RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 HAP1P54257 671 aaPredicted RBP26.64■■□□□ 1.86
COL9A3-203ENST00000462700 FNBP4Q8N3X1 1017 aaPredicted RBP26.64■■□□□ 1.86
COL9A3-203ENST00000462700 ST20-MTHFSA0A0A6YYL1 179 aa26.61■■□□□ 1.85
COL9A3-203ENST00000462700 USP21Q9UK80 565 aa26.61■■□□□ 1.85
COL9A3-203ENST00000462700 USP47Q96K76 1375 aa26.59■■□□□ 1.85
COL9A3-203ENST00000462700 TESK2Q96S53 571 aa26.59■■□□□ 1.85
COL9A3-203ENST00000462700 QTRT2Q9H974 415 aaKnown RBP26.59■■□□□ 1.85
COL9A3-203ENST00000462700 BRD4O60885 1362 aaPredicted RBP26.58■■□□□ 1.85
COL9A3-203ENST00000462700 USP6P35125 1406 aa26.58■■□□□ 1.85
COL9A3-203ENST00000462700 RXRBP28702 533 aa26.58■■□□□ 1.85
COL9A3-203ENST00000462700 BCL9LQ86UU0 1499 aa26.57■■□□□ 1.84
COL9A3-203ENST00000462700 CRYBG1Q9Y4K1 1723 aa26.57■■□□□ 1.84
COL9A3-203ENST00000462700 SLIT2O94813 1529 aa26.56■■□□□ 1.84
COL9A3-203ENST00000462700 TRPC5Q9UL62 973 aaPredicted RBP26.54■■□□□ 1.84
COL9A3-203ENST00000462700 ATRNO75882 1429 aa26.54■■□□□ 1.84
COL9A3-203ENST00000462700 SLC24A1O60721 1099 aa26.53■■□□□ 1.84
COL9A3-203ENST00000462700 NUTM2GQ5VZR2 741 aa26.53■■□□□ 1.84
COL9A3-203ENST00000462700 ABTB2Q8N961 1025 aa26.53■■□□□ 1.84
COL9A3-203ENST00000462700 PUS7Q96PZ0 661 aaKnown RBP26.53■■□□□ 1.84
COL9A3-203ENST00000462700 SSH2Q76I76 1423 aa26.53■■□□□ 1.84
COL9A3-203ENST00000462700 RBM6P78332 1123 aaKnown RBP26.52■■□□□ 1.84
COL9A3-203ENST00000462700 CPSF1Q10570 1443 aaKnown RBP26.52■■□□□ 1.84
COL9A3-203ENST00000462700 ZNF692Q9BU19 519 aaPredicted RBP26.52■■□□□ 1.84
COL9A3-203ENST00000462700 PHRF1Q9P1Y6 1649 aaKnown RBP26.51■■□□□ 1.83
COL9A3-203ENST00000462700 CDK12Q9NYV4 1490 aaPredicted RBP26.51■■□□□ 1.83
COL9A3-203ENST00000462700 UNC5CLQ8IV45 518 aa26.5■■□□□ 1.83
COL9A3-203ENST00000462700 AKAP12Q02952 1782 aa26.5■■□□□ 1.83
COL9A3-203ENST00000462700 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.5■■□□□ 1.83
COL9A3-203ENST00000462700 FAM83GA6ND36 823 aa26.49■■□□□ 1.83
COL9A3-203ENST00000462700 PLCH1Q4KWH8 1693 aa26.49■■□□□ 1.83
COL9A3-203ENST00000462700 USP19O94966 1318 aa26.48■■□□□ 1.83
COL9A3-203ENST00000462700 CD163L1Q9NR16 1453 aa26.48■■□□□ 1.83
COL9A3-203ENST00000462700 NLRP13Q86W25 1043 aa26.47■■□□□ 1.83
COL9A3-203ENST00000462700 TMC1Q8TDI8 760 aa26.47■■□□□ 1.83
COL9A3-203ENST00000462700 KTN1Q86UP2 1357 aaKnown RBP26.46■■□□□ 1.83
COL9A3-203ENST00000462700 NRKQ7Z2Y5 1582 aa26.46■■□□□ 1.83
COL9A3-203ENST00000462700 NWD2Q9ULI1 1742 aa26.46■■□□□ 1.83
COL9A3-203ENST00000462700 RGS12O14924 1447 aa26.46■■□□□ 1.83
COL9A3-203ENST00000462700 COL14A1Q05707 1796 aaKnown RBP26.46■■□□□ 1.83
COL9A3-203ENST00000462700 TTC21BQ7Z4L5 1316 aa26.45■■□□□ 1.83
COL9A3-203ENST00000462700 TMF1P82094 1093 aa26.45■■□□□ 1.82
COL9A3-203ENST00000462700 SLC12A5Q9H2X9 1139 aa26.45■■□□□ 1.82
COL9A3-203ENST00000462700 PRDM11Q9NQV5 511 aa26.44■■□□□ 1.82
COL9A3-203ENST00000462700 MON2Q7Z3U7 1717 aa26.44■■□□□ 1.82
COL9A3-203ENST00000462700 KIAA0232Q92628 1395 aa26.44■■□□□ 1.82
COL9A3-203ENST00000462700 PIK3C2AO00443 1686 aa26.44■■□□□ 1.82
COL9A3-203ENST00000462700 TTC21AQ8NDW8 1320 aa26.43■■□□□ 1.82
COL9A3-203ENST00000462700 NINLQ9Y2I6 1382 aa26.43■■□□□ 1.82
COL9A3-203ENST00000462700 NLRP6P59044 892 aa26.42■■□□□ 1.82
COL9A3-203ENST00000462700 GJD4Q96KN9 370 aaPredicted RBP26.42■■□□□ 1.82
COL9A3-203ENST00000462700 ZC3H6P61129 1189 aaKnown RBP26.41■■□□□ 1.82
COL9A3-203ENST00000462700 HDGFL2Q7Z4V5 671 aaPredicted RBP26.41■■□□□ 1.82
COL9A3-203ENST00000462700 BTG4Q9NY30 223 aa26.41■■□□□ 1.82
COL9A3-203ENST00000462700 NRAPQ86VF7 1730 aa26.4■■□□□ 1.82
COL9A3-203ENST00000462700 GCP02774 474 aa26.4■■□□□ 1.82
COL9A3-203ENST00000462700 VPS72Q15906 364 aa26.4■■□□□ 1.82
COL9A3-203ENST00000462700 TERF2IPQ9NYB0 399 aa26.4■■□□□ 1.82
COL9A3-203ENST00000462700 A0A1W2PP64 1363 aa26.4■■□□□ 1.82
COL9A3-203ENST00000462700 SLIT3O75094 1523 aa26.39■■□□□ 1.82
COL9A3-203ENST00000462700 CPDO75976 1380 aa26.39■■□□□ 1.82
COL9A3-203ENST00000462700 GLI3P10071 1580 aa26.38■■□□□ 1.81
COL9A3-203ENST00000462700 CHRNA2Q15822 529 aa26.38■■□□□ 1.81
COL9A3-203ENST00000462700 EDC4Q6P2E9 1401 aaKnown RBP26.37■■□□□ 1.81
COL9A3-203ENST00000462700 CDCA8Q53HL2 280 aa26.36■■□□□ 1.81
COL9A3-203ENST00000462700 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.35■■□□□ 1.81
COL9A3-203ENST00000462700 EIF4G2P78344 907 aaKnown RBP eCLIP26.34■■□□□ 1.81
COL9A3-203ENST00000462700 CCDC9Q9Y3X0 531 aaKnown RBP26.34■■□□□ 1.81
COL9A3-203ENST00000462700 USP31Q70CQ4 1352 aa26.32■■□□□ 1.8
COL9A3-203ENST00000462700 ANKRD36BQ8N2N9 1353 aa26.32■■□□□ 1.8
COL9A3-203ENST00000462700 HSPA5P11021 654 aaKnown RBP26.31■■□□□ 1.8
COL9A3-203ENST00000462700 NME9Q86XW9 330 aa26.31■■□□□ 1.8
COL9A3-203ENST00000462700 LMO7Q8WWI1 1683 aa26.31■■□□□ 1.8
COL9A3-203ENST00000462700 KCNH5Q8NCM2 988 aa26.29■■□□□ 1.8
COL9A3-203ENST00000462700 ZRANB1Q9UGI0 708 aa26.29■■□□□ 1.8
COL9A3-203ENST00000462700 USP54Q70EL1 1684 aa26.28■■□□□ 1.8
COL9A3-203ENST00000462700 CAMTA1Q9Y6Y1 1673 aa26.28■■□□□ 1.8
COL9A3-203ENST00000462700 STRN4Q9NRL3 753 aa26.27■■□□□ 1.8
COL9A3-203ENST00000462700 NFAT5O94916 1531 aa26.26■■□□□ 1.79
COL9A3-203ENST00000462700 AATKQ6ZMQ8 1374 aa26.26■■□□□ 1.79
COL9A3-203ENST00000462700 SPATA31A5Q5VU36 1347 aa26.26■■□□□ 1.79
COL9A3-203ENST00000462700 SPATA31A7Q8IWB4 1347 aa26.26■■□□□ 1.79
COL9A3-203ENST00000462700 ZBTB7CA1YPR0 619 aa26.25■■□□□ 1.79
COL9A3-203ENST00000462700 SOX12O15370 315 aa26.25■■□□□ 1.79
COL9A3-203ENST00000462700 ONECUT3O60422 494 aaPredicted RBP26.25■■□□□ 1.79
COL9A3-203ENST00000462700 MYOM1P52179 1685 aa26.25■■□□□ 1.79
COL9A3-203ENST00000462700 OVOS2A0A0J9YW53 1432 aa26.24■■□□□ 1.79
COL9A3-203ENST00000462700 OVOS2Q6IE36 1432 aa26.24■■□□□ 1.79
COL9A3-203ENST00000462700 ARHGEF25Q86VW2 580 aa26.24■■□□□ 1.79
COL9A3-203ENST00000462700 EVA1CP58658 441 aa26.23■■□□□ 1.79
COL9A3-203ENST00000462700 SEPT12Q8IYM1 358 aa26.23■■□□□ 1.79
COL9A3-203ENST00000462700 COL5A2P05997 1499 aaPredicted RBP26.23■■□□□ 1.79
COL9A3-203ENST00000462700 UPF1Q92900 1129 aaKnown RBP eCLIP26.22■■□□□ 1.797e-13■□□□□ 10.1
COL9A3-203ENST00000462700 SPATA31A1Q5TZJ5 1347 aa26.21■■□□□ 1.79
COL9A3-203ENST00000462700 FAM98CQ17RN3 349 aaKnown RBP26.21■■□□□ 1.79
COL9A3-203ENST00000462700 COL18A1P39060 1754 aa26.2■■□□□ 1.78
COL9A3-203ENST00000462700 LARP1Q6PKG0 1096 aaKnown RBP26.19■■□□□ 1.78
COL9A3-203ENST00000462700 A0A0G2JS52 829 aa26.17■■□□□ 1.78
COL9A3-203ENST00000462700 MYT1Q01538 1121 aa26.17■■□□□ 1.78
COL9A3-203ENST00000462700 AXIN2Q9Y2T1 843 aa26.17■■□□□ 1.78
COL9A3-203ENST00000462700 ABCC6O95255 1503 aa26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms