RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 EHBP1Q8NDI1 1231 aa7.54□□□□□ -1.2
VPS41-207ENST00000439468 BAP1Q92560 729 aa7.54□□□□□ -1.2
VPS41-207ENST00000439468 MRGPRX2Q96LB1 330 aa7.54□□□□□ -1.2
VPS41-207ENST00000439468 PCMTD1Q96MG8 357 aaPredicted RBP7.54□□□□□ -1.2
VPS41-207ENST00000439468 DGAT1O75907 488 aa7.52□□□□□ -1.21
VPS41-207ENST00000439468 AP1G2O75843 785 aa7.51□□□□□ -1.21
VPS41-207ENST00000439468 F12P00748 615 aaPredicted RBP7.51□□□□□ -1.21
VPS41-207ENST00000439468 SH3BP2P78314 561 aa7.51□□□□□ -1.21
VPS41-207ENST00000439468 CTDSPL2Q05D32 466 aa7.51□□□□□ -1.21
VPS41-207ENST00000439468 AGERQ15109 404 aa7.51□□□□□ -1.21
VPS41-207ENST00000439468 ZNF511Q8NB15 262 aa7.51□□□□□ -1.21
VPS41-207ENST00000439468 SNIP1Q8TAD8 396 aaKnown RBP7.51□□□□□ -1.21
VPS41-207ENST00000439468 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS41-207ENST00000439468 TOR4AQ9NXH8 423 aa7.5□□□□□ -1.21
VPS41-207ENST00000439468 ALDH1A1P00352 501 aa7.49□□□□□ -1.21
VPS41-207ENST00000439468 MYT1Q01538 1121 aa7.48□□□□□ -1.21
VPS41-207ENST00000439468 TMEM132AQ24JP5 1023 aa7.48□□□□□ -1.21
VPS41-207ENST00000439468 FBXO31Q5XUX0 539 aaPredicted RBP7.48□□□□□ -1.21
VPS41-207ENST00000439468 LRRN4Q8WUT4 740 aa7.48□□□□□ -1.21
VPS41-207ENST00000439468 J3QL48 77 aa7.47□□□□□ -1.21
VPS41-207ENST00000439468 LCE2BO14633 110 aa7.47□□□□□ -1.21
VPS41-207ENST00000439468 PPP2R2DQ66LE6 453 aa7.47□□□□□ -1.21
VPS41-207ENST00000439468 ARMC2Q8NEN0 867 aa7.47□□□□□ -1.21
VPS41-207ENST00000439468 GOPCQ9HD26 462 aa7.47□□□□□ -1.21
VPS41-207ENST00000439468 WASF2Q9Y6W5 498 aa7.47□□□□□ -1.21
VPS41-207ENST00000439468 ST8SIA5O15466 376 aa7.46□□□□□ -1.22
VPS41-207ENST00000439468 RFC5P40937 340 aa7.46□□□□□ -1.22
VPS41-207ENST00000439468 NBPF14Q5TI25 921 aa7.46□□□□□ -1.22
VPS41-207ENST00000439468 FOXJ1Q92949 421 aa7.46□□□□□ -1.22
VPS41-207ENST00000439468 TLL2Q9Y6L7 1015 aa7.46□□□□□ -1.22
VPS41-207ENST00000439468 USP17L8P0C7I0 530 aa7.45□□□□□ -1.22
VPS41-207ENST00000439468 SMPD1P17405 629 aa7.45□□□□□ -1.22
VPS41-207ENST00000439468 VARSP26640 1264 aaKnown RBP7.45□□□□□ -1.22
VPS41-207ENST00000439468 GTF3C3Q9Y5Q9 886 aa7.45□□□□□ -1.22
VPS41-207ENST00000439468 MAGEB6P1A0A0J9YX57 407 aa7.44□□□□□ -1.22
VPS41-207ENST00000439468 ARID5BQ14865 1188 aa7.44□□□□□ -1.22
VPS41-207ENST00000439468 NR6A1Q15406 480 aa7.44□□□□□ -1.22
VPS41-207ENST00000439468 BPHLQ86WA6 291 aaPredicted RBP7.44□□□□□ -1.22
VPS41-207ENST00000439468 FAM174AQ8TBP5 190 aa7.44□□□□□ -1.22
VPS41-207ENST00000439468 AXIN1O15169 862 aa7.43□□□□□ -1.22
VPS41-207ENST00000439468 CARD14Q9BXL6 1004 aa7.43□□□□□ -1.22
VPS41-207ENST00000439468 SIAH2O43255 324 aa7.42□□□□□ -1.22
VPS41-207ENST00000439468 HPS1Q92902 700 aa7.42□□□□□ -1.22
VPS41-207ENST00000439468 AAASQ9NRG9 546 aa7.42□□□□□ -1.22
VPS41-207ENST00000439468 AVPP01185 164 aa7.41□□□□□ -1.22
VPS41-207ENST00000439468 CTC1Q2NKJ3 1217 aa7.41□□□□□ -1.22
VPS41-207ENST00000439468 TMEM259Q4ZIN3 620 aa7.41□□□□□ -1.22
VPS41-207ENST00000439468 ZNF787Q6DD87 383 aa7.41□□□□□ -1.22
VPS41-207ENST00000439468 PNMA1Q8ND90 353 aa7.41□□□□□ -1.22
VPS41-207ENST00000439468 FKBPLQ9UIM3 349 aa7.41□□□□□ -1.22
VPS41-207ENST00000439468 HMX1Q9NP08 348 aaPredicted RBP7.4□□□□□ -1.22
VPS41-207ENST00000439468 C4orf48Q5BLP8 95 aa7.39□□□□□ -1.23
VPS41-207ENST00000439468 GPKOWQ92917 476 aaPredicted RBP eCLIP7.39□□□□□ -1.23
VPS41-207ENST00000439468 ARHGAP9Q9BRR9 750 aa7.39□□□□□ -1.23
VPS41-207ENST00000439468 NNTQ13423 1086 aa7.38□□□□□ -1.23
VPS41-207ENST00000439468 SH3BP5LQ7L8J4 393 aa7.38□□□□□ -1.23
VPS41-207ENST00000439468 CRIPAKQ8N1N5 446 aa7.38□□□□□ -1.23
VPS41-207ENST00000439468 EPS8L1Q8TE68 723 aa7.38□□□□□ -1.23
VPS41-207ENST00000439468 ADH1CP00326 375 aa7.37□□□□□ -1.23
VPS41-207ENST00000439468 ZBTB33Q86T24 672 aa7.37□□□□□ -1.23
VPS41-207ENST00000439468 DACH1Q9UI36 760 aa7.37□□□□□ -1.23
VPS41-207ENST00000439468 ZC3H4Q9UPT8 1303 aaKnown RBP7.36□□□□□ -1.23
VPS41-207ENST00000439468 CAPN5O15484 640 aaPredicted RBP7.36□□□□□ -1.23
VPS41-207ENST00000439468 SMCPP49901 116 aaPredicted RBP7.36□□□□□ -1.23
VPS41-207ENST00000439468 PTK2Q05397 1052 aa7.36□□□□□ -1.23
VPS41-207ENST00000439468 PDXDC2PQ6P474 469 aa7.36□□□□□ -1.23
VPS41-207ENST00000439468 VASH1Q7L8A9 365 aaPredicted RBP7.36□□□□□ -1.23
VPS41-207ENST00000439468 SH3RF1Q7Z6J0 888 aa7.36□□□□□ -1.23
VPS41-207ENST00000439468 TIMELESSQ9UNS1 1208 aa7.36□□□□□ -1.23
VPS41-207ENST00000439468 FSHRP23945 695 aa7.35□□□□□ -1.23
VPS41-207ENST00000439468 MPNDQ8N594 471 aa7.35□□□□□ -1.23
VPS41-207ENST00000439468 SLC10A4Q96EP9 437 aa7.35□□□□□ -1.23
VPS41-207ENST00000439468 WDR4P57081 412 aaKnown RBP7.34□□□□□ -1.23
VPS41-207ENST00000439468 ERFEQ4G0M1 354 aa7.34□□□□□ -1.23
VPS41-207ENST00000439468 C1QTNF2Q9BXJ5 285 aa7.34□□□□□ -1.23
VPS41-207ENST00000439468 ATP13A2Q9NQ11 1180 aa7.34□□□□□ -1.23
VPS41-207ENST00000439468 GMPR2Q9P2T1 348 aaKnown RBP7.34□□□□□ -1.23
VPS41-207ENST00000439468 POTECB2RU33 542 aa7.33□□□□□ -1.24
VPS41-207ENST00000439468 BMP1P13497 986 aa7.33□□□□□ -1.24
VPS41-207ENST00000439468 NR5A1Q13285 461 aa7.33□□□□□ -1.24
VPS41-207ENST00000439468 CDK15Q96Q40 435 aa7.33□□□□□ -1.24
VPS41-207ENST00000439468 C11orf95C9JLR9 678 aaPredicted RBP7.32□□□□□ -1.24
VPS41-207ENST00000439468 TRMT44Q8IYL2 757 aaKnown RBP7.32□□□□□ -1.24
VPS41-207ENST00000439468 BANK1Q8NDB2 785 aa7.32□□□□□ -1.24
VPS41-207ENST00000439468 TRIM34Q9BYJ4 488 aa7.32□□□□□ -1.24
VPS41-207ENST00000439468 APBB1O00213 710 aa7.31□□□□□ -1.24
VPS41-207ENST00000439468 ZIC2O95409 532 aaPredicted RBP7.31□□□□□ -1.24
VPS41-207ENST00000439468 NR3C2P08235 984 aa7.31□□□□□ -1.24
VPS41-207ENST00000439468 DZIP3Q86Y13 1208 aaKnown RBP7.31□□□□□ -1.24
VPS41-207ENST00000439468 ADAM32Q8TC27 787 aa7.31□□□□□ -1.24
VPS41-207ENST00000439468 MAP4K5Q9Y4K4 846 aa7.31□□□□□ -1.24
VPS41-207ENST00000439468 TIMP2P16035 220 aa7.3□□□□□ -1.24
VPS41-207ENST00000439468 GRM5P41594 1212 aa7.3□□□□□ -1.24
VPS41-207ENST00000439468 RAB15P59190 212 aa7.3□□□□□ -1.24
VPS41-207ENST00000439468 GJD4Q96KN9 370 aaPredicted RBP7.3□□□□□ -1.24
VPS41-207ENST00000439468 SENP2Q9HC62 589 aa7.3□□□□□ -1.24
VPS41-207ENST00000439468 SNRKQ9NRH2 765 aa7.3□□□□□ -1.24
VPS41-207ENST00000439468 GPSM3Q9Y4H4 160 aa7.3□□□□□ -1.24
VPS41-207ENST00000439468 CCDC116Q8IYX3 515 aa7.29□□□□□ -1.24
VPS41-207ENST00000439468 MTMR14Q8NCE2 650 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms