RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 RIPK4P57078 832 aa17.72■□□□□ 0.43
CLK3-203ENST00000454830 PLEKHG1Q9ULL1 1385 aa17.72■□□□□ 0.43
CLK3-203ENST00000454830 PRR36Q9H6K5 1346 aa17.72■□□□□ 0.43
CLK3-203ENST00000454830 NKTRP30414 1462 aaKnown RBP17.71■□□□□ 0.43
CLK3-203ENST00000454830 DLC1Q96QB1 1528 aa17.71■□□□□ 0.43
CLK3-203ENST00000454830 PRKAR2BP31323 418 aa17.7■□□□□ 0.42
CLK3-203ENST00000454830 TSR2Q969E8 191 aaKnown RBP17.7■□□□□ 0.42
CLK3-203ENST00000454830 MYH16Q9H6N6 1097 aa17.7■□□□□ 0.42
CLK3-203ENST00000454830 ACEP12821 1306 aa17.7■□□□□ 0.42
CLK3-203ENST00000454830 ADAMTS13Q76LX8 1427 aa17.7■□□□□ 0.42
CLK3-203ENST00000454830 ZNF692Q9BU19 519 aaPredicted RBP17.7■□□□□ 0.42
CLK3-203ENST00000454830 PNNQ9H307 717 aaKnown RBP17.7■□□□□ 0.42
CLK3-203ENST00000454830 TMPOP42166 694 aaKnown RBP17.69■□□□□ 0.42
CLK3-203ENST00000454830 SIRT1Q96EB6 747 aa17.68■□□□□ 0.42
CLK3-203ENST00000454830 FAM135BQ49AJ0 1406 aa17.68■□□□□ 0.42
CLK3-203ENST00000454830 CLUAP1Q96AJ1 413 aa17.68■□□□□ 0.42
CLK3-203ENST00000454830 TBX22Q9Y458 520 aa17.68■□□□□ 0.42
CLK3-203ENST00000454830 UBR1Q8IWV7 1749 aa17.68■□□□□ 0.42
CLK3-203ENST00000454830 PAK3O75914 559 aaPredicted RBP17.67■□□□□ 0.42
CLK3-203ENST00000454830 WDR63Q8IWG1 891 aa17.67■□□□□ 0.42
CLK3-203ENST00000454830 NRXN3Q9Y4C0 1643 aa17.67■□□□□ 0.42
CLK3-203ENST00000454830 KCNA6P17658 529 aa17.67■□□□□ 0.42
CLK3-203ENST00000454830 ATP7BP35670 1465 aa17.67■□□□□ 0.42
CLK3-203ENST00000454830 NUTM2GQ5VZR2 741 aa17.66■□□□□ 0.42
CLK3-203ENST00000454830 ANKLE2Q86XL3 938 aa17.66■□□□□ 0.42
CLK3-203ENST00000454830 TRMT2AQ8IZ69 625 aaKnown RBP17.66■□□□□ 0.42
CLK3-203ENST00000454830 EDC4Q6P2E9 1401 aaKnown RBP17.66■□□□□ 0.42
CLK3-203ENST00000454830 USP32Q8NFA0 1604 aa17.66■□□□□ 0.42
CLK3-203ENST00000454830 PANK1Q8TE04 598 aa17.66■□□□□ 0.42
CLK3-203ENST00000454830 SKAP1Q86WV1 359 aa17.66■□□□□ 0.42
CLK3-203ENST00000454830 COG6Q9Y2V7 657 aa17.66■□□□□ 0.42
CLK3-203ENST00000454830 FER1L4A9Z1Z3 1794 aa17.64■□□□□ 0.42
CLK3-203ENST00000454830 TTC21BQ7Z4L5 1316 aa17.64■□□□□ 0.41
CLK3-203ENST00000454830 C3P01024 1663 aa17.63■□□□□ 0.41
CLK3-203ENST00000454830 ZBTB7CA1YPR0 619 aa17.63■□□□□ 0.41
CLK3-203ENST00000454830 FCHSD2O94868 740 aa17.63■□□□□ 0.41
CLK3-203ENST00000454830 EXOSC9Q06265 439 aaKnown RBP17.63■□□□□ 0.41
CLK3-203ENST00000454830 PTPRUQ92729 1446 aa17.62■□□□□ 0.41
CLK3-203ENST00000454830 ERICH6Q7L0X2 663 aa17.62■□□□□ 0.41
CLK3-203ENST00000454830 THUMPD2Q9BTF0 503 aaKnown RBP17.62■□□□□ 0.41
CLK3-203ENST00000454830 NPM2Q86SE8 214 aaKnown RBP17.62■□□□□ 0.41
CLK3-203ENST00000454830 TECPR2O15040 1411 aa17.62■□□□□ 0.41
CLK3-203ENST00000454830 SMC4Q9NTJ3 1288 aa17.61■□□□□ 0.41
CLK3-203ENST00000454830 SHPRHQ149N8 1683 aa17.61■□□□□ 0.41
CLK3-203ENST00000454830 SETD1AO15047 1707 aaKnown RBP17.61■□□□□ 0.41
CLK3-203ENST00000454830 PLEKHF1Q96S99 279 aa17.61■□□□□ 0.41
CLK3-203ENST00000454830 RARSP54136 660 aaKnown RBP17.61■□□□□ 0.41
CLK3-203ENST00000454830 CCDC27Q2M243 656 aa17.6■□□□□ 0.41
CLK3-203ENST00000454830 CPSF1Q10570 1443 aaKnown RBP17.6■□□□□ 0.41
CLK3-203ENST00000454830 FTSJ3Q8IY81 847 aaKnown RBP17.6■□□□□ 0.41
CLK3-203ENST00000454830 PHACTR3Q96KR7 559 aa17.6■□□□□ 0.41
CLK3-203ENST00000454830 RGS3P49796 1198 aa17.59■□□□□ 0.41
CLK3-203ENST00000454830 TRIM35Q9UPQ4 493 aa17.59■□□□□ 0.41
CLK3-203ENST00000454830 FANCIQ9NVI1 1328 aa17.59■□□□□ 0.41
CLK3-203ENST00000454830 ELL2O00472 640 aaPredicted RBP17.59■□□□□ 0.41
CLK3-203ENST00000454830 NLRP6P59044 892 aa17.59■□□□□ 0.41
CLK3-203ENST00000454830 MED14O60244 1454 aa17.58■□□□□ 0.41
CLK3-203ENST00000454830 AMPHP49418 695 aa17.58■□□□□ 0.41
CLK3-203ENST00000454830 SULT6B1Q6IMI4 303 aa17.58■□□□□ 0.4
CLK3-203ENST00000454830 LMOD2Q6P5Q4 547 aa17.58■□□□□ 0.4
CLK3-203ENST00000454830 RSPH6AQ9H0K4 717 aa17.58■□□□□ 0.4
CLK3-203ENST00000454830 TNNQ9UQP3 1299 aa17.58■□□□□ 0.4
CLK3-203ENST00000454830 CPS1P31327 1500 aa17.58■□□□□ 0.4
CLK3-203ENST00000454830 PLEKHG3A1L390 1219 aa17.57■□□□□ 0.4
CLK3-203ENST00000454830 IL13P35225 146 aa17.56■□□□□ 0.4
CLK3-203ENST00000454830 HSP90AB2PQ58FF8 381 aa17.56■□□□□ 0.4
CLK3-203ENST00000454830 LTV1Q96GA3 475 aaPredicted RBP17.56■□□□□ 0.4
CLK3-203ENST00000454830 PHF23Q9BUL5 403 aaPredicted RBP17.56■□□□□ 0.4
CLK3-203ENST00000454830 NFE2L2Q16236 605 aa17.55■□□□□ 0.4
CLK3-203ENST00000454830 TCERG1O14776 1098 aaKnown RBP17.55■□□□□ 0.4
CLK3-203ENST00000454830 AEBP1Q8IUX7 1158 aa17.55■□□□□ 0.4
CLK3-203ENST00000454830 IQSEC2Q5JU85 1478 aa17.55■□□□□ 0.4
CLK3-203ENST00000454830 KIF20BQ96Q89 1820 aa17.55■□□□□ 0.4
CLK3-203ENST00000454830 ABTB2Q8N961 1025 aa17.55■□□□□ 0.4
CLK3-203ENST00000454830 PNPLA6Q8IY17 1366 aa17.54■□□□□ 0.4
CLK3-203ENST00000454830 RIMS1Q86UR5 1692 aaKnown RBP17.54■□□□□ 0.4
CLK3-203ENST00000454830 CDC42BPGQ6DT37 1551 aa17.54■□□□□ 0.4
CLK3-203ENST00000454830 DCTN1Q14203 1278 aa17.54■□□□□ 0.4
CLK3-203ENST00000454830 PDE3AQ14432 1141 aa17.54■□□□□ 0.4
CLK3-203ENST00000454830 CENPQQ7L2Z9 268 aaPredicted RBP17.54■□□□□ 0.4
CLK3-203ENST00000454830 ESCO1Q5FWF5 840 aa17.53■□□□□ 0.4
CLK3-203ENST00000454830 COL3A1P02461 1466 aaPredicted RBP17.53■□□□□ 0.4
CLK3-203ENST00000454830 EIF4A2Q14240 407 aaKnown RBP17.53■□□□□ 0.4
CLK3-203ENST00000454830 ZKSCAN2Q63HK3 967 aa17.53■□□□□ 0.4
CLK3-203ENST00000454830 MAP2P11137 1827 aaKnown RBP17.52■□□□□ 0.4
CLK3-203ENST00000454830 FAM83GA6ND36 823 aa17.52■□□□□ 0.4
CLK3-203ENST00000454830 ANP32AP39687 249 aaKnown RBP17.52■□□□□ 0.4
CLK3-203ENST00000454830 ARHGAP23Q9P227 1491 aa17.52■□□□□ 0.4
CLK3-203ENST00000454830 SLIT1O75093 1534 aa17.52■□□□□ 0.4
CLK3-203ENST00000454830 USP6P35125 1406 aa17.52■□□□□ 0.39
CLK3-203ENST00000454830 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.51■□□□□ 0.39
CLK3-203ENST00000454830 SSH1Q8WYL5 1049 aa17.51■□□□□ 0.39
CLK3-203ENST00000454830 RLBP1P12271 317 aa17.51■□□□□ 0.39
CLK3-203ENST00000454830 ITPRIPQ8IWB1 547 aa17.51■□□□□ 0.39
CLK3-203ENST00000454830 XPCQ01831 940 aaPredicted RBP17.5■□□□□ 0.39
CLK3-203ENST00000454830 CALD1Q05682 793 aaKnown RBP17.5■□□□□ 0.39
CLK3-203ENST00000454830 DNAJC5Q9H3Z4 198 aa17.5■□□□□ 0.39
CLK3-203ENST00000454830 PSME1Q06323 249 aa17.5■□□□□ 0.39
CLK3-203ENST00000454830 KNDC1Q76NI1 1749 aa17.49■□□□□ 0.39
CLK3-203ENST00000454830 AATKQ6ZMQ8 1374 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms