RNA–Protein interactions for RNA: ENST00000430771.2

CHD4-202, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 527 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-202ENST00000430771 ANKRD26Q9UPS8 1709 aa15.14■□□□□ 0.01
CHD4-202ENST00000430771 PIK3C2AO00443 1686 aa15.14■□□□□ 0.01
CHD4-202ENST00000430771 SOS2Q07890 1332 aaPredicted RBP15.14■□□□□ 0.01
CHD4-202ENST00000430771 TTC21AQ8NDW8 1320 aa15.14■□□□□ 0.01
CHD4-202ENST00000430771 MED1Q15648 1581 aaPredicted RBP15.13■□□□□ 0.01
CHD4-202ENST00000430771 SSH2Q76I76 1423 aa15.13■□□□□ 0.01
CHD4-202ENST00000430771 PANK3Q9H999 370 aa15.13■□□□□ 0.01
CHD4-202ENST00000430771 KRT28Q7Z3Y7 464 aa15.12■□□□□ 0.01
CHD4-202ENST00000430771 FBXO41Q8TF61 875 aa15.12■□□□□ 0.01
CHD4-202ENST00000430771 SHPRHQ149N8 1683 aa15.12■□□□□ 0.01
CHD4-202ENST00000430771 ARHGEF10O15013 1369 aa15.11■□□□□ 0.01
CHD4-202ENST00000430771 NSD2O96028 1365 aa15.11■□□□□ 0.01
CHD4-202ENST00000430771 XPCQ01831 940 aaPredicted RBP15.11■□□□□ 0.01
CHD4-202ENST00000430771 COL22A1Q8NFW1 1626 aaPredicted RBP15.1■□□□□ 0.01
CHD4-202ENST00000430771 DDX17Q92841 729 aaKnown RBP15.1■□□□□ 0.01
CHD4-202ENST00000430771 KNSTRNQ9Y448 316 aa15.1■□□□□ 0.01
CHD4-202ENST00000430771 CGNL1Q0VF96 1302 aa15.1■□□□□ 0.01
CHD4-202ENST00000430771 TTC21BQ7Z4L5 1316 aa15.1■□□□□ 0.01
CHD4-202ENST00000430771 ABCA3Q99758 1704 aa15.09■□□□□ 0.01
CHD4-202ENST00000430771 PAK3O75914 559 aaPredicted RBP15.09■□□□□ 0.01
CHD4-202ENST00000430771 PHRF1Q9P1Y6 1649 aaKnown RBP15.09■□□□□ 0.01
CHD4-202ENST00000430771 MARF1Q9Y4F3 1742 aaKnown RBP15.09■□□□□ 0.01
CHD4-202ENST00000430771 CRYBG1Q9Y4K1 1723 aa15.09■□□□□ 0.01
CHD4-202ENST00000430771 DDX10Q13206 875 aaKnown RBP15.08■□□□□ 0
CHD4-202ENST00000430771 SPATA31A3Q5VYP0 1347 aa15.08■□□□□ 0
CHD4-202ENST00000430771 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.07■□□□□ 0
CHD4-202ENST00000430771 LRRC59Q96AG4 307 aaKnown RBP15.07■□□□□ 0
CHD4-202ENST00000430771 OVOS2A0A0J9YW53 1432 aa15.07■□□□□ 0
CHD4-202ENST00000430771 OVOS2Q6IE36 1432 aa15.07■□□□□ 0
CHD4-202ENST00000430771 ILDR1Q86SU0 546 aaPredicted RBP15.06■□□□□ 0
CHD4-202ENST00000430771 CARD14Q9BXL6 1004 aa15.06■□□□□ 0
CHD4-202ENST00000430771 USP31Q70CQ4 1352 aa15.06■□□□□ 0
CHD4-202ENST00000430771 JCADQ9P266 1359 aa15.06■□□□□ 0
CHD4-202ENST00000430771 NPC1L1Q9UHC9 1359 aa15.06■□□□□ 0
CHD4-202ENST00000430771 SLIT3O75094 1523 aa15.06■□□□□ 0
CHD4-202ENST00000430771 LMOD2Q6P5Q4 547 aa15.05■□□□□ -0
CHD4-202ENST00000430771 ABTB2Q8N961 1025 aa15.05■□□□□ -0
CHD4-202ENST00000430771 PNPLA6Q8IY17 1366 aa15.05■□□□□ -0
CHD4-202ENST00000430771 HSPA1LP34931 641 aa15.04■□□□□ -0
CHD4-202ENST00000430771 PER1O15534 1290 aaPredicted RBP15.03■□□□□ -0
CHD4-202ENST00000430771 NLRP13Q86W25 1043 aa15.03■□□□□ -0
CHD4-202ENST00000430771 NME9Q86XW9 330 aa15.03■□□□□ -0
CHD4-202ENST00000430771 USP19O94966 1318 aa15.02■□□□□ -0
CHD4-202ENST00000430771 COG3Q96JB2 828 aa15.02■□□□□ -0
CHD4-202ENST00000430771 NLRP6P59044 892 aa15.01□□□□□ -0.01
CHD4-202ENST00000430771 AMER1Q5JTC6 1135 aaPredicted RBP15.01□□□□□ -0.01
CHD4-202ENST00000430771 FYB1O15117 783 aa15□□□□□ -0.01
CHD4-202ENST00000430771 GGNBP2Q9H3C7 697 aa15□□□□□ -0.01
CHD4-202ENST00000430771 NFAT5O94916 1531 aa15□□□□□ -0.01
CHD4-202ENST00000430771 LTN1O94822 1766 aa14.99□□□□□ -0.01
CHD4-202ENST00000430771 NUTM2GQ5VZR2 741 aa14.99□□□□□ -0.01
CHD4-202ENST00000430771 SPATA31A6Q5VVP1 1343 aa14.98□□□□□ -0.01
CHD4-202ENST00000430771 ABCC6O95255 1503 aa14.98□□□□□ -0.01
CHD4-202ENST00000430771 HAP1P54257 671 aaPredicted RBP14.98□□□□□ -0.01
CHD4-202ENST00000430771 CC2D1BQ5T0F9 858 aaKnown RBP14.98□□□□□ -0.01
CHD4-202ENST00000430771 KCNH5Q8NCM2 988 aa14.98□□□□□ -0.01
CHD4-202ENST00000430771 PARD3Q8TEW0 1356 aa14.97□□□□□ -0.01
CHD4-202ENST00000430771 MORC1Q86VD1 984 aa14.96□□□□□ -0.01
CHD4-202ENST00000430771 AATKQ6ZMQ8 1374 aa14.96□□□□□ -0.02
CHD4-202ENST00000430771 ZRANB1Q9UGI0 708 aa14.95□□□□□ -0.02
CHD4-202ENST00000430771 COL14A1Q05707 1796 aaKnown RBP14.95□□□□□ -0.02
CHD4-202ENST00000430771 SMG6Q86US8 1419 aaKnown RBP14.94□□□□□ -0.02
CHD4-202ENST00000430771 RALBP1Q15311 655 aa14.94□□□□□ -0.02
CHD4-202ENST00000430771 RTL1A6NKG5 1358 aa14.94□□□□□ -0.02
CHD4-202ENST00000430771 CPDO75976 1380 aa14.94□□□□□ -0.02
CHD4-202ENST00000430771 MAP2P11137 1827 aaKnown RBP14.94□□□□□ -0.02
CHD4-202ENST00000430771 PLCH1Q4KWH8 1693 aa14.93□□□□□ -0.02
CHD4-202ENST00000430771 LRP6O75581 1613 aa14.93□□□□□ -0.02
CHD4-202ENST00000430771 ANP32CO43423 234 aa14.93□□□□□ -0.02
CHD4-202ENST00000430771 PLEKHG5O94827 1062 aa14.93□□□□□ -0.02
CHD4-202ENST00000430771 SOX12O15370 315 aa14.92□□□□□ -0.02
CHD4-202ENST00000430771 GCP02774 474 aa14.92□□□□□ -0.02
CHD4-202ENST00000430771 CNGB1Q14028 1251 aaPredicted RBP14.92□□□□□ -0.02
CHD4-202ENST00000430771 CABLES1Q8TDN4 633 aa14.92□□□□□ -0.02
CHD4-202ENST00000430771 KIF24Q5T7B8 1368 aa14.92□□□□□ -0.02
CHD4-202ENST00000430771 CDK12Q9NYV4 1490 aaPredicted RBP14.92□□□□□ -0.02
CHD4-202ENST00000430771 LMO7Q8WWI1 1683 aa14.91□□□□□ -0.02
CHD4-202ENST00000430771 DIEXFQ68CQ4 756 aaKnown RBP14.91□□□□□ -0.02
CHD4-202ENST00000430771 NWD2Q9ULI1 1742 aa14.91□□□□□ -0.02
CHD4-202ENST00000430771 KIAA0232Q92628 1395 aa14.9□□□□□ -0.02
CHD4-202ENST00000430771 PEAK1Q9H792 1746 aa14.9□□□□□ -0.02
CHD4-202ENST00000430771 PRKRIP1Q9H875 184 aaPredicted RBP14.9□□□□□ -0.02
CHD4-202ENST00000430771 FAM208AQ9UK61 1670 aaKnown RBP14.9□□□□□ -0.02
CHD4-202ENST00000430771 MYBBP1AQ9BQG0 1328 aaKnown RBP14.9□□□□□ -0.02
CHD4-202ENST00000430771 FLT4P35916 1363 aa14.89□□□□□ -0.03
CHD4-202ENST00000430771 NUTM2BA6NNL0 878 aaPredicted RBP14.89□□□□□ -0.03
CHD4-202ENST00000430771 NUTM2EB1AL46 878 aaPredicted RBP14.89□□□□□ -0.03
CHD4-202ENST00000430771 TNNT2P45379 298 aaPredicted RBP14.89□□□□□ -0.03
CHD4-202ENST00000430771 NUTM2AQ8IVF1 878 aaPredicted RBP14.89□□□□□ -0.03
CHD4-202ENST00000430771 PRDM11Q9NQV5 511 aa14.89□□□□□ -0.03
CHD4-202ENST00000430771 BLMP54132 1417 aaPredicted RBP14.89□□□□□ -0.03
CHD4-202ENST00000430771 COL18A1P39060 1754 aa14.88□□□□□ -0.03
CHD4-202ENST00000430771 MEX3CQ5U5Q3 659 aaKnown RBP14.88□□□□□ -0.03
CHD4-202ENST00000430771 NRAPQ86VF7 1730 aa14.88□□□□□ -0.03
CHD4-202ENST00000430771 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.88□□□□□ -0.03
CHD4-202ENST00000430771 MAP3K19Q56UN5 1328 aa14.88□□□□□ -0.03
CHD4-202ENST00000430771 ZBTB7CA1YPR0 619 aa14.87□□□□□ -0.03
CHD4-202ENST00000430771 ZC3H6P61129 1189 aaKnown RBP14.87□□□□□ -0.03
CHD4-202ENST00000430771 RRS1Q15050 365 aaKnown RBP14.87□□□□□ -0.03
CHD4-202ENST00000430771 ARHGEF25Q86VW2 580 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms