RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 PMFBP1Q8TBY8 1022 aa18.96■□□□□ 0.63
USP39-207ENST00000450066 COG3Q96JB2 828 aa18.96■□□□□ 0.63
USP39-207ENST00000450066 SENP3-EIF4A1A0A087X0R7 540 aa18.96■□□□□ 0.63
USP39-207ENST00000450066 NGDNQ8NEJ9 315 aaKnown RBP18.96■□□□□ 0.63
USP39-207ENST00000450066 SMG6Q86US8 1419 aaKnown RBP18.95■□□□□ 0.62
USP39-207ENST00000450066 PROSER2Q86WR7 435 aaPredicted RBP18.95■□□□□ 0.62
USP39-207ENST00000450066 AATKQ6ZMQ8 1374 aa18.94■□□□□ 0.62
USP39-207ENST00000450066 PNPLA6Q8IY17 1366 aa18.94■□□□□ 0.62
USP39-207ENST00000450066 TTC21AQ8NDW8 1320 aa18.94■□□□□ 0.62
USP39-207ENST00000450066 C14orf37Q86TY3 774 aa18.94■□□□□ 0.62
USP39-207ENST00000450066 PDE3BQ13370 1112 aa18.93■□□□□ 0.62
USP39-207ENST00000450066 ZRANB1Q9UGI0 708 aa18.93■□□□□ 0.62
USP39-207ENST00000450066 COL3A1P02461 1466 aaPredicted RBP18.93■□□□□ 0.62
USP39-207ENST00000450066 POLKQ9UBT6 870 aa18.93■□□□□ 0.62
USP39-207ENST00000450066 SALL2Q9Y467 1007 aaPredicted RBP18.91■□□□□ 0.62
USP39-207ENST00000450066 OVOS2A0A0J9YW53 1432 aa18.91■□□□□ 0.62
USP39-207ENST00000450066 OVOS2Q6IE36 1432 aa18.91■□□□□ 0.62
USP39-207ENST00000450066 NUDCQ9Y266 331 aa18.91■□□□□ 0.62
USP39-207ENST00000450066 NCOA3Q9Y6Q9 1424 aa18.9■□□□□ 0.62
USP39-207ENST00000450066 CCDC146Q8IYE0 955 aa18.9■□□□□ 0.62
USP39-207ENST00000450066 PHF8Q9UPP1 1060 aa18.9■□□□□ 0.62
USP39-207ENST00000450066 STRCQ7RTU9 1775 aa18.9■□□□□ 0.62
USP39-207ENST00000450066 NGEFQ8N5V2 710 aa18.89■□□□□ 0.61
USP39-207ENST00000450066 C19orf44Q9H6X5 657 aa18.89■□□□□ 0.61
USP39-207ENST00000450066 MAP2P11137 1827 aaKnown RBP18.88■□□□□ 0.61
USP39-207ENST00000450066 STRCP1A6NGW2 1772 aa18.88■□□□□ 0.61
USP39-207ENST00000450066 USP31Q70CQ4 1352 aa18.87■□□□□ 0.61
USP39-207ENST00000450066 DIAPH1O60610 1272 aaKnown RBP18.87■□□□□ 0.61
USP39-207ENST00000450066 FBLN1P23142 703 aa18.87■□□□□ 0.61
USP39-207ENST00000450066 CDK12Q9NYV4 1490 aaPredicted RBP18.87■□□□□ 0.61
USP39-207ENST00000450066 TMEM94Q12767 1356 aa18.87■□□□□ 0.61
USP39-207ENST00000450066 APAF1O14727 1248 aa18.86■□□□□ 0.61
USP39-207ENST00000450066 U2AF1L5P0DN76 240 aaPredicted RBP18.86■□□□□ 0.61
USP39-207ENST00000450066 U2AF1Q01081 240 aaKnown RBP eCLIP18.86■□□□□ 0.61
USP39-207ENST00000450066 RUNDC1Q96C34 613 aa18.86■□□□□ 0.61
USP39-207ENST00000450066 ESCO1Q5FWF5 840 aa18.86■□□□□ 0.61
USP39-207ENST00000450066 SUPT16HQ9Y5B9 1047 aaKnown RBP18.86■□□□□ 0.61
USP39-207ENST00000450066 ZNF521Q96K83 1311 aa18.86■□□□□ 0.61
USP39-207ENST00000450066 EMILIN1Q9Y6C2 1016 aa18.85■□□□□ 0.61
USP39-207ENST00000450066 PPM1GO15355 546 aaPredicted RBP18.85■□□□□ 0.61
USP39-207ENST00000450066 DCCP43146 1447 aa18.84■□□□□ 0.61
USP39-207ENST00000450066 PIK3C2AO00443 1686 aa18.84■□□□□ 0.61
USP39-207ENST00000450066 NEFLP07196 543 aa18.83■□□□□ 0.61
USP39-207ENST00000450066 U2SURPO15042 1029 aaKnown RBP18.83■□□□□ 0.6
USP39-207ENST00000450066 RRS1Q15050 365 aaKnown RBP18.82■□□□□ 0.6
USP39-207ENST00000450066 CDCA7LQ96GN5 454 aa18.81■□□□□ 0.6
USP39-207ENST00000450066 IQSEC2Q5JU85 1478 aa18.81■□□□□ 0.6
USP39-207ENST00000450066 C1orf167Q5SNV9 1468 aa18.81■□□□□ 0.6
USP39-207ENST00000450066 USP54Q70EL1 1684 aa18.81■□□□□ 0.6
USP39-207ENST00000450066 ATF3P18847 181 aa18.8■□□□□ 0.6
USP39-207ENST00000450066 PSME1Q06323 249 aa18.8■□□□□ 0.6
USP39-207ENST00000450066 NCBP3Q53F19 620 aaKnown RBP18.8■□□□□ 0.6
USP39-207ENST00000450066 ORAI2Q96SN7 254 aa18.8■□□□□ 0.6
USP39-207ENST00000450066 TCP11L2Q8N4U5 519 aa18.8■□□□□ 0.6
USP39-207ENST00000450066 PNNQ9H307 717 aaKnown RBP18.8■□□□□ 0.6
USP39-207ENST00000450066 LRRC7Q96NW7 1537 aa18.79■□□□□ 0.6
USP39-207ENST00000450066 NLRP6P59044 892 aa18.79■□□□□ 0.6
USP39-207ENST00000450066 GOLGA2Q08379 1002 aa18.79■□□□□ 0.6
USP39-207ENST00000450066 ABTB2Q8N961 1025 aa18.79■□□□□ 0.6
USP39-207ENST00000450066 PAK3O75914 559 aaPredicted RBP18.78■□□□□ 0.6
USP39-207ENST00000450066 IL13P35225 146 aa18.78■□□□□ 0.6
USP39-207ENST00000450066 PLEKHF1Q96S99 279 aa18.78■□□□□ 0.6
USP39-207ENST00000450066 FKBP8Q14318 412 aa18.78■□□□□ 0.6
USP39-207ENST00000450066 MST1RQ04912 1400 aa18.77■□□□□ 0.6
USP39-207ENST00000450066 KIF1AQ12756 1690 aa18.77■□□□□ 0.6
USP39-207ENST00000450066 FCHSD2O94868 740 aa18.77■□□□□ 0.6
USP39-207ENST00000450066 CADPS2Q86UW7 1296 aa18.77■□□□□ 0.6
USP39-207ENST00000450066 MSH6P52701 1360 aa18.76■□□□□ 0.59
USP39-207ENST00000450066 CCDC27Q2M243 656 aa18.76■□□□□ 0.59
USP39-207ENST00000450066 PHF23Q9BUL5 403 aaPredicted RBP18.76■□□□□ 0.59
USP39-207ENST00000450066 MARF1Q9Y4F3 1742 aaKnown RBP18.76■□□□□ 0.59
USP39-207ENST00000450066 FOXO3O43524 673 aa18.75■□□□□ 0.59
USP39-207ENST00000450066 WWC1Q8IX03 1113 aa18.75■□□□□ 0.59
USP39-207ENST00000450066 DMRT2Q9Y5R5 561 aa18.75■□□□□ 0.59
USP39-207ENST00000450066 MAP3K19Q56UN5 1328 aa18.74■□□□□ 0.59
USP39-207ENST00000450066 PEAK1Q9H792 1746 aa18.74■□□□□ 0.59
USP39-207ENST00000450066 RNF123Q5XPI4 1314 aa18.74■□□□□ 0.59
USP39-207ENST00000450066 ZNF335Q9H4Z2 1342 aaPredicted RBP18.74■□□□□ 0.59
USP39-207ENST00000450066 MAPK8IP3Q9UPT6 1336 aa18.74■□□□□ 0.59
USP39-207ENST00000450066 SLFN5Q08AF3 891 aa18.73■□□□□ 0.59
USP39-207ENST00000450066 XIRP1Q702N8 1843 aaKnown RBP18.73■□□□□ 0.59
USP39-207ENST00000450066 SOX12O15370 315 aa18.73■□□□□ 0.59
USP39-207ENST00000450066 DUSP27Q5VZP5 1158 aa18.73■□□□□ 0.59
USP39-207ENST00000450066 NUTM2GQ5VZR2 741 aa18.73■□□□□ 0.59
USP39-207ENST00000450066 TRMT2AQ8IZ69 625 aaKnown RBP18.73■□□□□ 0.59
USP39-207ENST00000450066 RSPH6AQ9H0K4 717 aa18.73■□□□□ 0.59
USP39-207ENST00000450066 RRP7AQ9Y3A4 280 aaKnown RBP18.73■□□□□ 0.59
USP39-207ENST00000450066 SBNO1A3KN83 1393 aa18.73■□□□□ 0.59
USP39-207ENST00000450066 KIF24Q5T7B8 1368 aa18.72■□□□□ 0.59
USP39-207ENST00000450066 NEUROD2Q15784 382 aa18.72■□□□□ 0.59
USP39-207ENST00000450066 FLT4P35916 1363 aa18.72■□□□□ 0.59
USP39-207ENST00000450066 E9PSI1 815 aa18.72■□□□□ 0.59
USP39-207ENST00000450066 EIF4A2Q14240 407 aaKnown RBP18.71■□□□□ 0.59
USP39-207ENST00000450066 HSP90AB2PQ58FF8 381 aa18.71■□□□□ 0.59
USP39-207ENST00000450066 RCAN3Q9UKA8 241 aa18.71■□□□□ 0.59
USP39-207ENST00000450066 KRT28Q7Z3Y7 464 aa18.7■□□□□ 0.58
USP39-207ENST00000450066 WDR63Q8IWG1 891 aa18.7■□□□□ 0.58
USP39-207ENST00000450066 PRKAR2BP31323 418 aa18.7■□□□□ 0.58
USP39-207ENST00000450066 TMPOP42166 694 aaKnown RBP18.7■□□□□ 0.58
USP39-207ENST00000450066 TRPM3Q9HCF6 1732 aaPredicted RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms