RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 TSPY10P0CW01 314 aa6.43□□□□□ -1.38
RIF1-203ENST00000428287 NCLP19338 710 aaKnown RBP6.43□□□□□ -1.38
RIF1-203ENST00000428287 RBM10P98175 930 aaKnown RBP6.43□□□□□ -1.38
RIF1-203ENST00000428287 COG6Q9Y2V7 657 aa6.43□□□□□ -1.38
RIF1-203ENST00000428287 PDZRN3Q9UPQ7 1066 aa6.43□□□□□ -1.38
RIF1-203ENST00000428287 DMTNQ08495 405 aa6.43□□□□□ -1.38
RIF1-203ENST00000428287 GZF1Q9H116 711 aaPredicted RBP6.43□□□□□ -1.38
RIF1-203ENST00000428287 RWDD1Q9H446 243 aaPredicted RBP6.43□□□□□ -1.38
RIF1-203ENST00000428287 MYOM2P54296 1465 aa6.42□□□□□ -1.38
RIF1-203ENST00000428287 PPIP5K1Q6PFW1 1433 aa6.42□□□□□ -1.38
RIF1-203ENST00000428287 HSP90AB1P08238 724 aaKnown RBP6.42□□□□□ -1.38
RIF1-203ENST00000428287 HMGN5P82970 282 aaKnown RBP6.42□□□□□ -1.38
RIF1-203ENST00000428287 POLR3GLQ9BT43 218 aa6.42□□□□□ -1.38
RIF1-203ENST00000428287 MVPQ14764 893 aaKnown RBP6.42□□□□□ -1.38
RIF1-203ENST00000428287 ZNF428Q96B54 188 aa6.42□□□□□ -1.38
RIF1-203ENST00000428287 PANK1Q8TE04 598 aa6.42□□□□□ -1.38
RIF1-203ENST00000428287 ZNF326Q5BKZ1 582 aaKnown RBP6.42□□□□□ -1.38
RIF1-203ENST00000428287 ABCC11Q96J66 1382 aa6.41□□□□□ -1.38
RIF1-203ENST00000428287 CSPP1Q1MSJ5 1256 aa6.41□□□□□ -1.38
RIF1-203ENST00000428287 ZBTB40Q9NUA8 1239 aa6.41□□□□□ -1.38
RIF1-203ENST00000428287 ERVK-7P63135 1459 aa6.41□□□□□ -1.38
RIF1-203ENST00000428287 SLC20A2Q08357 652 aa6.41□□□□□ -1.38
RIF1-203ENST00000428287 CHD4Q14839 1912 aa6.41□□□□□ -1.38
RIF1-203ENST00000428287 BAG4O95429 457 aaKnown RBP6.41□□□□□ -1.38
RIF1-203ENST00000428287 PREX1Q8TCU6 1659 aa6.41□□□□□ -1.38
RIF1-203ENST00000428287 ZNF518AQ6AHZ1 1483 aa6.41□□□□□ -1.38
RIF1-203ENST00000428287 CC2D1BQ5T0F9 858 aaKnown RBP6.41□□□□□ -1.38
RIF1-203ENST00000428287 MYRIPQ8NFW9 859 aa6.41□□□□□ -1.38
RIF1-203ENST00000428287 PIK3R4Q99570 1358 aa6.4□□□□□ -1.38
RIF1-203ENST00000428287 KDM2AQ9Y2K7 1162 aa6.4□□□□□ -1.38
RIF1-203ENST00000428287 NRXN1Q9ULB1 1477 aa6.4□□□□□ -1.38
RIF1-203ENST00000428287 CDC42BPGQ6DT37 1551 aa6.4□□□□□ -1.38
RIF1-203ENST00000428287 ITSN1Q15811 1721 aa6.4□□□□□ -1.38
RIF1-203ENST00000428287 MYH7BA7E2Y1 1941 aa6.4□□□□□ -1.38
RIF1-203ENST00000428287 PRIMPOLQ96LW4 560 aa6.4□□□□□ -1.38
RIF1-203ENST00000428287 PUS7Q96PZ0 661 aaKnown RBP6.4□□□□□ -1.38
RIF1-203ENST00000428287 GTPBP4Q9BZE4 634 aaKnown RBP6.4□□□□□ -1.39
RIF1-203ENST00000428287 SPTLC3Q9NUV7 552 aa6.4□□□□□ -1.39
RIF1-203ENST00000428287 ASXL2Q76L83 1435 aa6.4□□□□□ -1.39
RIF1-203ENST00000428287 ERCC6Q03468 1493 aa6.4□□□□□ -1.39
RIF1-203ENST00000428287 CNGB1Q14028 1251 aaPredicted RBP6.4□□□□□ -1.39
RIF1-203ENST00000428287 CARD14Q9BXL6 1004 aa6.4□□□□□ -1.39
RIF1-203ENST00000428287 CLTCQ00610 1675 aaKnown RBP6.39□□□□□ -1.39
RIF1-203ENST00000428287 HSCBQ8IWL3 235 aa6.39□□□□□ -1.39
RIF1-203ENST00000428287 LMBRD1Q9NUN5 540 aa6.39□□□□□ -1.39
RIF1-203ENST00000428287 NUCB2P80303 420 aa6.39□□□□□ -1.39
RIF1-203ENST00000428287 MICAL3Q7RTP6 2002 aa6.38□□□□□ -1.39
RIF1-203ENST00000428287 ABCA9Q8IUA7 1624 aa6.38□□□□□ -1.39
RIF1-203ENST00000428287 MSNP26038 577 aaKnown RBP6.38□□□□□ -1.39
RIF1-203ENST00000428287 CCDC94Q9BW85 323 aaPredicted RBP6.38□□□□□ -1.39
RIF1-203ENST00000428287 IL17RAQ96F46 866 aa6.38□□□□□ -1.39
RIF1-203ENST00000428287 SYCP2Q9BX26 1530 aa6.38□□□□□ -1.39
RIF1-203ENST00000428287 CD2BP2O95400 341 aaKnown RBP6.38□□□□□ -1.39
RIF1-203ENST00000428287 NUCB1Q02818 461 aa6.38□□□□□ -1.39
RIF1-203ENST00000428287 ARAP3Q8WWN8 1544 aa6.38□□□□□ -1.39
RIF1-203ENST00000428287 PLEKHG5O94827 1062 aa6.38□□□□□ -1.39
RIF1-203ENST00000428287 ATF7IPQ6VMQ6 1270 aa6.38□□□□□ -1.39
RIF1-203ENST00000428287 IL16Q14005 1332 aa6.38□□□□□ -1.39
RIF1-203ENST00000428287 LETM1O95202 739 aaPredicted RBP6.37□□□□□ -1.39
RIF1-203ENST00000428287 FKBP5Q13451 457 aaPredicted RBP6.37□□□□□ -1.39
RIF1-203ENST00000428287 DDX19BQ9UMR2 479 aa6.37□□□□□ -1.39
RIF1-203ENST00000428287 TRIM27P14373 513 aa6.37□□□□□ -1.39
RIF1-203ENST00000428287 RUNDC1Q96C34 613 aa6.37□□□□□ -1.39
RIF1-203ENST00000428287 K7ELQ4 463 aaPredicted RBP6.37□□□□□ -1.39
RIF1-203ENST00000428287 ANP32BQ92688 251 aaKnown RBP6.37□□□□□ -1.39
RIF1-203ENST00000428287 ADGRB1O14514 1584 aa6.37□□□□□ -1.39
RIF1-203ENST00000428287 GTF2E1P29083 439 aaPredicted RBP6.37□□□□□ -1.39
RIF1-203ENST00000428287 TCP11L2Q8N4U5 519 aa6.37□□□□□ -1.39
RIF1-203ENST00000428287 FAM184AQ8NB25 1140 aa6.37□□□□□ -1.39
RIF1-203ENST00000428287 MROH2AA6NES4 1674 aa6.36□□□□□ -1.39
RIF1-203ENST00000428287 CRYBG1Q9Y4K1 1723 aa6.36□□□□□ -1.39
RIF1-203ENST00000428287 GOLGA6L22H0YM25 854 aa6.36□□□□□ -1.39
RIF1-203ENST00000428287 PRIM1P49642 420 aaKnown RBP6.36□□□□□ -1.39
RIF1-203ENST00000428287 TAF3Q5VWG9 929 aa6.36□□□□□ -1.39
RIF1-203ENST00000428287 SASS6Q6UVJ0 657 aa6.36□□□□□ -1.39
RIF1-203ENST00000428287 FAM13BQ9NYF5 915 aa6.36□□□□□ -1.39
RIF1-203ENST00000428287 MROH1Q8NDA8 1641 aa6.36□□□□□ -1.39
RIF1-203ENST00000428287 DDX49Q9Y6V7 483 aaKnown RBP6.36□□□□□ -1.39
RIF1-203ENST00000428287 CARMIL2Q6F5E8 1435 aa6.36□□□□□ -1.39
RIF1-203ENST00000428287 MYH3P11055 1940 aa6.36□□□□□ -1.39
RIF1-203ENST00000428287 CWC22Q9HCG8 908 aaKnown RBP6.36□□□□□ -1.39
RIF1-203ENST00000428287 CTIFO43310 598 aaKnown RBP6.36□□□□□ -1.39
RIF1-203ENST00000428287 PIBF1Q8WXW3 757 aa6.36□□□□□ -1.39
RIF1-203ENST00000428287 ZKSCAN2Q63HK3 967 aa6.36□□□□□ -1.39
RIF1-203ENST00000428287 DZIP1LQ8IYY4 767 aaKnown RBP6.36□□□□□ -1.39
RIF1-203ENST00000428287 CFAP44Q96MT7 982 aa6.36□□□□□ -1.39
RIF1-203ENST00000428287 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.36□□□□□ -1.392e-6■■□□□ 11.5
RIF1-203ENST00000428287 CD109Q6YHK3 1445 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 MBD3O95983 291 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 TRAPPC8Q9Y2L5 1435 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 GAS2L2Q8NHY3 880 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 FEZ1Q99689 392 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 ZNF710Q8N1W2 664 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 KAT6AQ92794 2004 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 FRMPD1Q5SYB0 1578 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 RBSNQ9H1K0 784 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 ZDHHC9Q9Y397 364 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 PTCH1Q13635 1447 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 ZCCHC11Q5TAX3 1644 aaKnown RBP6.35□□□□□ -1.39
RIF1-203ENST00000428287 UQCRHLA0A096LP55 91 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms