RNA–Protein interactions for RNA: ENST00000454132.5

LMBR1-213, Transcript of limb development membrane protein 1, human

TSL 2

Gene LMBR1, Length 2,922 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMBR1-213	ENST00000454132	THUMPD2	Q9BTF0	503 aa	Known RBP	24.46	■■□□□ 1.51
LMBR1-213	ENST00000454132	CFAP65	Q6ZU64	1925 aa	Known RBP	24.46	■■□□□ 1.51
LMBR1-213	ENST00000454132	TBC1D9	Q6ZT07	1266 aa		24.46	■■□□□ 1.51
LMBR1-213	ENST00000454132	STK26	Q9P289	416 aa		24.46	■■□□□ 1.51
LMBR1-213	ENST00000454132	AK9	Q5TCS8	1911 aa		24.46	■■□□□ 1.51
LMBR1-213	ENST00000454132	SLC24A1	O60721	1099 aa		24.45	■■□□□ 1.51
LMBR1-213	ENST00000454132	CD109	Q6YHK3	1445 aa		24.45	■■□□□ 1.51
LMBR1-213	ENST00000454132	SNX21	Q969T3	373 aa		24.45	■■□□□ 1.51
LMBR1-213	ENST00000454132	CHAMP1	Q96JM3	812 aa		24.45	■■□□□ 1.5
LMBR1-213	ENST00000454132	ZBTB7C	A1YPR0	619 aa		24.45	■■□□□ 1.5
LMBR1-213	ENST00000454132		K7ELQ4	463 aa	Predicted RBP	24.44	■■□□□ 1.5
LMBR1-213	ENST00000454132	MCTP1	Q6DN14	999 aa		24.43	■■□□□ 1.5
LMBR1-213	ENST00000454132	NCOA3	Q9Y6Q9	1424 aa		24.43	■■□□□ 1.5
LMBR1-213	ENST00000454132	PLEKHF1	Q96S99	279 aa		24.42	■■□□□ 1.5
LMBR1-213	ENST00000454132	MAP3K4	Q9Y6R4	1608 aa		24.42	■■□□□ 1.5
LMBR1-213	ENST00000454132	PKP1	Q13835	747 aa		24.41	■■□□□ 1.5
LMBR1-213	ENST00000454132	CAVIN1	Q6NZI2	390 aa	Known RBP	24.41	■■□□□ 1.5
LMBR1-213	ENST00000454132	FOXD4L5	Q5VV16	416 aa	Predicted RBP	24.4	■■□□□ 1.5
LMBR1-213	ENST00000454132	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	24.4	■■□□□ 1.5
LMBR1-213	ENST00000454132	GGT6	Q6P531	493 aa		24.39	■■□□□ 1.5
LMBR1-213	ENST00000454132	APBB1	O00213	710 aa		24.39	■■□□□ 1.49
LMBR1-213	ENST00000454132	SRPK2	P78362	688 aa	Known RBP	24.39	■■□□□ 1.49
LMBR1-213	ENST00000454132	SKOR2	Q2VWA4	1001 aa	Predicted RBP	24.39	■■□□□ 1.49
LMBR1-213	ENST00000454132	BAG4	O95429	457 aa	Known RBP	24.38	■■□□□ 1.49
LMBR1-213	ENST00000454132	ATAD2	Q6PL18	1390 aa		24.38	■■□□□ 1.49
LMBR1-213	ENST00000454132	ABCC1	P33527	1531 aa		24.38	■■□□□ 1.49
LMBR1-213	ENST00000454132	IPO8	O15397	1037 aa	Known RBP	24.38	■■□□□ 1.49
LMBR1-213	ENST00000454132	CIZ1	Q9ULV3	898 aa	Predicted RBP	24.38	■■□□□ 1.49
LMBR1-213	ENST00000454132	BMP2KL	Q5H9B9	411 aa		24.37	■■□□□ 1.49
LMBR1-213	ENST00000454132	MSN	P26038	577 aa	Known RBP	24.37	■■□□□ 1.49
LMBR1-213	ENST00000454132	ANP32B	Q92688	251 aa	Known RBP	24.37	■■□□□ 1.49
LMBR1-213	ENST00000454132	TSPYL6	Q8N831	410 aa		24.36	■■□□□ 1.49
LMBR1-213	ENST00000454132	RBM27	Q9P2N5	1060 aa	Known RBP	24.36	■■□□□ 1.49
LMBR1-213	ENST00000454132	R3HCC1	Q9Y3T6	440 aa	Known RBP	24.36	■■□□□ 1.49
LMBR1-213	ENST00000454132	GOLGA6L22	H0YM25	854 aa		24.36	■■□□□ 1.49
LMBR1-213	ENST00000454132	ISY1	Q9ULR0	285 aa	Known RBP	24.35	■■□□□ 1.49
LMBR1-213	ENST00000454132	C14orf93	Q9H972	538 aa	Known RBP	24.35	■■□□□ 1.49
LMBR1-213	ENST00000454132	HMOX1	P09601	288 aa		24.34	■■□□□ 1.49
LMBR1-213	ENST00000454132	CCDC173	Q0VFZ6	552 aa		24.34	■■□□□ 1.49
LMBR1-213	ENST00000454132	SIRT2	Q8IXJ6	389 aa		24.34	■■□□□ 1.49
LMBR1-213	ENST00000454132	C16orf71	Q8IYS4	520 aa	Predicted RBP	24.34	■■□□□ 1.49
LMBR1-213	ENST00000454132	FAM13B	Q9NYF5	915 aa		24.34	■■□□□ 1.49
LMBR1-213	ENST00000454132	KIF16B	Q96L93	1317 aa		24.34	■■□□□ 1.49
LMBR1-213	ENST00000454132	ZSCAN30	Q86W11	494 aa		24.34	■■□□□ 1.49
LMBR1-213	ENST00000454132	PPIP5K1	Q6PFW1	1433 aa		24.33	■■□□□ 1.49
LMBR1-213	ENST00000454132	CT47B1	P0C2W7	299 aa	Predicted RBP	24.33	■■□□□ 1.49
LMBR1-213	ENST00000454132	XPC	Q01831	940 aa	Predicted RBP	24.33	■■□□□ 1.49
LMBR1-213	ENST00000454132	ZBTB7B	O15156	539 aa	Predicted RBP	24.33	■■□□□ 1.48
LMBR1-213	ENST00000454132	EVC2	Q86UK5	1308 aa		24.32	■■□□□ 1.48
LMBR1-213	ENST00000454132	ZFYVE16	Q7Z3T8	1539 aa		24.32	■■□□□ 1.48
LMBR1-213	ENST00000454132	MROH2A	A6NES4	1674 aa		24.31	■■□□□ 1.48
LMBR1-213	ENST00000454132	RBSN	Q9H1K0	784 aa		24.31	■■□□□ 1.48
LMBR1-213	ENST00000454132	TPM2	P07951	284 aa		24.3	■■□□□ 1.48
LMBR1-213	ENST00000454132	TET3	O43151	1660 aa		24.3	■■□□□ 1.48
LMBR1-213	ENST00000454132	SBNO2	Q9Y2G9	1366 aa		24.3	■■□□□ 1.48
LMBR1-213	ENST00000454132	GSPT1	P15170	499 aa	Known RBP	24.3	■■□□□ 1.48
LMBR1-213	ENST00000454132	MYOM2	P54296	1465 aa		24.3	■■□□□ 1.48
LMBR1-213	ENST00000454132	MINK1	Q8N4C8	1332 aa	Predicted RBP	24.29	■■□□□ 1.48
LMBR1-213	ENST00000454132	PRPF40A	O75400	957 aa	Known RBP	24.29	■■□□□ 1.48
LMBR1-213	ENST00000454132	ZGPAT	Q8N5A5	531 aa	Known RBP	24.29	■■□□□ 1.48
LMBR1-213	ENST00000454132	KIAA1210	Q9ULL0	1709 aa		24.29	■■□□□ 1.48
LMBR1-213	ENST00000454132	PRKAR2B	P31323	418 aa		24.29	■■□□□ 1.48
LMBR1-213	ENST00000454132	CALD1	Q05682	793 aa	Known RBP	24.29	■■□□□ 1.48
LMBR1-213	ENST00000454132	KLHL40	Q2TBA0	621 aa		24.29	■■□□□ 1.48
LMBR1-213	ENST00000454132	DIAPH1	O60610	1272 aa	Known RBP	24.28	■■□□□ 1.48
LMBR1-213	ENST00000454132	OTUD7A	Q8TE49	926 aa	Predicted RBP	24.28	■■□□□ 1.48
LMBR1-213	ENST00000454132	PRIM1	P49642	420 aa	Known RBP	24.28	■■□□□ 1.48
LMBR1-213	ENST00000454132	ZSCAN23	Q3MJ62	389 aa		24.28	■■□□□ 1.48
LMBR1-213	ENST00000454132	TPRN	Q4KMQ1	711 aa		24.28	■■□□□ 1.48
LMBR1-213	ENST00000454132	MPND	Q8N594	471 aa		24.28	■■□□□ 1.48
LMBR1-213	ENST00000454132	PPP1R9B	Q96SB3	815 aa		24.28	■■□□□ 1.48
LMBR1-213	ENST00000454132	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	24.28	■■□□□ 1.48	2e-6	■■■□□ 17.4
LMBR1-213	ENST00000454132		A0A1W2PP64	1363 aa		24.27	■■□□□ 1.48
LMBR1-213	ENST00000454132	FYB1	O15117	783 aa		24.27	■■□□□ 1.48
LMBR1-213	ENST00000454132	QRICH2	Q9H0J4	1663 aa		24.27	■■□□□ 1.48
LMBR1-213	ENST00000454132	PHACTR3	Q96KR7	559 aa		24.27	■■□□□ 1.48
LMBR1-213	ENST00000454132	ANKRD36B	Q8N2N9	1353 aa		24.26	■■□□□ 1.47
LMBR1-213	ENST00000454132	ABCC11	Q96J66	1382 aa		24.26	■■□□□ 1.47
LMBR1-213	ENST00000454132	SHROOM2	Q13796	1616 aa		24.26	■■□□□ 1.47
LMBR1-213	ENST00000454132	CDC45	O75419	566 aa		24.25	■■□□□ 1.47
LMBR1-213	ENST00000454132	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	24.25	■■□□□ 1.47
LMBR1-213	ENST00000454132	FOXD4L3	Q6VB84	417 aa	Predicted RBP	24.25	■■□□□ 1.47
LMBR1-213	ENST00000454132	KIF1B	O60333	1816 aa		24.25	■■□□□ 1.47
LMBR1-213	ENST00000454132	RNF214	Q8ND24	703 aa		24.25	■■□□□ 1.47
LMBR1-213	ENST00000454132	OFD1	O75665	1012 aa		24.24	■■□□□ 1.47
LMBR1-213	ENST00000454132	PDCL3	Q9H2J4	239 aa		24.24	■■□□□ 1.47
LMBR1-213	ENST00000454132	SMARCA5	O60264	1052 aa	Predicted RBP	24.24	■■□□□ 1.47
LMBR1-213	ENST00000454132	GCC1	Q96CN9	775 aa		24.24	■■□□□ 1.47
LMBR1-213	ENST00000454132	LMBRD1	Q9NUN5	540 aa		24.24	■■□□□ 1.47
LMBR1-213	ENST00000454132	NSFL1C	Q9UNZ2	370 aa	Known RBP	24.23	■■□□□ 1.47
LMBR1-213	ENST00000454132	VAMP4	O75379	141 aa		24.22	■■□□□ 1.47
LMBR1-213	ENST00000454132	MRPL50	Q8N5N7	158 aa	Known RBP	24.22	■■□□□ 1.47
LMBR1-213	ENST00000454132	NOL8	Q76FK4	1167 aa	Known RBP	24.21	■■□□□ 1.47
LMBR1-213	ENST00000454132	ATP7A	Q04656	1500 aa		24.21	■■□□□ 1.47
LMBR1-213	ENST00000454132	ADGRB2	O60241	1585 aa		24.21	■■□□□ 1.47
LMBR1-213	ENST00000454132	PLEKHM2	Q8IWE5	1019 aa		24.21	■■□□□ 1.47
LMBR1-213	ENST00000454132	SYCE3	A1L190	88 aa		24.2	■■□□□ 1.46
LMBR1-213	ENST00000454132	ALDH1L2	Q3SY69	923 aa		24.2	■■□□□ 1.46
LMBR1-213	ENST00000454132	GPT2	Q8TD30	523 aa		24.2	■■□□□ 1.46
LMBR1-213	ENST00000454132	PTMS	P20962	102 aa		24.2	■■□□□ 1.46

Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms