RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 NEUROD1Q13562 356 aa18.05■□□□□ 0.48
HDAC4-207ENST00000461113 PMFBP1Q8TBY8 1022 aa18.05■□□□□ 0.48
HDAC4-207ENST00000461113 STAC3Q96MF2 364 aa18.05■□□□□ 0.48
HDAC4-207ENST00000461113 NRAPQ86VF7 1730 aa18.05■□□□□ 0.48
HDAC4-207ENST00000461113 NRXN1Q9ULB1 1477 aa18.05■□□□□ 0.48
HDAC4-207ENST00000461113 SPATA31E1Q6ZUB1 1445 aa18.04■□□□□ 0.48
HDAC4-207ENST00000461113 ABCA3Q99758 1704 aa18.03■□□□□ 0.48
HDAC4-207ENST00000461113 THSD7AQ9UPZ6 1657 aa18.03■□□□□ 0.48
HDAC4-207ENST00000461113 PPLO60437 1756 aa18.02■□□□□ 0.47
HDAC4-207ENST00000461113 SPATA31A1Q5TZJ5 1347 aa18.01■□□□□ 0.47
HDAC4-207ENST00000461113 CCER1Q8TC90 406 aaPredicted RBP18.01■□□□□ 0.47
HDAC4-207ENST00000461113 DCAF11Q8TEB1 546 aa18.01■□□□□ 0.47
HDAC4-207ENST00000461113 YTHDC2Q9H6S0 1430 aaKnown RBP18■□□□□ 0.47
HDAC4-207ENST00000461113 SIRT1Q96EB6 747 aa18■□□□□ 0.47
HDAC4-207ENST00000461113 SIN3AQ96ST3 1273 aa18■□□□□ 0.47
HDAC4-207ENST00000461113 PRDM11Q9NQV5 511 aa18■□□□□ 0.47
HDAC4-207ENST00000461113 KDM2AQ9Y2K7 1162 aa18■□□□□ 0.47
HDAC4-207ENST00000461113 COL14A1Q05707 1796 aaKnown RBP17.99■□□□□ 0.47
HDAC4-207ENST00000461113 SAFB2Q14151 953 aaKnown RBP eCLIP17.99■□□□□ 0.47
HDAC4-207ENST00000461113 STRN4Q9NRL3 753 aa17.98■□□□□ 0.47
HDAC4-207ENST00000461113 CLSPNQ9HAW4 1339 aa17.98■□□□□ 0.47
HDAC4-207ENST00000461113 C1QTNF8P60827 252 aa17.97■□□□□ 0.47
HDAC4-207ENST00000461113 PDE3BQ13370 1112 aa17.97■□□□□ 0.47
HDAC4-207ENST00000461113 USP35Q9P2H5 1018 aa17.96■□□□□ 0.47
HDAC4-207ENST00000461113 GPRASP1Q5JY77 1395 aa17.95■□□□□ 0.46
HDAC4-207ENST00000461113 CHRNA2Q15822 529 aa17.95■□□□□ 0.46
HDAC4-207ENST00000461113 NUP188Q5SRE5 1749 aa17.95■□□□□ 0.46
HDAC4-207ENST00000461113 TONSLQ96HA7 1378 aa17.94■□□□□ 0.46
HDAC4-207ENST00000461113 RREB1Q92766 1687 aa17.94■□□□□ 0.46
HDAC4-207ENST00000461113 CAMTA1Q9Y6Y1 1673 aa17.94■□□□□ 0.46
HDAC4-207ENST00000461113 PRAM1Q96QH2 718 aa17.94■□□□□ 0.46
HDAC4-207ENST00000461113 KNDC1Q76NI1 1749 aa17.94■□□□□ 0.46
HDAC4-207ENST00000461113 RGPD8O14715 1765 aaPredicted RBP17.93■□□□□ 0.46
HDAC4-207ENST00000461113 PIK3C2GO75747 1445 aa17.92■□□□□ 0.46
HDAC4-207ENST00000461113 ANKARQ7Z5J8 1434 aa17.92■□□□□ 0.46
HDAC4-207ENST00000461113 PAK3O75914 559 aaPredicted RBP17.92■□□□□ 0.46
HDAC4-207ENST00000461113 IFT172Q9UG01 1749 aa17.92■□□□□ 0.46
HDAC4-207ENST00000461113 KIAA0232Q92628 1395 aa17.91■□□□□ 0.46
HDAC4-207ENST00000461113 BARGINQ6ZT62 677 aa17.91■□□□□ 0.46
HDAC4-207ENST00000461113 L3MBTL2Q969R5 705 aa17.91■□□□□ 0.46
HDAC4-207ENST00000461113 ZBTB7AO95365 584 aa17.89■□□□□ 0.45
HDAC4-207ENST00000461113 EVA1CP58658 441 aa17.89■□□□□ 0.45
HDAC4-207ENST00000461113 ZC3H6P61129 1189 aaKnown RBP17.89■□□□□ 0.45
HDAC4-207ENST00000461113 PDGFDQ9GZP0 370 aaPredicted RBP17.89■□□□□ 0.45
HDAC4-207ENST00000461113 C14orf93Q9H972 538 aaKnown RBP17.89■□□□□ 0.45
HDAC4-207ENST00000461113 ANO8Q9HCE9 1232 aaPredicted RBP17.89■□□□□ 0.45
HDAC4-207ENST00000461113 POGKQ9P215 609 aa17.89■□□□□ 0.45
HDAC4-207ENST00000461113 TRPM3Q9HCF6 1732 aaPredicted RBP17.89■□□□□ 0.45
HDAC4-207ENST00000461113 CFAP70Q5T0N1 1121 aa17.88■□□□□ 0.45
HDAC4-207ENST00000461113 HIRIP3Q9BW71 556 aaPredicted RBP17.88■□□□□ 0.45
HDAC4-207ENST00000461113 ALS2Q96Q42 1657 aa17.87■□□□□ 0.45
HDAC4-207ENST00000461113 NGDNQ8NEJ9 315 aaKnown RBP17.87■□□□□ 0.45
HDAC4-207ENST00000461113 PTGER2P43116 358 aa17.86■□□□□ 0.45
HDAC4-207ENST00000461113 LARP1Q6PKG0 1096 aaKnown RBP17.86■□□□□ 0.45
HDAC4-207ENST00000461113 TIMELESSQ9UNS1 1208 aa17.86■□□□□ 0.45
HDAC4-207ENST00000461113 ATF5Q9Y2D1 282 aaPredicted RBP17.86■□□□□ 0.45
HDAC4-207ENST00000461113 PRR36Q9H6K5 1346 aa17.86■□□□□ 0.45
HDAC4-207ENST00000461113 NRKQ7Z2Y5 1582 aa17.86■□□□□ 0.45
HDAC4-207ENST00000461113 UTRNP46939 3433 aa17.86■□□□□ 0.45
HDAC4-207ENST00000461113 SSH2Q76I76 1423 aa17.85■□□□□ 0.45
HDAC4-207ENST00000461113 TCP11L2Q8N4U5 519 aa17.85■□□□□ 0.45
HDAC4-207ENST00000461113 SYT17Q9BSW7 474 aa17.84■□□□□ 0.45
HDAC4-207ENST00000461113 FHDC1Q9C0D6 1143 aaPredicted RBP17.84■□□□□ 0.45
HDAC4-207ENST00000461113 PLSCR1O15162 318 aa17.83■□□□□ 0.44
HDAC4-207ENST00000461113 NUTM2GQ5VZR2 741 aa17.83■□□□□ 0.44
HDAC4-207ENST00000461113 BCL11BQ9C0K0 894 aaPredicted RBP17.83■□□□□ 0.44
HDAC4-207ENST00000461113 MINK1Q8N4C8 1332 aaPredicted RBP17.82■□□□□ 0.44
HDAC4-207ENST00000461113 CRYBG1Q9Y4K1 1723 aa17.81■□□□□ 0.44
HDAC4-207ENST00000461113 C11orf95C9JLR9 678 aaPredicted RBP17.8■□□□□ 0.44
HDAC4-207ENST00000461113 EIF3AQ14152 1382 aaKnown RBP17.79■□□□□ 0.44
HDAC4-207ENST00000461113 PTF1AQ7RTS3 328 aa17.79■□□□□ 0.44
HDAC4-207ENST00000461113 THRAP3Q9Y2W1 955 aaKnown RBP17.79■□□□□ 0.44
HDAC4-207ENST00000461113 MYOM1P52179 1685 aa17.78■□□□□ 0.44
HDAC4-207ENST00000461113 WASLO00401 505 aaPredicted RBP17.78■□□□□ 0.44
HDAC4-207ENST00000461113 GIGYF1O75420 1035 aaPredicted RBP17.78■□□□□ 0.44
HDAC4-207ENST00000461113 PROM2Q8N271 834 aa17.78■□□□□ 0.44
HDAC4-207ENST00000461113 TRAK1Q9UPV9 953 aa17.78■□□□□ 0.44
HDAC4-207ENST00000461113 CASZ1Q86V15 1759 aa17.77■□□□□ 0.44
HDAC4-207ENST00000461113 OVOS2A0A0G2JMS6 1433 aa17.77■□□□□ 0.44
HDAC4-207ENST00000461113 OVOS2A0A0J9YW53 1432 aa17.77■□□□□ 0.44
HDAC4-207ENST00000461113 OVOS2Q6IE36 1432 aa17.77■□□□□ 0.44
HDAC4-207ENST00000461113 DLC1Q96QB1 1528 aa17.77■□□□□ 0.43
HDAC4-207ENST00000461113 TULP4Q9NRJ4 1543 aa17.77■□□□□ 0.43
HDAC4-207ENST00000461113 STK32BQ9NY57 414 aa17.76■□□□□ 0.43
HDAC4-207ENST00000461113 SLC15A2Q16348 729 aa17.73■□□□□ 0.43
HDAC4-207ENST00000461113 SGIP1Q9BQI5 828 aa17.73■□□□□ 0.43
HDAC4-207ENST00000461113 MTFR1LQ9H019 292 aa17.73■□□□□ 0.43
HDAC4-207ENST00000461113 ROCK2O75116 1388 aaKnown RBP17.73■□□□□ 0.43
HDAC4-207ENST00000461113 GPR162Q16538 588 aa17.72■□□□□ 0.43
HDAC4-207ENST00000461113 NUDT16Q96DE0 195 aaKnown RBP17.72■□□□□ 0.43
HDAC4-207ENST00000461113 PHRF1Q9P1Y6 1649 aaKnown RBP17.72■□□□□ 0.43
HDAC4-207ENST00000461113 ATP7BP35670 1465 aa17.71■□□□□ 0.43
HDAC4-207ENST00000461113 DDB1Q16531 1140 aa17.71■□□□□ 0.43
HDAC4-207ENST00000461113 NBPF1Q3BBV0 1214 aa17.71■□□□□ 0.43
HDAC4-207ENST00000461113 ARXQ96QS3 562 aa17.71■□□□□ 0.43
HDAC4-207ENST00000461113 CEP350Q5VT06 3117 aa17.7■□□□□ 0.42
HDAC4-207ENST00000461113 CPDO75976 1380 aa17.7■□□□□ 0.42
HDAC4-207ENST00000461113 TXNRD1Q16881 649 aa17.7■□□□□ 0.42
HDAC4-207ENST00000461113 ABTB2Q8N961 1025 aa17.69■□□□□ 0.42
HDAC4-207ENST00000461113 CARD11Q9BXL7 1154 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms