RNA–Protein interactions for RNA: ENST00000427635.6

HERC4-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 6,391 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-206ENST00000427635 RCAN3Q9UKA8 241 aa6.88□□□□□ -1.31
HERC4-206ENST00000427635 CHMP4BP1P59074 171 aa6.88□□□□□ -1.31
HERC4-206ENST00000427635 FKBP5Q13451 457 aaPredicted RBP6.88□□□□□ -1.31
HERC4-206ENST00000427635 SLC24A3Q9HC58 644 aa6.88□□□□□ -1.31
HERC4-206ENST00000427635 TNIP1Q15025 636 aa6.88□□□□□ -1.31
HERC4-206ENST00000427635 RBM26Q5T8P6 1007 aaKnown RBP6.88□□□□□ -1.31
HERC4-206ENST00000427635 HOMER1Q86YM7 354 aa6.88□□□□□ -1.31
HERC4-206ENST00000427635 ZNF622Q969S3 477 aaKnown RBP eCLIP6.88□□□□□ -1.31
HERC4-206ENST00000427635 NINLQ9Y2I6 1382 aa6.88□□□□□ -1.31
HERC4-206ENST00000427635 ANKRD45Q5TZF3 282 aa6.88□□□□□ -1.31
HERC4-206ENST00000427635 TXNDC2Q86VQ3 553 aa6.88□□□□□ -1.31
HERC4-206ENST00000427635 ANKLE2Q86XL3 938 aa6.88□□□□□ -1.31
HERC4-206ENST00000427635 VASPP50552 380 aaPredicted RBP6.87□□□□□ -1.31
HERC4-206ENST00000427635 PLCD3Q8N3E9 789 aa6.87□□□□□ -1.31
HERC4-206ENST00000427635 MAGEC2Q9UBF1 373 aaPredicted RBP6.87□□□□□ -1.31
HERC4-206ENST00000427635 ZNF76P36508 570 aa6.87□□□□□ -1.31
HERC4-206ENST00000427635 DDX54Q8TDD1 881 aaKnown RBP6.87□□□□□ -1.31
HERC4-206ENST00000427635 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.87□□□□□ -1.313e-7■■■□□ 18.5
HERC4-206ENST00000427635 ANKRD62A6NC57 917 aa6.87□□□□□ -1.31
HERC4-206ENST00000427635 ZPR1O75312 459 aa6.87□□□□□ -1.31
HERC4-206ENST00000427635 SOGA3Q5TF21 947 aa6.87□□□□□ -1.31
HERC4-206ENST00000427635 OLFM4Q6UX06 510 aa6.87□□□□□ -1.31
HERC4-206ENST00000427635 ELL2O00472 640 aaPredicted RBP6.87□□□□□ -1.31
HERC4-206ENST00000427635 CALRP27797 417 aaKnown RBP6.87□□□□□ -1.31
HERC4-206ENST00000427635 CCDC158Q5M9N0 1113 aa6.87□□□□□ -1.31
HERC4-206ENST00000427635 MPHOSPH6Q99547 160 aaKnown RBP6.87□□□□□ -1.31
HERC4-206ENST00000427635 NLRP6P59044 892 aa6.87□□□□□ -1.31
HERC4-206ENST00000427635 ZNF652Q9Y2D9 606 aa6.87□□□□□ -1.31
HERC4-206ENST00000427635 RRP7AQ9Y3A4 280 aaKnown RBP6.87□□□□□ -1.31
HERC4-206ENST00000427635 CLUAP1Q96AJ1 413 aa6.86□□□□□ -1.31
HERC4-206ENST00000427635 API5Q9BZZ5 524 aaKnown RBP6.86□□□□□ -1.31
HERC4-206ENST00000427635 CLEC11AQ9Y240 323 aa6.86□□□□□ -1.31
HERC4-206ENST00000427635 RFX1P22670 979 aa6.86□□□□□ -1.31
HERC4-206ENST00000427635 GRM1Q13255 1194 aa6.85□□□□□ -1.31
HERC4-206ENST00000427635 EXOC8Q8IYI6 725 aa6.85□□□□□ -1.31
HERC4-206ENST00000427635 MPHOSPH8Q99549 860 aa6.85□□□□□ -1.31
HERC4-206ENST00000427635 IRX3P78415 501 aaPredicted RBP6.85□□□□□ -1.31
HERC4-206ENST00000427635 BICD2Q8TD16 824 aa6.85□□□□□ -1.31
HERC4-206ENST00000427635 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.85□□□□□ -1.31
HERC4-206ENST00000427635 ABCC8Q09428 1581 aa6.85□□□□□ -1.31
HERC4-206ENST00000427635 NACAP1Q9BZK3 213 aa6.85□□□□□ -1.31
HERC4-206ENST00000427635 HOMER2Q9NSB8 354 aa6.85□□□□□ -1.31
HERC4-206ENST00000427635 PRDM2Q13029 1718 aa6.84□□□□□ -1.31
HERC4-206ENST00000427635 REC8O95072 547 aa6.84□□□□□ -1.31
HERC4-206ENST00000427635 ZKSCAN2Q63HK3 967 aa6.84□□□□□ -1.31
HERC4-206ENST00000427635 BICDL1Q6ZP65 573 aa6.84□□□□□ -1.31
HERC4-206ENST00000427635 GAS2L2Q8NHY3 880 aa6.84□□□□□ -1.31
HERC4-206ENST00000427635 BEGAINQ9BUH8 593 aa6.84□□□□□ -1.31
HERC4-206ENST00000427635 NEFHP12036 1026 aa6.84□□□□□ -1.31
HERC4-206ENST00000427635 RGS22Q8NE09 1264 aa6.84□□□□□ -1.31
HERC4-206ENST00000427635 ZSCAN25Q6NSZ9 544 aa6.84□□□□□ -1.31
HERC4-206ENST00000427635 VTI1AQ96AJ9 217 aa6.84□□□□□ -1.31
HERC4-206ENST00000427635 POTEJP0CG39 1038 aa6.84□□□□□ -1.32
HERC4-206ENST00000427635 PSMA5P28066 241 aa6.84□□□□□ -1.32
HERC4-206ENST00000427635 SEPT7Q16181 437 aaKnown RBP6.84□□□□□ -1.32
HERC4-206ENST00000427635 EHMT1Q9H9B1 1298 aa6.84□□□□□ -1.32
HERC4-206ENST00000427635 CIZ1Q9ULV3 898 aaPredicted RBP6.84□□□□□ -1.32
HERC4-206ENST00000427635 GRIPAP1Q4V328 841 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 CRACR2BQ8N4Y2 399 aaPredicted RBP6.83□□□□□ -1.32
HERC4-206ENST00000427635 ZHX3Q9H4I2 956 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 PRDM11Q9NQV5 511 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 UBTFL1P0CB47 393 aaPredicted RBP6.83□□□□□ -1.32
HERC4-206ENST00000427635 IGHMBP2P38935 993 aaKnown RBP6.83□□□□□ -1.32
HERC4-206ENST00000427635 NLRP13Q86W25 1043 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 RPGRQ92834 1020 aaKnown RBP6.83□□□□□ -1.32
HERC4-206ENST00000427635 NGLY1Q96IV0 654 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 ACBD3Q9H3P7 528 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 KIF15Q9NS87 1388 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 CCDC30Q5VVM6 783 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 CAGE1Q8TC20 777 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 ERLIN2O94905 339 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 RIPK4P57078 832 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 DCTN1Q14203 1278 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 SASS6Q6UVJ0 657 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 CCDC73Q6ZRK6 1079 aa6.83□□□□□ -1.32
HERC4-206ENST00000427635 POLD1P28340 1107 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 CNTROBQ8N137 903 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 ZNF287Q9HBT7 754 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 HIP1O00291 1037 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 GNAI1P63096 354 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 PABPN1LA6NDY0 278 aaKnown RBP6.82□□□□□ -1.32
HERC4-206ENST00000427635 GOLGA6L3A6NEY3 463 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 NOP2P46087 812 aaKnown RBP6.82□□□□□ -1.32
HERC4-206ENST00000427635 PIP4K2AP48426 406 aaPredicted RBP6.82□□□□□ -1.32
HERC4-206ENST00000427635 NBPF8Q3BBV2 869 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 NBPF14Q5TI25 921 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 CCDC69A6NI79 296 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 CCDC150Q8NCX0 1101 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 DDX11L8A8MPP1 907 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 CCDC57Q2TAC2 916 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 WWC3Q9ULE0 1092 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 SMC3Q9UQE7 1217 aa6.82□□□□□ -1.32
HERC4-206ENST00000427635 PNISRQ8TF01 805 aaKnown RBP6.81□□□□□ -1.32
HERC4-206ENST00000427635 SMARCE1Q969G3 411 aa6.81□□□□□ -1.32
HERC4-206ENST00000427635 MYO1BO43795 1136 aa6.81□□□□□ -1.32
HERC4-206ENST00000427635 STARD3NLO95772 234 aa6.81□□□□□ -1.32
HERC4-206ENST00000427635 FILIP1LQ4L180 1135 aa6.81□□□□□ -1.32
HERC4-206ENST00000427635 FSD1Q9BTV5 496 aa6.81□□□□□ -1.32
HERC4-206ENST00000427635 NAT10Q9H0A0 1025 aaKnown RBP6.81□□□□□ -1.32
HERC4-206ENST00000427635 SLF2Q8IX21 1173 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms