RNA–Protein interactions for RNA: ENST00000461171.1

CD40-203, Transcript of CD40 molecule, humanhuman

TSL 3

Gene CD40, Length 710 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-203ENST00000461171 SIN3AQ96ST3 1273 aa13.96□□□□□ -0.17
CD40-203ENST00000461171 CDK19Q9BWU1 502 aa13.96□□□□□ -0.17
CD40-203ENST00000461171 ATAD2Q6PL18 1390 aa13.96□□□□□ -0.18
CD40-203ENST00000461171 CENPJQ9HC77 1338 aaPredicted RBP13.95□□□□□ -0.18
CD40-203ENST00000461171 EP400Q96L91 3159 aa13.95□□□□□ -0.18
CD40-203ENST00000461171 HAP1P54257 671 aaPredicted RBP13.95□□□□□ -0.18
CD40-203ENST00000461171 NGDNQ8NEJ9 315 aaKnown RBP13.95□□□□□ -0.18
CD40-203ENST00000461171 CCDC61Q9Y6R9 512 aa13.94□□□□□ -0.18
CD40-203ENST00000461171 COL14A1Q05707 1796 aaKnown RBP13.94□□□□□ -0.18
CD40-203ENST00000461171 PLEKHG3A1L390 1219 aa13.93□□□□□ -0.18
CD40-203ENST00000461171 VPS72Q15906 364 aa13.93□□□□□ -0.18
CD40-203ENST00000461171 PHRF1Q9P1Y6 1649 aaKnown RBP13.93□□□□□ -0.18
CD40-203ENST00000461171 FAM83GA6ND36 823 aa13.92□□□□□ -0.18
CD40-203ENST00000461171 ACEP12821 1306 aa13.91□□□□□ -0.18
CD40-203ENST00000461171 PLEKHG5O94827 1062 aa13.91□□□□□ -0.18
CD40-203ENST00000461171 PPIP5K1Q6PFW1 1433 aa13.9□□□□□ -0.18
CD40-203ENST00000461171 NRKQ7Z2Y5 1582 aa13.89□□□□□ -0.19
CD40-203ENST00000461171 ROCK2O75116 1388 aaKnown RBP13.89□□□□□ -0.19
CD40-203ENST00000461171 ONECUT3O60422 494 aaPredicted RBP13.89□□□□□ -0.19
CD40-203ENST00000461171 PAK3O75914 559 aaPredicted RBP13.89□□□□□ -0.19
CD40-203ENST00000461171 NEUROD1Q13562 356 aa13.89□□□□□ -0.19
CD40-203ENST00000461171 NBPF8Q3BBV2 869 aa13.89□□□□□ -0.19
CD40-203ENST00000461171 BRWD3Q6RI45 1802 aa13.89□□□□□ -0.19
CD40-203ENST00000461171 SRPK2P78362 688 aaKnown RBP13.88□□□□□ -0.19
CD40-203ENST00000461171 CABP2Q9NPB3 220 aa13.88□□□□□ -0.19
CD40-203ENST00000461171 USP19O94966 1318 aa13.88□□□□□ -0.19
CD40-203ENST00000461171 BTG4Q9NY30 223 aa13.87□□□□□ -0.19
CD40-203ENST00000461171 BRD4O60885 1362 aaPredicted RBP13.86□□□□□ -0.19
CD40-203ENST00000461171 KIAA0232Q92628 1395 aa13.86□□□□□ -0.19
CD40-203ENST00000461171 SBNO2Q9Y2G9 1366 aa13.86□□□□□ -0.19
CD40-203ENST00000461171 SEPT12Q8IYM1 358 aa13.86□□□□□ -0.19
CD40-203ENST00000461171 PRDM11Q9NQV5 511 aa13.86□□□□□ -0.19
CD40-203ENST00000461171 USP6P35125 1406 aa13.86□□□□□ -0.19
CD40-203ENST00000461171 SSH2Q76I76 1423 aa13.86□□□□□ -0.19
CD40-203ENST00000461171 THSD7AQ9UPZ6 1657 aa13.85□□□□□ -0.19
CD40-203ENST00000461171 LMO7Q8WWI1 1683 aa13.85□□□□□ -0.19
CD40-203ENST00000461171 CPDO75976 1380 aa13.84□□□□□ -0.19
CD40-203ENST00000461171 NUTM2GQ5VZR2 741 aa13.84□□□□□ -0.19
CD40-203ENST00000461171 SPATA31A5Q5VU36 1347 aa13.84□□□□□ -0.19
CD40-203ENST00000461171 EVC2Q86UK5 1308 aa13.84□□□□□ -0.19
CD40-203ENST00000461171 SPATA31A7Q8IWB4 1347 aa13.84□□□□□ -0.19
CD40-203ENST00000461171 BLMP54132 1417 aaPredicted RBP13.83□□□□□ -0.2
CD40-203ENST00000461171 CCDC125Q86Z20 511 aa13.83□□□□□ -0.2
CD40-203ENST00000461171 CCDC9Q9Y3X0 531 aaKnown RBP13.83□□□□□ -0.2
CD40-203ENST00000461171 PIK3C2AO00443 1686 aa13.82□□□□□ -0.2
CD40-203ENST00000461171 SLIT3O75094 1523 aa13.82□□□□□ -0.2
CD40-203ENST00000461171 TRIM26Q12899 539 aaPredicted RBP13.82□□□□□ -0.2
CD40-203ENST00000461171 ABTB2Q8N961 1025 aa13.82□□□□□ -0.2
CD40-203ENST00000461171 CABP1Q9NZU7 370 aa13.82□□□□□ -0.2
CD40-203ENST00000461171 TONSLQ96HA7 1378 aa13.82□□□□□ -0.2
CD40-203ENST00000461171 CHRNA2Q15822 529 aa13.81□□□□□ -0.2
CD40-203ENST00000461171 CAMTA1Q9Y6Y1 1673 aa13.81□□□□□ -0.2
CD40-203ENST00000461171 AKAP12Q02952 1782 aa13.81□□□□□ -0.2
CD40-203ENST00000461171 ZC3H6P61129 1189 aaKnown RBP13.8□□□□□ -0.2
CD40-203ENST00000461171 FAM98CQ17RN3 349 aaKnown RBP13.8□□□□□ -0.2
CD40-203ENST00000461171 KRT27Q7Z3Y8 459 aa13.8□□□□□ -0.2
CD40-203ENST00000461171 SPATA31A1Q5TZJ5 1347 aa13.8□□□□□ -0.2
CD40-203ENST00000461171 CPSF1Q10570 1443 aaKnown RBP13.8□□□□□ -0.2
CD40-203ENST00000461171 NLRP13Q86W25 1043 aa13.79□□□□□ -0.2
CD40-203ENST00000461171 GCP02774 474 aa13.78□□□□□ -0.2
CD40-203ENST00000461171 CARD11Q9BXL7 1154 aa13.78□□□□□ -0.2
CD40-203ENST00000461171 MON2Q7Z3U7 1717 aa13.78□□□□□ -0.2
CD40-203ENST00000461171 COL5A2P05997 1499 aaPredicted RBP13.77□□□□□ -0.21
CD40-203ENST00000461171 SRCAPQ6ZRS2 3230 aa13.76□□□□□ -0.21
CD40-203ENST00000461171 CD163L1Q9NR16 1453 aa13.76□□□□□ -0.21
CD40-203ENST00000461171 RNF39Q9H2S5 420 aa13.76□□□□□ -0.21
CD40-203ENST00000461171 TTC21BQ7Z4L5 1316 aa13.75□□□□□ -0.21
CD40-203ENST00000461171 A0A0G2JS52 829 aa13.75□□□□□ -0.21
CD40-203ENST00000461171 MYT1Q01538 1121 aa13.75□□□□□ -0.21
CD40-203ENST00000461171 STRN4Q9NRL3 753 aa13.75□□□□□ -0.21
CD40-203ENST00000461171 COL18A1P39060 1754 aa13.75□□□□□ -0.21
CD40-203ENST00000461171 USP54Q70EL1 1684 aa13.75□□□□□ -0.21
CD40-203ENST00000461171 AATKQ6ZMQ8 1374 aa13.74□□□□□ -0.21
CD40-203ENST00000461171 NLRP6P59044 892 aa13.74□□□□□ -0.21
CD40-203ENST00000461171 BARGINQ6ZT62 677 aa13.74□□□□□ -0.21
CD40-203ENST00000461171 ZNF692Q9BU19 519 aaPredicted RBP13.74□□□□□ -0.21
CD40-203ENST00000461171 NFAT5O94916 1531 aa13.74□□□□□ -0.21
CD40-203ENST00000461171 TTC21AQ8NDW8 1320 aa13.73□□□□□ -0.21
CD40-203ENST00000461171 LARP1Q6PKG0 1096 aaKnown RBP13.73□□□□□ -0.21
CD40-203ENST00000461171 DEFB132Q7Z7B7 95 aa13.73□□□□□ -0.21
CD40-203ENST00000461171 RGPD1P0DJD0 1748 aa13.73□□□□□ -0.21
CD40-203ENST00000461171 TNS1Q9HBL0 1735 aaKnown RBP13.73□□□□□ -0.21
CD40-203ENST00000461171 KTN1Q86UP2 1357 aaKnown RBP13.72□□□□□ -0.21
CD40-203ENST00000461171 TESK2Q96S53 571 aa13.72□□□□□ -0.21
CD40-203ENST00000461171 DISP2A7MBM2 1401 aa13.72□□□□□ -0.21
CD40-203ENST00000461171 CRB1P82279 1406 aa13.72□□□□□ -0.21
CD40-203ENST00000461171 ABCC6O95255 1503 aa13.71□□□□□ -0.21
CD40-203ENST00000461171 PARP4Q9UKK3 1724 aaKnown RBP13.71□□□□□ -0.21
CD40-203ENST00000461171 TCP11L2Q8N4U5 519 aa13.71□□□□□ -0.21
CD40-203ENST00000461171 ZRANB1Q9UGI0 708 aa13.71□□□□□ -0.21
CD40-203ENST00000461171 USP31Q70CQ4 1352 aa13.71□□□□□ -0.22
CD40-203ENST00000461171 EVA1CP58658 441 aa13.7□□□□□ -0.22
CD40-203ENST00000461171 SF3B2Q13435 895 aaKnown RBP13.7□□□□□ -0.22
CD40-203ENST00000461171 FAM182BQ5T319 152 aa13.7□□□□□ -0.22
CD40-203ENST00000461171 PUS7Q96PZ0 661 aaKnown RBP13.7□□□□□ -0.22
CD40-203ENST00000461171 USP35Q9P2H5 1018 aa13.7□□□□□ -0.22
CD40-203ENST00000461171 DCAF8L1A6NGE4 600 aa13.69□□□□□ -0.22
CD40-203ENST00000461171 ARHGEF25Q86VW2 580 aa13.69□□□□□ -0.22
CD40-203ENST00000461171 THRAP3Q9Y2W1 955 aaKnown RBP13.69□□□□□ -0.22
CD40-203ENST00000461171 A0A1W2PP64 1363 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms