RNA–Protein interactions for RNA: ENST00000433355.6

SHPRH-205, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

TSL 1 (best)

Gene SHPRH, Length 11,660 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-205ENST00000433355 NCOA3Q9Y6Q9 1424 aa4.71□□□□□ -1.65
SHPRH-205ENST00000433355 NOL10Q9BSC4 688 aaKnown RBP4.71□□□□□ -1.66
SHPRH-205ENST00000433355 NOP58Q9Y2X3 529 aaKnown RBP4.71□□□□□ -1.66
SHPRH-205ENST00000433355 ABCA6Q8N139 1617 aa4.71□□□□□ -1.66
SHPRH-205ENST00000433355 BRPF1P55201 1214 aaPredicted RBP4.71□□□□□ -1.66
SHPRH-205ENST00000433355 ZKSCAN2Q63HK3 967 aa4.71□□□□□ -1.66
SHPRH-205ENST00000433355 ARHGEF28Q8N1W1 1705 aaKnown RBP4.71□□□□□ -1.66
SHPRH-205ENST00000433355 MSH6P52701 1360 aa4.71□□□□□ -1.66
SHPRH-205ENST00000433355 CPS1P31327 1500 aa4.71□□□□□ -1.66
SHPRH-205ENST00000433355 HSP90AA1P07900 732 aaKnown RBP4.71□□□□□ -1.66
SHPRH-205ENST00000433355 FAM161AQ3B820 660 aa4.71□□□□□ -1.66
SHPRH-205ENST00000433355 IPO9Q96P70 1041 aaKnown RBP4.71□□□□□ -1.66
SHPRH-205ENST00000433355 THEMISQ8N1K5 641 aaPredicted RBP4.7□□□□□ -1.66
SHPRH-205ENST00000433355 KIAA0232Q92628 1395 aa4.7□□□□□ -1.66
SHPRH-205ENST00000433355 PLEKHG1Q9ULL1 1385 aa4.7□□□□□ -1.66
SHPRH-205ENST00000433355 GOLGA6L6A8MZA4 724 aa4.7□□□□□ -1.66
SHPRH-205ENST00000433355 MTERF4Q7Z6M4 381 aaKnown RBP4.7□□□□□ -1.66
SHPRH-205ENST00000433355 ADGRB1O14514 1584 aa4.7□□□□□ -1.66
SHPRH-205ENST00000433355 SRCIN1Q9C0H9 1055 aa4.69□□□□□ -1.66
SHPRH-205ENST00000433355 STK31Q9BXU1 1019 aa4.69□□□□□ -1.66
SHPRH-205ENST00000433355 DCCP43146 1447 aa4.69□□□□□ -1.66
SHPRH-205ENST00000433355 YTHDC2Q9H6S0 1430 aaKnown RBP4.69□□□□□ -1.66
SHPRH-205ENST00000433355 FAM9BQ8IZU0 186 aa4.69□□□□□ -1.66
SHPRH-205ENST00000433355 GCC1Q96CN9 775 aa4.69□□□□□ -1.66
SHPRH-205ENST00000433355 SSH2Q76I76 1423 aa4.69□□□□□ -1.66
SHPRH-205ENST00000433355 CPSF1Q10570 1443 aaKnown RBP4.69□□□□□ -1.66
SHPRH-205ENST00000433355 HIP1O00291 1037 aa4.69□□□□□ -1.66
SHPRH-205ENST00000433355 AOX1Q06278 1338 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.68□□□□□ -1.661e-6■■□□□ 11.9
SHPRH-205ENST00000433355 FAM208AQ9UK61 1670 aaKnown RBP4.68□□□□□ -1.66
SHPRH-205ENST00000433355 GAS2L2Q8NHY3 880 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 COG3Q96JB2 828 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 KCNH8Q96L42 1107 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 DIP2BQ9P265 1576 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 HSP90AB1P08238 724 aaKnown RBP4.68□□□□□ -1.66
SHPRH-205ENST00000433355 PDCP20941 246 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 HSCBQ8IWL3 235 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 FAM184AQ8NB25 1140 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 RGS22Q8NE09 1264 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 KIF1AQ12756 1690 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 CLUAP1Q96AJ1 413 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 TESK2Q96S53 571 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 IFT57Q9NWB7 429 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 TNRQ92752 1358 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 TPM3P06753 285 aa4.68□□□□□ -1.66
SHPRH-205ENST00000433355 NCLP19338 710 aaKnown RBP4.68□□□□□ -1.66
SHPRH-205ENST00000433355 HNRNPMP52272 730 aaKnown RBP eCLIP4.67□□□□□ -1.66
SHPRH-205ENST00000433355 MYOM1P52179 1685 aa4.67□□□□□ -1.66
SHPRH-205ENST00000433355 ST18O60284 1047 aa4.67□□□□□ -1.66
SHPRH-205ENST00000433355 GNAI3P08754 354 aa4.67□□□□□ -1.66
SHPRH-205ENST00000433355 FLT4P35916 1363 aa4.67□□□□□ -1.66
SHPRH-205ENST00000433355 TULP4Q9NRJ4 1543 aa4.67□□□□□ -1.66
SHPRH-205ENST00000433355 TRHP20396 242 aaPredicted RBP4.67□□□□□ -1.66
SHPRH-205ENST00000433355 POLR3GLQ9BT43 218 aa4.67□□□□□ -1.66
SHPRH-205ENST00000433355 C11orf95C9JLR9 678 aaPredicted RBP4.67□□□□□ -1.66
SHPRH-205ENST00000433355 CARMIL3Q8ND23 1372 aa4.67□□□□□ -1.66
SHPRH-205ENST00000433355 PXDNLA1KZ92 1463 aa4.67□□□□□ -1.66
SHPRH-205ENST00000433355 PTPRCP08575 1304 aa4.66□□□□□ -1.66
SHPRH-205ENST00000433355 RABEP1Q15276 862 aa4.66□□□□□ -1.66
SHPRH-205ENST00000433355 ERC1Q8IUD2 1116 aa4.66□□□□□ -1.66
SHPRH-205ENST00000433355 KCNH5Q8NCM2 988 aa4.66□□□□□ -1.66
SHPRH-205ENST00000433355 GTPBP4Q9BZE4 634 aaKnown RBP4.66□□□□□ -1.66
SHPRH-205ENST00000433355 NSD3Q9BZ95 1437 aa4.66□□□□□ -1.66
SHPRH-205ENST00000433355 MBD3O95983 291 aa4.66□□□□□ -1.66
SHPRH-205ENST00000433355 PTPRUQ92729 1446 aa4.66□□□□□ -1.66
SHPRH-205ENST00000433355 TMEM131LA2VDJ0 1609 aa4.66□□□□□ -1.66
SHPRH-205ENST00000433355 CCT4P50991 539 aaKnown RBP4.66□□□□□ -1.66
SHPRH-205ENST00000433355 MFAP1P55081 439 aaKnown RBP4.66□□□□□ -1.66
SHPRH-205ENST00000433355 CFAP65Q6ZU64 1925 aaKnown RBP4.66□□□□□ -1.66
SHPRH-205ENST00000433355 DHX37Q8IY37 1157 aaKnown RBP4.66□□□□□ -1.66
SHPRH-205ENST00000433355 DIAPH1O60610 1272 aaKnown RBP4.66□□□□□ -1.66
SHPRH-205ENST00000433355 USP54Q70EL1 1684 aa4.66□□□□□ -1.66
SHPRH-205ENST00000433355 PANK3Q9H999 370 aa4.66□□□□□ -1.66
SHPRH-205ENST00000433355 CCDC61Q9Y6R9 512 aa4.66□□□□□ -1.66
SHPRH-205ENST00000433355 SRPK2P78362 688 aaKnown RBP4.65□□□□□ -1.66
SHPRH-205ENST00000433355 HDAC1Q13547 482 aaPredicted RBP4.65□□□□□ -1.66
SHPRH-205ENST00000433355 RUFY2Q8WXA3 655 aa4.65□□□□□ -1.66
SHPRH-205ENST00000433355 PPP2R1AP30153 589 aa4.65□□□□□ -1.66
SHPRH-205ENST00000433355 DZIP1LQ8IYY4 767 aaKnown RBP4.65□□□□□ -1.66
SHPRH-205ENST00000433355 ZNF644Q9H582 1327 aaPredicted RBP4.65□□□□□ -1.66
SHPRH-205ENST00000433355 SLIT1O75093 1534 aa4.65□□□□□ -1.66
SHPRH-205ENST00000433355 HOXA7P31268 230 aaPredicted RBP4.65□□□□□ -1.66
SHPRH-205ENST00000433355 ZNF142P52746 1687 aaPredicted RBP4.65□□□□□ -1.66
SHPRH-205ENST00000433355 AMOTQ4VCS5 1084 aa4.65□□□□□ -1.67
SHPRH-205ENST00000433355 RTF1Q92541 710 aaKnown RBP4.65□□□□□ -1.67
SHPRH-205ENST00000433355 ERBB4Q15303 1308 aa4.65□□□□□ -1.67
SHPRH-205ENST00000433355 TUBB4AP04350 444 aa4.65□□□□□ -1.67
SHPRH-205ENST00000433355 CAVIN1Q6NZI2 390 aaKnown RBP4.65□□□□□ -1.67
SHPRH-205ENST00000433355 TMEM2Q9UHN6 1383 aa4.65□□□□□ -1.67
SHPRH-205ENST00000433355 NPM2Q86SE8 214 aaKnown RBP4.65□□□□□ -1.67
SHPRH-205ENST00000433355 NUCB2P80303 420 aa4.64□□□□□ -1.67
SHPRH-205ENST00000433355 MON2Q7Z3U7 1717 aa4.64□□□□□ -1.67
SHPRH-205ENST00000433355 HS1BP3Q53T59 392 aa4.64□□□□□ -1.67
SHPRH-205ENST00000433355 SBNO1A3KN83 1393 aa4.64□□□□□ -1.67
SHPRH-205ENST00000433355 MCM5P33992 734 aa4.64□□□□□ -1.67
SHPRH-205ENST00000433355 RPAP2Q8IXW5 612 aaPredicted RBP4.64□□□□□ -1.67
SHPRH-205ENST00000433355 ERC2O15083 957 aa4.64□□□□□ -1.67
SHPRH-205ENST00000433355 U2AF1L5P0DN76 240 aaPredicted RBP4.64□□□□□ -1.67
SHPRH-205ENST00000433355 ANAPC15P60006 121 aa4.64□□□□□ -1.67
SHPRH-205ENST00000433355 U2AF1Q01081 240 aaKnown RBP eCLIP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms