RNA–Protein interactions for RNA: ENST00000439247.2

PCNX3-202, Transcript of pecanex 3, humanhuman

TSL 1 (best)

Gene PCNX3, Length 3,104 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX3-202ENST00000439247 VSIG10Q8N0Z9 540 aa17.16■□□□□ 0.34
PCNX3-202ENST00000439247 C3P01024 1663 aa17.16■□□□□ 0.34
PCNX3-202ENST00000439247 CHMP5Q9NZZ3 219 aa17.15■□□□□ 0.34
PCNX3-202ENST00000439247 NRXN1Q9ULB1 1477 aa17.15■□□□□ 0.34
PCNX3-202ENST00000439247 TMEM132EQ6IEE7 984 aa17.14■□□□□ 0.34
PCNX3-202ENST00000439247 A2ML1A8K2U0 1454 aa17.14■□□□□ 0.33
PCNX3-202ENST00000439247 NINLQ9Y2I6 1382 aa17.14■□□□□ 0.33
PCNX3-202ENST00000439247 TSR2Q969E8 191 aaKnown RBP17.14■□□□□ 0.33
PCNX3-202ENST00000439247 MORC1Q86VD1 984 aa17.13■□□□□ 0.33
PCNX3-202ENST00000439247 GRPEL1Q9HAV7 217 aa17.13■□□□□ 0.33
PCNX3-202ENST00000439247 FOXD4L1Q9NU39 408 aa17.13■□□□□ 0.33
PCNX3-202ENST00000439247 RPGRIP1LQ68CZ1 1315 aa17.13■□□□□ 0.33
PCNX3-202ENST00000439247 RUNDC1Q96C34 613 aa17.13■□□□□ 0.33
PCNX3-202ENST00000439247 GAS2L3Q86XJ1 694 aa17.12■□□□□ 0.33
PCNX3-202ENST00000439247 STAC3Q96MF2 364 aa17.12■□□□□ 0.33
PCNX3-202ENST00000439247 SLC12A5Q9H2X9 1139 aa17.12■□□□□ 0.33
PCNX3-202ENST00000439247 KDM5AP29375 1690 aaKnown RBP17.12■□□□□ 0.33
PCNX3-202ENST00000439247 HSP90AA2PQ14568 343 aaPredicted RBP17.12■□□□□ 0.33
PCNX3-202ENST00000439247 MVPQ14764 893 aaKnown RBP17.12■□□□□ 0.33
PCNX3-202ENST00000439247 PKNOX2Q96KN3 472 aa17.12■□□□□ 0.33
PCNX3-202ENST00000439247 ZNF692Q9BU19 519 aaPredicted RBP17.12■□□□□ 0.33
PCNX3-202ENST00000439247 HSP90AA1P07900 732 aaKnown RBP17.11■□□□□ 0.33
PCNX3-202ENST00000439247 FTSJ3Q8IY81 847 aaKnown RBP17.11■□□□□ 0.33
PCNX3-202ENST00000439247 MYH16Q9H6N6 1097 aa17.11■□□□□ 0.33
PCNX3-202ENST00000439247 RIMS1Q86UR5 1692 aaKnown RBP17.11■□□□□ 0.33
PCNX3-202ENST00000439247 VGFO15240 615 aaPredicted RBP17.1■□□□□ 0.33
PCNX3-202ENST00000439247 MRE11P49959 708 aa17.1■□□□□ 0.33
PCNX3-202ENST00000439247 MTHFSP49914 203 aa17.1■□□□□ 0.33
PCNX3-202ENST00000439247 POLR3AO14802 1390 aaPredicted RBP17.09■□□□□ 0.33
PCNX3-202ENST00000439247 C14orf93Q9H972 538 aaKnown RBP17.09■□□□□ 0.33
PCNX3-202ENST00000439247 ZMYND15Q9H091 742 aa17.09■□□□□ 0.33
PCNX3-202ENST00000439247 ESPNB1AK53 854 aa17.08■□□□□ 0.33
PCNX3-202ENST00000439247 HSCBQ8IWL3 235 aa17.08■□□□□ 0.33
PCNX3-202ENST00000439247 NSD3Q9BZ95 1437 aa17.08■□□□□ 0.32
PCNX3-202ENST00000439247 DZIP1LQ8IYY4 767 aaKnown RBP17.08■□□□□ 0.32
PCNX3-202ENST00000439247 ITPRIPQ8IWB1 547 aa17.07■□□□□ 0.32
PCNX3-202ENST00000439247 RIMS2Q9UQ26 1411 aa17.07■□□□□ 0.32
PCNX3-202ENST00000439247 SHPRHQ149N8 1683 aa17.07■□□□□ 0.32
PCNX3-202ENST00000439247 TNPO1Q92973 898 aaKnown RBP17.07■□□□□ 0.32
PCNX3-202ENST00000439247 NGEFQ8N5V2 710 aa17.07■□□□□ 0.32
PCNX3-202ENST00000439247 ADAMTSL3P82987 1691 aa17.06■□□□□ 0.32
PCNX3-202ENST00000439247 ZKSCAN2Q63HK3 967 aa17.06■□□□□ 0.32
PCNX3-202ENST00000439247 TRAK1Q9UPV9 953 aa17.06■□□□□ 0.32
PCNX3-202ENST00000439247 TRIM27P14373 513 aa17.06■□□□□ 0.32
PCNX3-202ENST00000439247 SMC4Q9NTJ3 1288 aa17.05■□□□□ 0.32
PCNX3-202ENST00000439247 KIAA1210Q9ULL0 1709 aa17.05■□□□□ 0.32
PCNX3-202ENST00000439247 WDR63Q8IWG1 891 aa17.05■□□□□ 0.32
PCNX3-202ENST00000439247 ADGRB1O14514 1584 aa17.05■□□□□ 0.32
PCNX3-202ENST00000439247 CD2BP2O95400 341 aaKnown RBP17.05■□□□□ 0.32
PCNX3-202ENST00000439247 U2AF1L5P0DN76 240 aaPredicted RBP17.05■□□□□ 0.32
PCNX3-202ENST00000439247 U2AF1Q01081 240 aaKnown RBP eCLIP17.05■□□□□ 0.32
PCNX3-202ENST00000439247 EXOSC9Q06265 439 aaKnown RBP17.05■□□□□ 0.32
PCNX3-202ENST00000439247 UBR1Q8IWV7 1749 aa17.04■□□□□ 0.32
PCNX3-202ENST00000439247 ZFYVE9O95405 1425 aa17.04■□□□□ 0.32
PCNX3-202ENST00000439247 IQSEC2Q5JU85 1478 aa17.04■□□□□ 0.32
PCNX3-202ENST00000439247 LNPKQ9C0E8 428 aa17.04■□□□□ 0.32
PCNX3-202ENST00000439247 SSH1Q8WYL5 1049 aa17.03■□□□□ 0.32
PCNX3-202ENST00000439247 DDX11L8A8MPP1 907 aa17.03■□□□□ 0.32
PCNX3-202ENST00000439247 GLIPR1L2Q4G1C9 344 aa17.03■□□□□ 0.32
PCNX3-202ENST00000439247 STK26Q9P289 416 aa17.03■□□□□ 0.32
PCNX3-202ENST00000439247 LTKP29376 864 aa17.02■□□□□ 0.32
PCNX3-202ENST00000439247 DDIT3P35638 169 aa17.02■□□□□ 0.31
PCNX3-202ENST00000439247 RBM42Q9BTD8 480 aaKnown RBP17.02■□□□□ 0.31
PCNX3-202ENST00000439247 TRIM44Q96DX7 344 aaPredicted RBP17.01■□□□□ 0.31
PCNX3-202ENST00000439247 TMEM2Q9UHN6 1383 aa17.01■□□□□ 0.31
PCNX3-202ENST00000439247 AAMPQ13685 434 aa17.01■□□□□ 0.31
PCNX3-202ENST00000439247 TMEM57Q8N5G2 664 aa17.01■□□□□ 0.31
PCNX3-202ENST00000439247 NOB1Q9ULX3 412 aaKnown RBP17.01■□□□□ 0.31
PCNX3-202ENST00000439247 HSP90AB1P08238 724 aaKnown RBP17.01■□□□□ 0.31
PCNX3-202ENST00000439247 RRP9O43818 475 aaKnown RBP17■□□□□ 0.31
PCNX3-202ENST00000439247 PTPRMP28827 1452 aa17■□□□□ 0.31
PCNX3-202ENST00000439247 SETBP1Q9Y6X0 1596 aa16.99■□□□□ 0.31
PCNX3-202ENST00000439247 SAFB2Q14151 953 aaKnown RBP eCLIP16.99■□□□□ 0.31
PCNX3-202ENST00000439247 MYO3AQ8NEV4 1616 aa16.99■□□□□ 0.31
PCNX3-202ENST00000439247 ALKQ9UM73 1620 aa16.99■□□□□ 0.31
PCNX3-202ENST00000439247 U2SURPO15042 1029 aaKnown RBP16.97■□□□□ 0.31
PCNX3-202ENST00000439247 HDAC1Q13547 482 aaPredicted RBP16.97■□□□□ 0.31
PCNX3-202ENST00000439247 SMC5Q8IY18 1101 aa16.97■□□□□ 0.31
PCNX3-202ENST00000439247 KIF2CQ99661 725 aa16.97■□□□□ 0.31
PCNX3-202ENST00000439247 ATF7IPQ6VMQ6 1270 aa16.96■□□□□ 0.31
PCNX3-202ENST00000439247 NCOA3Q9Y6Q9 1424 aa16.96■□□□□ 0.31
PCNX3-202ENST00000439247 NRXN3Q9Y4C0 1643 aa16.96■□□□□ 0.31
PCNX3-202ENST00000439247 SSFA2P28290 1259 aa16.96■□□□□ 0.31
PCNX3-202ENST00000439247 TXNDC2Q86VQ3 553 aa16.96■□□□□ 0.31
PCNX3-202ENST00000439247 C1orf115Q9H7X2 142 aa16.96■□□□□ 0.31
PCNX3-202ENST00000439247 RBM25P49756 843 aaKnown RBP16.95■□□□□ 0.3
PCNX3-202ENST00000439247 CCDC27Q2M243 656 aa16.95■□□□□ 0.3
PCNX3-202ENST00000439247 RAB3GAP1Q15042 981 aa16.95■□□□□ 0.3
PCNX3-202ENST00000439247 CFAP53Q96M91 514 aa16.95■□□□□ 0.3
PCNX3-202ENST00000439247 DDX19BQ9UMR2 479 aa16.95■□□□□ 0.3
PCNX3-202ENST00000439247 METP08581 1390 aa16.95■□□□□ 0.3
PCNX3-202ENST00000439247 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.94■□□□□ 0.3
PCNX3-202ENST00000439247 ZBTB40Q9NUA8 1239 aa16.94■□□□□ 0.3
PCNX3-202ENST00000439247 TRIM35Q9UPQ4 493 aa16.94■□□□□ 0.3
PCNX3-202ENST00000439247 AK9Q5TCS8 1911 aa16.93■□□□□ 0.3
PCNX3-202ENST00000439247 SLC26A8Q96RN1 970 aa16.93■□□□□ 0.3
PCNX3-202ENST00000439247 CEP170BQ9Y4F5 1589 aaPredicted RBP16.93■□□□□ 0.3
PCNX3-202ENST00000439247 GAS2L2Q8NHY3 880 aa16.93■□□□□ 0.3
PCNX3-202ENST00000439247 YTHDC2Q9H6S0 1430 aaKnown RBP16.93■□□□□ 0.3
PCNX3-202ENST00000439247 NUCB1Q02818 461 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms