RNA–Protein interactions for RNA: ENST00000432057.2

VRK2-205, Transcript of vaccinia related kinase 2, humanhuman

TSL 1 (best)

Gene VRK2, Length 1,870 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2-205ENST00000432057 RUNDC1Q96C34 613 aa25.78■■□□□ 1.72
VRK2-205ENST00000432057 B4GALNT3Q6L9W6 998 aa25.77■■□□□ 1.72
VRK2-205ENST00000432057 SETD1BQ9UPS6 1966 aaKnown RBP25.77■■□□□ 1.72
VRK2-205ENST00000432057 SLFN5Q08AF3 891 aa25.76■■□□□ 1.71
VRK2-205ENST00000432057 NGEFQ8N5V2 710 aa25.76■■□□□ 1.71
VRK2-205ENST00000432057 NKTRP30414 1462 aaKnown RBP25.76■■□□□ 1.71
VRK2-205ENST00000432057 CHD2O14647 1828 aaKnown RBP25.74■■□□□ 1.71
VRK2-205ENST00000432057 U2AF1L5P0DN76 240 aaPredicted RBP25.73■■□□□ 1.71
VRK2-205ENST00000432057 U2AF1Q01081 240 aaKnown RBP eCLIP25.73■■□□□ 1.71
VRK2-205ENST00000432057 NME9Q86XW9 330 aa25.73■■□□□ 1.71
VRK2-205ENST00000432057 SPINK5Q9NQ38 1064 aaPredicted RBP25.73■■□□□ 1.71
VRK2-205ENST00000432057 TSHZ2Q9NRE2 1034 aa25.73■■□□□ 1.71
VRK2-205ENST00000432057 DMRT2Q9Y5R5 561 aa25.72■■□□□ 1.71
VRK2-205ENST00000432057 TRMT2AQ8IZ69 625 aaKnown RBP25.72■■□□□ 1.71
VRK2-205ENST00000432057 TCP11L2Q8N4U5 519 aa25.72■■□□□ 1.71
VRK2-205ENST00000432057 RRP7AQ9Y3A4 280 aaKnown RBP25.71■■□□□ 1.71
VRK2-205ENST00000432057 NUTM2FA1L443 756 aa25.7■■□□□ 1.71
VRK2-205ENST00000432057 PNPLA6Q8IY17 1366 aa25.7■■□□□ 1.7
VRK2-205ENST00000432057 ZRANB1Q9UGI0 708 aa25.7■■□□□ 1.7
VRK2-205ENST00000432057 U2SURPO15042 1029 aaKnown RBP25.69■■□□□ 1.7
VRK2-205ENST00000432057 WWC1Q8IX03 1113 aa25.69■■□□□ 1.7
VRK2-205ENST00000432057 FBLN1P23142 703 aa25.68■■□□□ 1.7
VRK2-205ENST00000432057 NEUROD2Q15784 382 aa25.68■■□□□ 1.7
VRK2-205ENST00000432057 FMN2Q9NZ56 1722 aa25.68■■□□□ 1.7
VRK2-205ENST00000432057 E9PSI1 815 aa25.68■■□□□ 1.7
VRK2-205ENST00000432057 PIK3R4Q99570 1358 aa25.67■■□□□ 1.7
VRK2-205ENST00000432057 NALCNQ8IZF0 1738 aa25.67■■□□□ 1.7
VRK2-205ENST00000432057 ZNF692Q9BU19 519 aaPredicted RBP25.66■■□□□ 1.7
VRK2-205ENST00000432057 POLKQ9UBT6 870 aa25.66■■□□□ 1.7
VRK2-205ENST00000432057 ACEP12821 1306 aa25.66■■□□□ 1.7
VRK2-205ENST00000432057 PLIN1O60240 522 aa25.66■■□□□ 1.7
VRK2-205ENST00000432057 DIAPH1O60610 1272 aaKnown RBP25.66■■□□□ 1.7
VRK2-205ENST00000432057 LRRC7Q96NW7 1537 aa25.65■■□□□ 1.7
VRK2-205ENST00000432057 PLEKHG3A1L390 1219 aa25.64■■□□□ 1.7
VRK2-205ENST00000432057 KCNA6P17658 529 aa25.64■■□□□ 1.7
VRK2-205ENST00000432057 EXOC6Q8TAG9 804 aa25.64■■□□□ 1.7
VRK2-205ENST00000432057 CDK12Q9NYV4 1490 aaPredicted RBP25.64■■□□□ 1.7
VRK2-205ENST00000432057 USP6P35125 1406 aa25.64■■□□□ 1.69
VRK2-205ENST00000432057 ANKLE2Q86XL3 938 aa25.64■■□□□ 1.69
VRK2-205ENST00000432057 PHF23Q9BUL5 403 aaPredicted RBP25.64■■□□□ 1.69
VRK2-205ENST00000432057 COG3Q96JB2 828 aa25.63■■□□□ 1.69
VRK2-205ENST00000432057 CCDC136Q96JN2 1154 aa25.62■■□□□ 1.69
VRK2-205ENST00000432057 AATKQ6ZMQ8 1374 aa25.62■■□□□ 1.69
VRK2-205ENST00000432057 PPM1GO15355 546 aaPredicted RBP25.62■■□□□ 1.69
VRK2-205ENST00000432057 PLEKHF1Q96S99 279 aa25.61■■□□□ 1.69
VRK2-205ENST00000432057 EMILIN1Q9Y6C2 1016 aa25.61■■□□□ 1.69
VRK2-205ENST00000432057 TTC21BQ7Z4L5 1316 aa25.6■■□□□ 1.69
VRK2-205ENST00000432057 CCDC27Q2M243 656 aa25.6■■□□□ 1.69
VRK2-205ENST00000432057 OVOS2A0A0J9YW53 1432 aa25.58■■□□□ 1.69
VRK2-205ENST00000432057 OVOS2Q6IE36 1432 aa25.58■■□□□ 1.69
VRK2-205ENST00000432057 MAPK8IP3Q9UPT6 1336 aa25.57■■□□□ 1.68
VRK2-205ENST00000432057 NCBP3Q53F19 620 aaKnown RBP25.57■■□□□ 1.68
VRK2-205ENST00000432057 WDR63Q8IWG1 891 aa25.57■■□□□ 1.68
VRK2-205ENST00000432057 SSH2Q76I76 1423 aa25.56■■□□□ 1.68
VRK2-205ENST00000432057 PMFBP1Q8TBY8 1022 aa25.55■■□□□ 1.68
VRK2-205ENST00000432057 ANKARQ7Z5J8 1434 aa25.55■■□□□ 1.68
VRK2-205ENST00000432057 PIK3C2AO00443 1686 aa25.55■■□□□ 1.68
VRK2-205ENST00000432057 PEAK1Q9H792 1746 aa25.54■■□□□ 1.68
VRK2-205ENST00000432057 RRS1Q15050 365 aaKnown RBP25.54■■□□□ 1.68
VRK2-205ENST00000432057 CRBNQ96SW2 442 aa25.54■■□□□ 1.68
VRK2-205ENST00000432057 NPHP4O75161 1426 aaPredicted RBP25.54■■□□□ 1.68
VRK2-205ENST00000432057 C20orf194Q5TEA3 1177 aa25.53■■□□□ 1.68
VRK2-205ENST00000432057 TMPOP42166 694 aaKnown RBP25.53■■□□□ 1.68
VRK2-205ENST00000432057 DLG5Q8TDM6 1919 aa25.51■■□□□ 1.67
VRK2-205ENST00000432057 MARF1Q9Y4F3 1742 aaKnown RBP25.51■■□□□ 1.67
VRK2-205ENST00000432057 RSPH6AQ9H0K4 717 aa25.5■■□□□ 1.67
VRK2-205ENST00000432057 IL13P35225 146 aa25.49■■□□□ 1.67
VRK2-205ENST00000432057 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.49■■□□□ 1.67
VRK2-205ENST00000432057 PNNQ9H307 717 aaKnown RBP25.49■■□□□ 1.67
VRK2-205ENST00000432057 FCHSD2O94868 740 aa25.49■■□□□ 1.67
VRK2-205ENST00000432057 NGDNQ8NEJ9 315 aaKnown RBP25.49■■□□□ 1.67
VRK2-205ENST00000432057 TTC21AQ8NDW8 1320 aa25.48■■□□□ 1.67
VRK2-205ENST00000432057 BCAR3O75815 825 aa25.48■■□□□ 1.67
VRK2-205ENST00000432057 TRIM35Q9UPQ4 493 aa25.48■■□□□ 1.67
VRK2-205ENST00000432057 PRKAR2BP31323 418 aa25.47■■□□□ 1.67
VRK2-205ENST00000432057 USP54Q70EL1 1684 aa25.47■■□□□ 1.67
VRK2-205ENST00000432057 NWD1Q149M9 1564 aa25.47■■□□□ 1.67
VRK2-205ENST00000432057 USP31Q70CQ4 1352 aa25.46■■□□□ 1.67
VRK2-205ENST00000432057 HMOX1P09601 288 aa25.46■■□□□ 1.67
VRK2-205ENST00000432057 MYH16Q9H6N6 1097 aa25.45■■□□□ 1.66
VRK2-205ENST00000432057 RGPD1P0DJD0 1748 aa25.44■■□□□ 1.66
VRK2-205ENST00000432057 RIPK4P57078 832 aa25.44■■□□□ 1.66
VRK2-205ENST00000432057 ADGRL3Q9HAR2 1447 aa25.44■■□□□ 1.66
VRK2-205ENST00000432057 RBM33Q96EV2 1170 aaKnown RBP25.43■■□□□ 1.66
VRK2-205ENST00000432057 KDM4FA0A1W2PPD8 638 aa25.41■■□□□ 1.66
VRK2-205ENST00000432057 FANCIQ9NVI1 1328 aa25.4■■□□□ 1.66
VRK2-205ENST00000432057 SOX12O15370 315 aa25.39■■□□□ 1.66
VRK2-205ENST00000432057 NEFMP07197 916 aa25.39■■□□□ 1.66
VRK2-205ENST00000432057 TSR2Q969E8 191 aaKnown RBP25.39■■□□□ 1.66
VRK2-205ENST00000432057 PHACTR3Q96KR7 559 aa25.39■■□□□ 1.66
VRK2-205ENST00000432057 RARSP54136 660 aaKnown RBP25.38■■□□□ 1.65
VRK2-205ENST00000432057 IL16Q14005 1332 aa25.38■■□□□ 1.65
VRK2-205ENST00000432057 EIF4A2Q14240 407 aaKnown RBP25.37■■□□□ 1.65
VRK2-205ENST00000432057 NFE2L2Q16236 605 aa25.37■■□□□ 1.65
VRK2-205ENST00000432057 RBM19Q9Y4C8 960 aaKnown RBP25.36■■□□□ 1.65
VRK2-205ENST00000432057 PHF8Q9UPP1 1060 aa25.34■■□□□ 1.65
VRK2-205ENST00000432057 MAP3K19Q56UN5 1328 aa25.34■■□□□ 1.65
VRK2-205ENST00000432057 LTN1O94822 1766 aa25.33■■□□□ 1.65
VRK2-205ENST00000432057 CANXP27824 592 aaKnown RBP25.33■■□□□ 1.65
VRK2-205ENST00000432057 HSP90AB2PQ58FF8 381 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms