RNA–Protein interactions for RNA: ENST00000465563.5

SMC4-205, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 747 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-205ENST00000465563 HPS1Q92902 700 aa12.9□□□□□ -0.34
SMC4-205ENST00000465563 RSPH6AQ9H0K4 717 aa12.9□□□□□ -0.34
SMC4-205ENST00000465563 QPCTQ16769 361 aa12.89□□□□□ -0.35
SMC4-205ENST00000465563 ZNF511Q8NB15 262 aa12.89□□□□□ -0.35
SMC4-205ENST00000465563 GMPR2Q9P2T1 348 aaKnown RBP12.88□□□□□ -0.35
SMC4-205ENST00000465563 LILRB3O75022 631 aa12.87□□□□□ -0.35
SMC4-205ENST00000465563 TSC1Q92574 1164 aa12.87□□□□□ -0.35
SMC4-205ENST00000465563 CLK2P49760 499 aaKnown RBP12.86□□□□□ -0.35
SMC4-205ENST00000465563 F12P00748 615 aaPredicted RBP12.85□□□□□ -0.35
SMC4-205ENST00000465563 MAP10Q9P2G4 905 aa12.85□□□□□ -0.35
SMC4-205ENST00000465563 WASF2Q9Y6W5 498 aa12.85□□□□□ -0.35
SMC4-205ENST00000465563 C11orf95C9JLR9 678 aaPredicted RBP12.84□□□□□ -0.35
SMC4-205ENST00000465563 VARSP26640 1264 aaKnown RBP12.84□□□□□ -0.35
SMC4-205ENST00000465563 ATP13A2Q9NQ11 1180 aa12.84□□□□□ -0.35
SMC4-205ENST00000465563 POLR3EQ9NVU0 708 aa12.84□□□□□ -0.35
SMC4-205ENST00000465563 PER1O15534 1290 aaPredicted RBP12.83□□□□□ -0.36
SMC4-205ENST00000465563 RTL5Q5HYW3 569 aaPredicted RBP12.81□□□□□ -0.36
SMC4-205ENST00000465563 HELBQ8NG08 1087 aaPredicted RBP12.81□□□□□ -0.36
SMC4-205ENST00000465563 PLEKHG3A1L390 1219 aa12.8□□□□□ -0.36
SMC4-205ENST00000465563 KDM4CQ9H3R0 1056 aa12.8□□□□□ -0.36
SMC4-205ENST00000465563 MPNDQ8N594 471 aa12.79□□□□□ -0.36
SMC4-205ENST00000465563 GPBP1L1Q9HC44 474 aaPredicted RBP12.79□□□□□ -0.36
SMC4-205ENST00000465563 SENP2Q9HC62 589 aa12.79□□□□□ -0.36
SMC4-205ENST00000465563 TLL2Q9Y6L7 1015 aa12.79□□□□□ -0.36
SMC4-205ENST00000465563 FAM174AQ8TBP5 190 aa12.78□□□□□ -0.36
SMC4-205ENST00000465563 FOXJ1Q92949 421 aa12.77□□□□□ -0.37
SMC4-205ENST00000465563 DDRGK1Q96HY6 314 aa12.77□□□□□ -0.37
SMC4-205ENST00000465563 SKIV2LQ15477 1246 aaKnown RBP12.76□□□□□ -0.37
SMC4-205ENST00000465563 ARMC2Q8NEN0 867 aa12.76□□□□□ -0.37
SMC4-205ENST00000465563 CAPN5O15484 640 aaPredicted RBP12.75□□□□□ -0.37
SMC4-205ENST00000465563 FAM117AQ9C073 453 aa12.75□□□□□ -0.37
SMC4-205ENST00000465563 AGERQ15109 404 aa12.74□□□□□ -0.37
SMC4-205ENST00000465563 SH3D19Q5HYK7 790 aa12.74□□□□□ -0.37
SMC4-205ENST00000465563 TRIM47Q96LD4 638 aa12.74□□□□□ -0.37
SMC4-205ENST00000465563 BPHLQ86WA6 291 aaPredicted RBP12.73□□□□□ -0.37
SMC4-205ENST00000465563 KIFC2Q96AC6 838 aa12.73□□□□□ -0.37
SMC4-205ENST00000465563 SNRPBP14678 240 aaKnown RBP12.72□□□□□ -0.37
SMC4-205ENST00000465563 NNTQ13423 1086 aa12.71□□□□□ -0.37
SMC4-205ENST00000465563 TREML4Q6UXN2 200 aa12.71□□□□□ -0.37
SMC4-205ENST00000465563 ATP1B4Q9UN42 357 aaPredicted RBP12.71□□□□□ -0.37
SMC4-205ENST00000465563 ARID5BQ14865 1188 aa12.7□□□□□ -0.38
SMC4-205ENST00000465563 NBPF14Q5TI25 921 aa12.7□□□□□ -0.38
SMC4-205ENST00000465563 CDK15Q96Q40 435 aa12.7□□□□□ -0.38
SMC4-205ENST00000465563 ADH1CP00326 375 aa12.69□□□□□ -0.38
SMC4-205ENST00000465563 CTDSPL2Q05D32 466 aa12.69□□□□□ -0.38
SMC4-205ENST00000465563 C4orf48Q5BLP8 95 aa12.69□□□□□ -0.38
SMC4-205ENST00000465563 PROCA1Q8NCQ7 364 aaPredicted RBP12.69□□□□□ -0.38
SMC4-205ENST00000465563 BMP1P13497 986 aa12.67□□□□□ -0.38
SMC4-205ENST00000465563 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.67□□□□□ -0.38
SMC4-205ENST00000465563 TRIM46Q7Z4K8 759 aa12.66□□□□□ -0.38
SMC4-205ENST00000465563 PPP2R2DQ66LE6 453 aa12.65□□□□□ -0.38
SMC4-205ENST00000465563 WDR4P57081 412 aaKnown RBP12.64□□□□□ -0.39
SMC4-205ENST00000465563 NR5A1Q13285 461 aa12.64□□□□□ -0.39
SMC4-205ENST00000465563 SH3RF1Q7Z6J0 888 aa12.64□□□□□ -0.39
SMC4-205ENST00000465563 GPKOWQ92917 476 aaPredicted RBP eCLIP12.64□□□□□ -0.391e-13■□□□□ 9.1
SMC4-205ENST00000465563 WFS1O76024 890 aa12.63□□□□□ -0.39
SMC4-205ENST00000465563 TIMP2P16035 220 aa12.63□□□□□ -0.39
SMC4-205ENST00000465563 LCE2AQ5TA79 106 aaPredicted RBP12.63□□□□□ -0.39
SMC4-205ENST00000465563 FBXO31Q5XUX0 539 aaPredicted RBP12.63□□□□□ -0.39
SMC4-205ENST00000465563 SH3BP5LQ7L8J4 393 aa12.63□□□□□ -0.39
SMC4-205ENST00000465563 LRRN4Q8WUT4 740 aa12.63□□□□□ -0.39
SMC4-205ENST00000465563 C1QTNF2Q9BXJ5 285 aa12.63□□□□□ -0.39
SMC4-205ENST00000465563 MAGEB6P1A0A0J9YX57 407 aa12.61□□□□□ -0.39
SMC4-205ENST00000465563 GRM5P41594 1212 aa12.61□□□□□ -0.39
SMC4-205ENST00000465563 KLF16Q9BXK1 252 aaPredicted RBP12.61□□□□□ -0.39
SMC4-205ENST00000465563 AP1G2O75843 785 aa12.59□□□□□ -0.39
SMC4-205ENST00000465563 NFX1Q12986 1120 aaKnown RBP12.59□□□□□ -0.39
SMC4-205ENST00000465563 TRMT44Q8IYL2 757 aaKnown RBP12.59□□□□□ -0.39
SMC4-205ENST00000465563 FKBPLQ9UIM3 349 aa12.59□□□□□ -0.39
SMC4-205ENST00000465563 TERTO14746 1132 aaKnown RBP12.58□□□□□ -0.4
SMC4-205ENST00000465563 NR3C2P08235 984 aa12.58□□□□□ -0.4
SMC4-205ENST00000465563 SCARF1Q14162 830 aa12.58□□□□□ -0.4
SMC4-205ENST00000465563 MRPL14Q6P1L8 145 aaKnown RBP12.58□□□□□ -0.4
SMC4-205ENST00000465563 ZFP42Q96MM3 310 aa12.58□□□□□ -0.4
SMC4-205ENST00000465563 CARD14Q9BXL6 1004 aa12.58□□□□□ -0.4
SMC4-205ENST00000465563 MAP4K5Q9Y4K4 846 aa12.58□□□□□ -0.4
SMC4-205ENST00000465563 ZIC2O95409 532 aaPredicted RBP12.57□□□□□ -0.4
SMC4-205ENST00000465563 PDXDC2PQ6P474 469 aa12.57□□□□□ -0.4
SMC4-205ENST00000465563 VASH1Q7L8A9 365 aaPredicted RBP12.57□□□□□ -0.4
SMC4-205ENST00000465563 NR6A1Q15406 480 aa12.56□□□□□ -0.4
SMC4-205ENST00000465563 NEUROD2Q15784 382 aa12.55□□□□□ -0.4
SMC4-205ENST00000465563 ITPKCQ96DU7 683 aa12.55□□□□□ -0.4
SMC4-205ENST00000465563 ZFAND3Q9H8U3 227 aa12.55□□□□□ -0.4
SMC4-205ENST00000465563 ZC3H4Q9UPT8 1303 aaKnown RBP12.55□□□□□ -0.4
SMC4-205ENST00000465563 FSHRP23945 695 aa12.54□□□□□ -0.4
SMC4-205ENST00000465563 ERFEQ4G0M1 354 aa12.54□□□□□ -0.4
SMC4-205ENST00000465563 ARHGAP9Q9BRR9 750 aa12.54□□□□□ -0.4
SMC4-205ENST00000465563 GOPCQ9HD26 462 aa12.54□□□□□ -0.4
SMC4-205ENST00000465563 PURBQ96QR8 312 aaKnown RBP12.53□□□□□ -0.4
SMC4-205ENST00000465563 PCMTD1Q96MG8 357 aaPredicted RBP12.52□□□□□ -0.41
SMC4-205ENST00000465563 RFC5P40937 340 aa12.51□□□□□ -0.41
SMC4-205ENST00000465563 ZBTB33Q86T24 672 aa12.51□□□□□ -0.41
SMC4-205ENST00000465563 NXF1Q9UBU9 619 aaKnown RBP12.51□□□□□ -0.41
SMC4-205ENST00000465563 USP17L8P0C7I0 530 aa12.5□□□□□ -0.41
SMC4-205ENST00000465563 PNMA1Q8ND90 353 aa12.5□□□□□ -0.41
SMC4-205ENST00000465563 PTK2Q05397 1052 aa12.49□□□□□ -0.41
SMC4-205ENST00000465563 CCDC116Q8IYX3 515 aa12.49□□□□□ -0.41
SMC4-205ENST00000465563 IL27Q8NEV9 243 aa12.49□□□□□ -0.41
SMC4-205ENST00000465563 SLC16A10Q8TF71 515 aa12.49□□□□□ -0.41
SMC4-205ENST00000465563 SLC10A4Q96EP9 437 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms