FBLN1P23142 703 aa24.66■■□□□ 1.54
LIMS2-212ENST00000466410 ATF7IPQ6VMQ6 1270 aa24.66■■□□□ 1.54
LIMS2-212ENST00000466410 NOB1Q9ULX3 412 aaKnown RBP24.65■■□□□ 1.54
LIMS2-212ENST00000466410 REREQ9P2R6 1566 aa24.65■■□□□ 1.54
LIMS2-212ENST00000466410 ITPRIPQ8IWB1 547 aa24.64■■□□□ 1.54
LIMS2-212ENST00000466410 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.64■■□□□ 1.54
LIMS2-212ENST00000466410 WAPLQ7Z5K2 1190 aa24.64■■□□□ 1.53
LIMS2-212ENST00000466410 KIF20BQ96Q89 1820 aa24.64■■□□□ 1.53
LIMS2-212ENST00000466410 DDX19BQ9UMR2 479 aa24.63■■□□□ 1.53
LIMS2-212ENST00000466410 AGLP35573 1532 aa24.63■■□□□ 1.53
LIMS2-212ENST00000466410 MLECQ14165 292 aa24.62■■□□□ 1.53
LIMS2-212ENST00000466410 TBC1D32Q96NH3 1257 aa24.62■■□□□ 1.53
LIMS2-212ENST00000466410 BECN1Q14457 450 aa24.62■■□□□ 1.53
LIMS2-212ENST00000466410 UPF2Q9HAU5 1272 aaKnown RBP24.62■■□□□ 1.53
LIMS2-212ENST00000466410 IL27Q8NEV9 243 aa24.61■■□□□ 1.53
LIMS2-212ENST00000466410 PNNQ9H307 717 aaKnown RBP24.61■■□□□ 1.53
LIMS2-212ENST00000466410 FCHSD2O94868 740 aa24.6■■□□□ 1.53
LIMS2-212ENST00000466410 POLKQ9UBT6 870 aa24.6■■□□□ 1.53
LIMS2-212ENST00000466410 HDAC1Q13547 482 aaPredicted RBP24.6■■□□□ 1.53
LIMS2-212ENST00000466410 TMEM57Q8N5G2 664 aa24.6■■□□□ 1.53
LIMS2-212ENST00000466410 LRRC7Q96NW7 1537 aa24.59■■□□□ 1.53
LIMS2-212ENST00000466410 PRKAR2BP31323 418 aa24.59■■□□□ 1.53
LIMS2-212ENST00000466410 RSPH6AQ9H0K4 717 aa24.58■■□□□ 1.53
LIMS2-212ENST00000466410 A2ML1A8K2U0 1454 aa24.57■■□□□ 1.52
LIMS2-212ENST00000466410 SLKQ9H2G2 1235 aaPredicted RBP24.56■■□□□ 1.52
LIMS2-212ENST00000466410 CDC42BPGQ6DT37 1551 aa24.56■■□□□ 1.52
LIMS2-212ENST00000466410 ZBTB40Q9NUA8 1239 aa24.56■■□□□ 1.52
LIMS2-212ENST00000466410 KIF16BQ96L93 1317 aa24.56■■□□□ 1.52
LIMS2-212ENST00000466410 FAM135BQ49AJ0 1406 aa24.55■■□□□ 1.52
LIMS2-212ENST00000466410 ATP7BP35670 1465 aa24.55■■□□□ 1.52
LIMS2-212ENST00000466410 DLC1Q96QB1 1528 aa24.54■■□□□ 1.52
LIMS2-212ENST00000466410 IPO8O15397 1037 aaKnown RBP24.54■■□□□ 1.52
LIMS2-212ENST00000466410 HMOX1P09601 288 aa24.54■■□□□ 1.52
LIMS2-212ENST00000466410 PHACTR3Q96KR7 559 aa24.54■■□□□ 1.52
LIMS2-212ENST00000466410 RIMS2Q9UQ26 1411 aa24.54■■□□□ 1.52
LIMS2-212ENST00000466410 SMC5Q8IY18 1101 aa24.53■■□□□ 1.52
LIMS2-212ENST00000466410 MAP2P11137 1827 aaKnown RBP24.53■■□□□ 1.52
LIMS2-212ENST00000466410 ALDH1L2Q3SY69 923 aa24.53■■□□□ 1.52
LIMS2-212ENST00000466410 TBC1D2Q9BYX2 928 aa24.52■■□□□ 1.52
LIMS2-212ENST00000466410 THUMPD2Q9BTF0 503 aaKnown RBP24.51■■□□□ 1.51
LIMS2-212ENST00000466410 EMILIN1Q9Y6C2 1016 aa24.51■■□□□ 1.51
LIMS2-212ENST00000466410 SETD1AO15047 1707 aaKnown RBP24.51■■□□□ 1.51
LIMS2-212ENST00000466410 ANTXR1Q9H6X2 564 aa24.51■■□□□ 1.51
LIMS2-212ENST00000466410 NFE2L2Q16236 605 aa24.49■■□□□ 1.51
LIMS2-212ENST00000466410 PPP6R1Q9UPN7 881 aa24.49■■□□□ 1.51
LIMS2-212ENST00000466410 SPATA31D1Q6ZQQ2 1576 aa24.49■■□□□ 1.51
LIMS2-212ENST00000466410 NME9Q86XW9 330 aa24.49■■□□□ 1.51
LIMS2-212ENST00000466410 ZRANB1Q9UGI0 708 aa24.49■■□□□ 1.51
LIMS2-212ENST00000466410 MFAP1P55081 439 aaKnown RBP24.48■■□□□ 1.51
LIMS2-212ENST00000466410 BRPF3Q9ULD4 1205 aa24.48■■□□□ 1.51
LIMS2-212ENST00000466410 CPSF1Q10570 1443 aaKnown RBP24.47■■□□□ 1.51
LIMS2-212ENST00000466410 WASLO00401 505 aaPredicted RBP24.47■■□□□ 1.51
LIMS2-212ENST00000466410 IL13P35225 146 aa24.46■■□□□ 1.51
LIMS2-212ENST00000466410 C22orf23Q9BZE7 217 aa24.46■■□□□ 1.51
LIMS2-212ENST00000466410 PPIP5K1Q6PFW1 1433 aa24.46■■□□□ 1.51
LIMS2-212ENST00000466410 EDC4Q6P2E9 1401 aaKnown RBP24.46■■□□□ 1.51
LIMS2-212ENST00000466410 BRPF1P55201 1214 aaPredicted RBP24.45■■□□□ 1.5
LIMS2-212ENST00000466410 TSPYL6Q8N831 410 aa24.45■■□□□ 1.5
LIMS2-212ENST00000466410 RTN4Q9NQC3 1192 aaKnown RBP24.45■■□□□ 1.5
LIMS2-212ENST00000466410 VAMP4O75379 141 aa24.45■■□□□ 1.5
LIMS2-212ENST00000466410 ZNF428Q96B54 188 aa24.45■■□□□ 1.5
LIMS2-212ENST00000466410 METP08581 1390 aa24.44■■□□□ 1.5
LIMS2-212ENST00000466410 NCKAP5LQ9HCH0 1330 aa24.44■■□□□ 1.5
LIMS2-212ENST00000466410 TXNDC2Q86VQ3 553 aa24.44■■□□□ 1.5
LIMS2-212ENST00000466410 NUCB1Q02818 461 aa24.44■■□□□ 1.5
LIMS2-212ENST00000466410 NRXN3Q9Y4C0 1643 aa24.42■■□□□ 1.5
LIMS2-212ENST00000466410 MRPL50Q8N5N7 158 aaKnown RBP24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms