RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.76□□□□□ -1.17
VPS13D-202ENST00000460333 CCDC146Q8IYE0 955 aa7.76□□□□□ -1.17
VPS13D-202ENST00000460333 MTHFSP49914 203 aa7.75□□□□□ -1.17
VPS13D-202ENST00000460333 CABP1Q9NZU7 370 aa7.75□□□□□ -1.17
VPS13D-202ENST00000460333 CENPQQ7L2Z9 268 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-202ENST00000460333 FTSJ3Q8IY81 847 aaKnown RBP7.75□□□□□ -1.17
VPS13D-202ENST00000460333 NGDNQ8NEJ9 315 aaKnown RBP7.75□□□□□ -1.17
VPS13D-202ENST00000460333 DIAPH1O60610 1272 aaKnown RBP7.75□□□□□ -1.17
VPS13D-202ENST00000460333 DMRT2Q9Y5R5 561 aa7.75□□□□□ -1.17
VPS13D-202ENST00000460333 IQGAP1P46940 1657 aa7.75□□□□□ -1.17
VPS13D-202ENST00000460333 APAF1O14727 1248 aa7.75□□□□□ -1.17
VPS13D-202ENST00000460333 ANKLE2Q86XL3 938 aa7.75□□□□□ -1.17
VPS13D-202ENST00000460333 SIRT1Q96EB6 747 aa7.75□□□□□ -1.17
VPS13D-202ENST00000460333 CCDC61Q9Y6R9 512 aa7.75□□□□□ -1.17
VPS13D-202ENST00000460333 WASLO00401 505 aaPredicted RBP7.74□□□□□ -1.17
VPS13D-202ENST00000460333 CSPP1Q1MSJ5 1256 aa7.74□□□□□ -1.17
VPS13D-202ENST00000460333 SYAP1Q96A49 352 aaPredicted RBP7.74□□□□□ -1.17
VPS13D-202ENST00000460333 GGNBP2Q9H3C7 697 aa7.74□□□□□ -1.17
VPS13D-202ENST00000460333 DCAF8L1A6NGE4 600 aa7.74□□□□□ -1.17
VPS13D-202ENST00000460333 RRP1P56182 461 aaKnown RBP7.74□□□□□ -1.17
VPS13D-202ENST00000460333 ABCC11Q96J66 1382 aa7.73□□□□□ -1.17
VPS13D-202ENST00000460333 NLRP1Q9C000 1473 aa7.73□□□□□ -1.17
VPS13D-202ENST00000460333 LMOD3Q0VAK6 560 aa7.73□□□□□ -1.17
VPS13D-202ENST00000460333 TMEM2Q9UHN6 1383 aa7.73□□□□□ -1.17
VPS13D-202ENST00000460333 WAPLQ7Z5K2 1190 aa7.73□□□□□ -1.17
VPS13D-202ENST00000460333 IL27Q8NEV9 243 aa7.73□□□□□ -1.17
VPS13D-202ENST00000460333 PMFBP1Q8TBY8 1022 aa7.73□□□□□ -1.17
VPS13D-202ENST00000460333 SLKQ9H2G2 1235 aaPredicted RBP7.73□□□□□ -1.17
VPS13D-202ENST00000460333 PREX1Q8TCU6 1659 aa7.73□□□□□ -1.17
VPS13D-202ENST00000460333 NPHP1O15259 732 aa7.73□□□□□ -1.17
VPS13D-202ENST00000460333 TNNT3P45378 269 aaPredicted RBP7.73□□□□□ -1.17
VPS13D-202ENST00000460333 CEBPAP49715 358 aaPredicted RBP7.73□□□□□ -1.17
VPS13D-202ENST00000460333 NFKBIBQ15653 356 aa7.73□□□□□ -1.17
VPS13D-202ENST00000460333 NUDT16Q96DE0 195 aaKnown RBP7.73□□□□□ -1.17
VPS13D-202ENST00000460333 POLR3AO14802 1390 aaPredicted RBP7.73□□□□□ -1.17
VPS13D-202ENST00000460333 GZF1Q9H116 711 aaPredicted RBP7.73□□□□□ -1.17
VPS13D-202ENST00000460333 CLTCQ00610 1675 aaKnown RBP7.72□□□□□ -1.17
VPS13D-202ENST00000460333 NEXMIFQ5QGS0 1516 aa7.72□□□□□ -1.17
VPS13D-202ENST00000460333 A2ML1A8K2U0 1454 aa7.72□□□□□ -1.17
VPS13D-202ENST00000460333 CARD14Q9BXL6 1004 aa7.72□□□□□ -1.17
VPS13D-202ENST00000460333 PPLO60437 1756 aa7.72□□□□□ -1.17
VPS13D-202ENST00000460333 SLC26A8Q96RN1 970 aa7.71□□□□□ -1.17
VPS13D-202ENST00000460333 PAK3O75914 559 aaPredicted RBP7.71□□□□□ -1.17
VPS13D-202ENST00000460333 RWDD1Q9H446 243 aaPredicted RBP7.71□□□□□ -1.17
VPS13D-202ENST00000460333 CSB-PGBD3P0DP91 1061 aa7.71□□□□□ -1.18
VPS13D-202ENST00000460333 ZRSR1Q15695 479 aaKnown RBP7.71□□□□□ -1.18
VPS13D-202ENST00000460333 ATF3P18847 181 aa7.71□□□□□ -1.18
VPS13D-202ENST00000460333 ISY1Q9ULR0 285 aaKnown RBP7.71□□□□□ -1.18
VPS13D-202ENST00000460333 TBX22Q9Y458 520 aa7.71□□□□□ -1.18
VPS13D-202ENST00000460333 MROH2AA6NES4 1674 aa7.71□□□□□ -1.18
VPS13D-202ENST00000460333 PIK3C2BO00750 1634 aa7.7□□□□□ -1.18
VPS13D-202ENST00000460333 MRE11P49959 708 aa7.7□□□□□ -1.18
VPS13D-202ENST00000460333 FRAT1Q92837 279 aaPredicted RBP7.7□□□□□ -1.18
VPS13D-202ENST00000460333 SPATA31D1Q6ZQQ2 1576 aa7.7□□□□□ -1.18
VPS13D-202ENST00000460333 AMOTL2Q9Y2J4 779 aa7.7□□□□□ -1.18
VPS13D-202ENST00000460333 WDR63Q8IWG1 891 aa7.7□□□□□ -1.18
VPS13D-202ENST00000460333 TCP11L2Q8N4U5 519 aa7.7□□□□□ -1.18
VPS13D-202ENST00000460333 PLEKHG1Q9ULL1 1385 aa7.69□□□□□ -1.18
VPS13D-202ENST00000460333 NUTM2FA1L443 756 aa7.69□□□□□ -1.18
VPS13D-202ENST00000460333 MSH5O43196 834 aa7.69□□□□□ -1.18
VPS13D-202ENST00000460333 QRICH2Q9H0J4 1663 aa7.69□□□□□ -1.18
VPS13D-202ENST00000460333 IPO8O15397 1037 aaKnown RBP7.69□□□□□ -1.18
VPS13D-202ENST00000460333 ALKQ9UM73 1620 aa7.69□□□□□ -1.18
VPS13D-202ENST00000460333 A0A1W2PP64 1363 aa7.69□□□□□ -1.18
VPS13D-202ENST00000460333 PHF14O94880 888 aa7.69□□□□□ -1.18
VPS13D-202ENST00000460333 BRPF3Q9ULD4 1205 aa7.69□□□□□ -1.18
VPS13D-202ENST00000460333 BLMP54132 1417 aaPredicted RBP7.69□□□□□ -1.18
VPS13D-202ENST00000460333 FAM135BQ49AJ0 1406 aa7.68□□□□□ -1.18
VPS13D-202ENST00000460333 AMPHP49418 695 aa7.68□□□□□ -1.18
VPS13D-202ENST00000460333 CDCA7LQ96GN5 454 aa7.68□□□□□ -1.18
VPS13D-202ENST00000460333 TMEM131LA2VDJ0 1609 aa7.68□□□□□ -1.18
VPS13D-202ENST00000460333 PPIP5K1Q6PFW1 1433 aa7.68□□□□□ -1.18
VPS13D-202ENST00000460333 PLCB2Q00722 1185 aa7.68□□□□□ -1.18
VPS13D-202ENST00000460333 RRP7AQ9Y3A4 280 aaKnown RBP7.68□□□□□ -1.18
VPS13D-202ENST00000460333 FCHSD2O94868 740 aa7.68□□□□□ -1.18
VPS13D-202ENST00000460333 ADGRB1O14514 1584 aa7.67□□□□□ -1.18
VPS13D-202ENST00000460333 FYB1O15117 783 aa7.67□□□□□ -1.18
VPS13D-202ENST00000460333 MCCP23508 829 aa7.67□□□□□ -1.18
VPS13D-202ENST00000460333 CHMP5Q9NZZ3 219 aa7.67□□□□□ -1.18
VPS13D-202ENST00000460333 CT47B1P0C2W7 299 aaPredicted RBP7.67□□□□□ -1.18
VPS13D-202ENST00000460333 SLFN5Q08AF3 891 aa7.67□□□□□ -1.18
VPS13D-202ENST00000460333 AAMPQ13685 434 aa7.67□□□□□ -1.18
VPS13D-202ENST00000460333 RTF1Q92541 710 aaKnown RBP7.67□□□□□ -1.18
VPS13D-202ENST00000460333 IFT172Q9UG01 1749 aa7.67□□□□□ -1.18
VPS13D-202ENST00000460333 DLC1Q96QB1 1528 aa7.67□□□□□ -1.18
VPS13D-202ENST00000460333 MYO3AQ8NEV4 1616 aa7.67□□□□□ -1.18
VPS13D-202ENST00000460333 RIPK4P57078 832 aa7.67□□□□□ -1.18
VPS13D-202ENST00000460333 SPRYD3Q8NCJ5 442 aa7.67□□□□□ -1.18
VPS13D-202ENST00000460333 SOX12O15370 315 aa7.66□□□□□ -1.18
VPS13D-202ENST00000460333 NCBP3Q53F19 620 aaKnown RBP7.66□□□□□ -1.18
VPS13D-202ENST00000460333 ATP7BP35670 1465 aa7.66□□□□□ -1.18
VPS13D-202ENST00000460333 EDC4Q6P2E9 1401 aaKnown RBP7.66□□□□□ -1.18
VPS13D-202ENST00000460333 PROSER2Q86WR7 435 aaPredicted RBP7.66□□□□□ -1.18
VPS13D-202ENST00000460333 TTC21AQ8NDW8 1320 aa7.65□□□□□ -1.18
VPS13D-202ENST00000460333 WWC1Q8IX03 1113 aa7.65□□□□□ -1.18
VPS13D-202ENST00000460333 EXOC6Q8TAG9 804 aa7.65□□□□□ -1.18
VPS13D-202ENST00000460333 PSME1Q06323 249 aa7.65□□□□□ -1.18
VPS13D-202ENST00000460333 CHMP4AQ9BY43 222 aa7.65□□□□□ -1.18
VPS13D-202ENST00000460333 METP08581 1390 aa7.65□□□□□ -1.19
VPS13D-202ENST00000460333 SF3B2Q13435 895 aaKnown RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms