RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TOPAZ1Q8N9V7 1692 aa21.1■□□□□ 0.97
SDC1-204ENST00000429035 PHRF1Q9P1Y6 1649 aaKnown RBP21.1■□□□□ 0.97
SDC1-204ENST00000429035 FAM83GA6ND36 823 aa21.08■□□□□ 0.97
SDC1-204ENST00000429035 BLMP54132 1417 aaPredicted RBP21.08■□□□□ 0.97
SDC1-204ENST00000429035 BTG4Q9NY30 223 aa21.08■□□□□ 0.97
SDC1-204ENST00000429035 CCDC125Q86Z20 511 aa21.07■□□□□ 0.96
SDC1-204ENST00000429035 ZRANB1Q9UGI0 708 aa21.07■□□□□ 0.96
SDC1-204ENST00000429035 SF3B2Q13435 895 aaKnown RBP21.06■□□□□ 0.96
SDC1-204ENST00000429035 NUDT16Q96DE0 195 aaKnown RBP21.06■□□□□ 0.96
SDC1-204ENST00000429035 FAM98CQ17RN3 349 aaKnown RBP21.04■□□□□ 0.96
SDC1-204ENST00000429035 KRT27Q7Z3Y8 459 aa21.04■□□□□ 0.96
SDC1-204ENST00000429035 CDK19Q9BWU1 502 aa21.04■□□□□ 0.96
SDC1-204ENST00000429035 PRDM11Q9NQV5 511 aa21.04■□□□□ 0.96
SDC1-204ENST00000429035 QRICH2Q9H0J4 1663 aa21.04■□□□□ 0.96
SDC1-204ENST00000429035 NUTM2GQ5VZR2 741 aa21.02■□□□□ 0.96
SDC1-204ENST00000429035 DEFB132Q7Z7B7 95 aa21.02■□□□□ 0.96
SDC1-204ENST00000429035 NBPF1Q3BBV0 1214 aa20.99■□□□□ 0.95
SDC1-204ENST00000429035 KIAA0232Q92628 1395 aa20.98■□□□□ 0.95
SDC1-204ENST00000429035 NRKQ7Z2Y5 1582 aa20.98■□□□□ 0.95
SDC1-204ENST00000429035 CHRNA2Q15822 529 aa20.98■□□□□ 0.95
SDC1-204ENST00000429035 ACEP12821 1306 aa20.98■□□□□ 0.95
SDC1-204ENST00000429035 RGPD1P0DJD0 1748 aa20.98■□□□□ 0.95
SDC1-204ENST00000429035 THSD7AQ9UPZ6 1657 aa20.97■□□□□ 0.95
SDC1-204ENST00000429035 SRPK2P78362 688 aaKnown RBP20.97■□□□□ 0.95
SDC1-204ENST00000429035 STRN4Q9NRL3 753 aa20.97■□□□□ 0.95
SDC1-204ENST00000429035 ONECUT3O60422 494 aaPredicted RBP20.96■□□□□ 0.95
SDC1-204ENST00000429035 ZC3H6P61129 1189 aaKnown RBP20.96■□□□□ 0.95
SDC1-204ENST00000429035 CENPJQ9HC77 1338 aaPredicted RBP20.96■□□□□ 0.95
SDC1-204ENST00000429035 POLR3AO14802 1390 aaPredicted RBP20.96■□□□□ 0.95
SDC1-204ENST00000429035 PPIP5K1Q6PFW1 1433 aa20.95■□□□□ 0.95
SDC1-204ENST00000429035 CCDC61Q9Y6R9 512 aa20.95■□□□□ 0.94
SDC1-204ENST00000429035 SPATA31A5Q5VU36 1347 aa20.95■□□□□ 0.94
SDC1-204ENST00000429035 SPATA31A7Q8IWB4 1347 aa20.95■□□□□ 0.94
SDC1-204ENST00000429035 NBPF8Q3BBV2 869 aa20.93■□□□□ 0.94
SDC1-204ENST00000429035 FAM182BQ5T319 152 aa20.93■□□□□ 0.94
SDC1-204ENST00000429035 TRPM1Q7Z4N2 1603 aa20.93■□□□□ 0.94
SDC1-204ENST00000429035 BAG6P46379 1132 aa20.92■□□□□ 0.94
SDC1-204ENST00000429035 ABTB2Q8N961 1025 aa20.92■□□□□ 0.94
SDC1-204ENST00000429035 CABP2Q9NPB3 220 aa20.92■□□□□ 0.94
SDC1-204ENST00000429035 TNS1Q9HBL0 1735 aaKnown RBP20.91■□□□□ 0.94
SDC1-204ENST00000429035 USP35Q9P2H5 1018 aa20.91■□□□□ 0.94
SDC1-204ENST00000429035 SPATA31A1Q5TZJ5 1347 aa20.89■□□□□ 0.93
SDC1-204ENST00000429035 PLEKHG3A1L390 1219 aa20.89■□□□□ 0.93
SDC1-204ENST00000429035 ZBTB7CA1YPR0 619 aa20.89■□□□□ 0.93
SDC1-204ENST00000429035 EVA1CP58658 441 aa20.88■□□□□ 0.93
SDC1-204ENST00000429035 SRCAPQ6ZRS2 3230 aa20.88■□□□□ 0.93
SDC1-204ENST00000429035 SSH2Q76I76 1423 aa20.87■□□□□ 0.93
SDC1-204ENST00000429035 LMO7Q8WWI1 1683 aa20.87■□□□□ 0.93
SDC1-204ENST00000429035 NEUROD1Q13562 356 aa20.87■□□□□ 0.93
SDC1-204ENST00000429035 L3MBTL2Q969R5 705 aa20.87■□□□□ 0.93
SDC1-204ENST00000429035 SIN3AQ96ST3 1273 aa20.86■□□□□ 0.93
SDC1-204ENST00000429035 PSDA5PKW4 1024 aaPredicted RBP20.85■□□□□ 0.93
SDC1-204ENST00000429035 CAMTA1Q9Y6Y1 1673 aa20.85■□□□□ 0.93
SDC1-204ENST00000429035 ROCK2O75116 1388 aaKnown RBP20.85■□□□□ 0.93
SDC1-204ENST00000429035 USP19O94966 1318 aa20.84■□□□□ 0.93
SDC1-204ENST00000429035 EN1Q05925 392 aaPredicted RBP20.84■□□□□ 0.93
SDC1-204ENST00000429035 NLRP13Q86W25 1043 aa20.84■□□□□ 0.93
SDC1-204ENST00000429035 USP6P35125 1406 aa20.83■□□□□ 0.93
SDC1-204ENST00000429035 PIK3C2AO00443 1686 aa20.83■□□□□ 0.92
SDC1-204ENST00000429035 LARP1Q6PKG0 1096 aaKnown RBP20.82■□□□□ 0.92
SDC1-204ENST00000429035 CABP1Q9NZU7 370 aa20.82■□□□□ 0.92
SDC1-204ENST00000429035 CPDO75976 1380 aa20.82■□□□□ 0.92
SDC1-204ENST00000429035 AKAP12Q02952 1782 aa20.82■□□□□ 0.92
SDC1-204ENST00000429035 LRP5O75197 1615 aa20.82■□□□□ 0.92
SDC1-204ENST00000429035 EVC2Q86UK5 1308 aa20.81■□□□□ 0.92
SDC1-204ENST00000429035 GCP02774 474 aa20.8■□□□□ 0.92
SDC1-204ENST00000429035 TRIM37O94972 964 aa20.79■□□□□ 0.92
SDC1-204ENST00000429035 PDE3BQ13370 1112 aa20.79■□□□□ 0.92
SDC1-204ENST00000429035 COL5A2P05997 1499 aaPredicted RBP20.79■□□□□ 0.92
SDC1-204ENST00000429035 SLIT3O75094 1523 aa20.78■□□□□ 0.92
SDC1-204ENST00000429035 BRD4O60885 1362 aaPredicted RBP20.78■□□□□ 0.92
SDC1-204ENST00000429035 NLRP6P59044 892 aa20.78■□□□□ 0.92
SDC1-204ENST00000429035 PARP4Q9UKK3 1724 aaKnown RBP20.78■□□□□ 0.92
SDC1-204ENST00000429035 FAM196AQ6ZSG2 479 aa20.77■□□□□ 0.92
SDC1-204ENST00000429035 TCP11L2Q8N4U5 519 aa20.77■□□□□ 0.92
SDC1-204ENST00000429035 DISP2A7MBM2 1401 aa20.77■□□□□ 0.91
SDC1-204ENST00000429035 WNK3Q9BYP7 1800 aa20.76■□□□□ 0.91
SDC1-204ENST00000429035 EZH2Q15910 746 aaKnown RBP20.76■□□□□ 0.91
SDC1-204ENST00000429035 BARGINQ6ZT62 677 aa20.76■□□□□ 0.91
SDC1-204ENST00000429035 SOX12O15370 315 aa20.75■□□□□ 0.91
SDC1-204ENST00000429035 RGPD5Q99666 1765 aa20.74■□□□□ 0.91
SDC1-204ENST00000429035 LRRC37A3O60309 1634 aa20.74■□□□□ 0.91
SDC1-204ENST00000429035 RREB1Q92766 1687 aa20.73■□□□□ 0.91
SDC1-204ENST00000429035 CRB1P82279 1406 aa20.73■□□□□ 0.91
SDC1-204ENST00000429035 APBA3O96018 575 aa20.73■□□□□ 0.91
SDC1-204ENST00000429035 R3HDM1Q15032 1099 aaKnown RBP20.73■□□□□ 0.91
SDC1-204ENST00000429035 NUP188Q5SRE5 1749 aa20.73■□□□□ 0.91
SDC1-204ENST00000429035 MON2Q7Z3U7 1717 aa20.72■□□□□ 0.91
SDC1-204ENST00000429035 COL18A1P39060 1754 aa20.72■□□□□ 0.91
SDC1-204ENST00000429035 THRAP3Q9Y2W1 955 aaKnown RBP20.71■□□□□ 0.91
SDC1-204ENST00000429035 CPSF1Q10570 1443 aaKnown RBP20.7■□□□□ 0.9
SDC1-204ENST00000429035 TOM1L2Q6ZVM7 507 aa20.7■□□□□ 0.9
SDC1-204ENST00000429035 AATKQ6ZMQ8 1374 aa20.7■□□□□ 0.9
SDC1-204ENST00000429035 TTC21BQ7Z4L5 1316 aa20.69■□□□□ 0.9
SDC1-204ENST00000429035 KTN1Q86UP2 1357 aaKnown RBP20.68■□□□□ 0.9
SDC1-204ENST00000429035 CAMKK2Q96RR4 588 aa20.67■□□□□ 0.9
SDC1-204ENST00000429035 TONSLQ96HA7 1378 aa20.67■□□□□ 0.9
SDC1-204ENST00000429035 OVOS2A0A0G2JMS6 1433 aa20.67■□□□□ 0.9
SDC1-204ENST00000429035 OVOS2A0A0J9YW53 1432 aa20.67■□□□□ 0.9
SDC1-204ENST00000429035 OVOS2Q6IE36 1432 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms