RNA–Protein interactions for RNA: ENST00000427455.1

HERPUD2-205, Transcript of HERPUD family member 2, humanhuman

TSL 3

Gene HERPUD2, Length 672 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-205ENST00000427455 CPSF1Q10570 1443 aaKnown RBP35.2■■■■□ 3.23
HERPUD2-205ENST00000427455 CDCA8Q53HL2 280 aa35.18■■■■□ 3.22
HERPUD2-205ENST00000427455 MON2Q7Z3U7 1717 aa35.18■■■■□ 3.22
HERPUD2-205ENST00000427455 TMC1Q8TDI8 760 aa35.17■■■■□ 3.22
HERPUD2-205ENST00000427455 ZNF692Q9BU19 519 aaPredicted RBP35.17■■■■□ 3.22
HERPUD2-205ENST00000427455 NRKQ7Z2Y5 1582 aa35.17■■■■□ 3.22
HERPUD2-205ENST00000427455 MARF1Q9Y4F3 1742 aaKnown RBP35.16■■■■□ 3.22
HERPUD2-205ENST00000427455 CD163L1Q9NR16 1453 aa35.16■■■■□ 3.22
HERPUD2-205ENST00000427455 CRYBG1Q9Y4K1 1723 aa35.15■■■■□ 3.22
HERPUD2-205ENST00000427455 SSH2Q76I76 1423 aa35.15■■■■□ 3.22
HERPUD2-205ENST00000427455 ADAMTS2O95450 1211 aa35.14■■■■□ 3.22
HERPUD2-205ENST00000427455 KTN1Q86UP2 1357 aaKnown RBP35.13■■■■□ 3.21
HERPUD2-205ENST00000427455 SLC12A5Q9H2X9 1139 aa35.12■■■■□ 3.21
HERPUD2-205ENST00000427455 HAP1P54257 671 aaPredicted RBP35.1■■■■□ 3.21
HERPUD2-205ENST00000427455 CABLES1Q8TDN4 633 aa35.1■■■■□ 3.21
HERPUD2-205ENST00000427455 HDGFL2Q7Z4V5 671 aaPredicted RBP35.09■■■■□ 3.21
HERPUD2-205ENST00000427455 C8orf37Q96NL8 207 aa35.09■■■■□ 3.21
HERPUD2-205ENST00000427455 TERF2IPQ9NYB0 399 aa35.09■■■■□ 3.21
HERPUD2-205ENST00000427455 PHRF1Q9P1Y6 1649 aaKnown RBP35.08■■■■□ 3.21
HERPUD2-205ENST00000427455 ABTB2Q8N961 1025 aa35.08■■■■□ 3.21
HERPUD2-205ENST00000427455 A0A1W2PP64 1363 aa35.08■■■■□ 3.21
HERPUD2-205ENST00000427455 PIK3C2AO00443 1686 aa35.08■■■■□ 3.21
HERPUD2-205ENST00000427455 PLEKHG5O94827 1062 aa35.07■■■■□ 3.2
HERPUD2-205ENST00000427455 RGS17Q9UGC6 210 aaPredicted RBP35.07■■■■□ 3.2
HERPUD2-205ENST00000427455 MYOM1P52179 1685 aa35.07■■■■□ 3.2
HERPUD2-205ENST00000427455 TTC21BQ7Z4L5 1316 aa35.06■■■■□ 3.2
HERPUD2-205ENST00000427455 TTC21AQ8NDW8 1320 aa35.05■■■■□ 3.2
HERPUD2-205ENST00000427455 EDC4Q6P2E9 1401 aaKnown RBP35.04■■■■□ 3.2
HERPUD2-205ENST00000427455 AFF2P51816 1311 aa35.04■■■■□ 3.2
HERPUD2-205ENST00000427455 NUTM2GQ5VZR2 741 aa35.03■■■■□ 3.2
HERPUD2-205ENST00000427455 ANKRD36BQ8N2N9 1353 aa35.02■■■■□ 3.2
HERPUD2-205ENST00000427455 NGLY1Q96IV0 654 aa35.02■■■■□ 3.2
HERPUD2-205ENST00000427455 ZNF772Q68DY9 489 aaPredicted RBP35.01■■■■□ 3.2
HERPUD2-205ENST00000427455 USP19O94966 1318 aa35.01■■■■□ 3.19
HERPUD2-205ENST00000427455 NLRP13Q86W25 1043 aa35■■■■□ 3.19
HERPUD2-205ENST00000427455 FNBP4Q8N3X1 1017 aaPredicted RBP34.96■■■■□ 3.19
HERPUD2-205ENST00000427455 SLIT3O75094 1523 aa34.96■■■■□ 3.19
HERPUD2-205ENST00000427455 NLRP6P59044 892 aa34.95■■■■□ 3.19
HERPUD2-205ENST00000427455 PLCH1Q4KWH8 1693 aa34.95■■■■□ 3.18
HERPUD2-205ENST00000427455 USP54Q70EL1 1684 aa34.95■■■■□ 3.18
HERPUD2-205ENST00000427455 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.94■■■■□ 3.18
HERPUD2-205ENST00000427455 SLIT2O94813 1529 aa34.93■■■■□ 3.18
HERPUD2-205ENST00000427455 COL14A1Q05707 1796 aaKnown RBP34.92■■■■□ 3.18
HERPUD2-205ENST00000427455 POTEAQ6S8J7 498 aa34.92■■■■□ 3.18
HERPUD2-205ENST00000427455 NWD2Q9ULI1 1742 aa34.92■■■■□ 3.18
HERPUD2-205ENST00000427455 POLR3GLQ9BT43 218 aa34.91■■■■□ 3.18
HERPUD2-205ENST00000427455 TNKS1BP1Q9C0C2 1729 aaKnown RBP34.91■■■■□ 3.18
HERPUD2-205ENST00000427455 USP21Q9UK80 565 aa34.9■■■■□ 3.18
HERPUD2-205ENST00000427455 USP31Q70CQ4 1352 aa34.89■■■■□ 3.18
HERPUD2-205ENST00000427455 BCL9LQ86UU0 1499 aa34.89■■■■□ 3.18
HERPUD2-205ENST00000427455 KIAA0232Q92628 1395 aa34.87■■■■□ 3.17
HERPUD2-205ENST00000427455 C11orf95C9JLR9 678 aaPredicted RBP34.87■■■■□ 3.17
HERPUD2-205ENST00000427455 GCP02774 474 aa34.87■■■■□ 3.17
HERPUD2-205ENST00000427455 NME9Q86XW9 330 aa34.87■■■■□ 3.17
HERPUD2-205ENST00000427455 PRDM11Q9NQV5 511 aa34.86■■■■□ 3.17
HERPUD2-205ENST00000427455 CPDO75976 1380 aa34.86■■■■□ 3.17
HERPUD2-205ENST00000427455 FAM83GA6ND36 823 aa34.85■■■■□ 3.17
HERPUD2-205ENST00000427455 ILDR2Q71H61 639 aa34.84■■■■□ 3.17
HERPUD2-205ENST00000427455 OVOS2A0A0J9YW53 1432 aa34.83■■■■□ 3.17
HERPUD2-205ENST00000427455 OVOS2Q6IE36 1432 aa34.83■■■■□ 3.17
HERPUD2-205ENST00000427455 ZC3H6P61129 1189 aaKnown RBP34.83■■■■□ 3.17
HERPUD2-205ENST00000427455 ATRNO75882 1429 aa34.82■■■■□ 3.17
HERPUD2-205ENST00000427455 NRAPQ86VF7 1730 aa34.82■■■■□ 3.16
HERPUD2-205ENST00000427455 KIF7Q2M1P5 1343 aa34.81■■■■□ 3.16
HERPUD2-205ENST00000427455 UNC5CLQ8IV45 518 aa34.81■■■■□ 3.16
HERPUD2-205ENST00000427455 KCNH5Q8NCM2 988 aa34.81■■■■□ 3.16
HERPUD2-205ENST00000427455 QTRT2Q9H974 415 aaKnown RBP34.81■■■■□ 3.16
HERPUD2-205ENST00000427455 TRPC5Q9UL62 973 aaPredicted RBP34.81■■■■□ 3.16
HERPUD2-205ENST00000427455 ZRANB1Q9UGI0 708 aa34.8■■■■□ 3.16
HERPUD2-205ENST00000427455 NFAT5O94916 1531 aa34.8■■■■□ 3.16
HERPUD2-205ENST00000427455 NSD3Q9BZ95 1437 aa34.8■■■■□ 3.16
HERPUD2-205ENST00000427455 KIF20BQ96Q89 1820 aa34.78■■■■□ 3.16
HERPUD2-205ENST00000427455 LMO7Q8WWI1 1683 aa34.77■■■■□ 3.16
HERPUD2-205ENST00000427455 BTG4Q9NY30 223 aa34.77■■■■□ 3.16
HERPUD2-205ENST00000427455 ZEB1P37275 1124 aaPredicted RBP34.76■■■■□ 3.16
HERPUD2-205ENST00000427455 CHRNA2Q15822 529 aa34.76■■■■□ 3.16
HERPUD2-205ENST00000427455 CARD14Q9BXL6 1004 aa34.76■■■■□ 3.16
HERPUD2-205ENST00000427455 RXRBP28702 533 aa34.75■■■■□ 3.15
HERPUD2-205ENST00000427455 RBM6P78332 1123 aaKnown RBP34.73■■■■□ 3.15
HERPUD2-205ENST00000427455 SOX12O15370 315 aa34.72■■■■□ 3.15
HERPUD2-205ENST00000427455 COG3Q96JB2 828 aa34.72■■■■□ 3.15
HERPUD2-205ENST00000427455 CCDC7Q96M83 1385 aa34.72■■■■□ 3.15
HERPUD2-205ENST00000427455 CDK12Q9NYV4 1490 aaPredicted RBP34.71■■■■□ 3.15
HERPUD2-205ENST00000427455 FYB1O15117 783 aa34.7■■■■□ 3.15
HERPUD2-205ENST00000427455 AATKQ6ZMQ8 1374 aa34.7■■■■□ 3.15
HERPUD2-205ENST00000427455 VPS72Q15906 364 aa34.69■■■■□ 3.14
HERPUD2-205ENST00000427455 ARHGEF25Q86VW2 580 aa34.69■■■■□ 3.14
HERPUD2-205ENST00000427455 PANK3Q9H999 370 aa34.69■■■■□ 3.14
HERPUD2-205ENST00000427455 CAMTA1Q9Y6Y1 1673 aa34.69■■■■□ 3.14
HERPUD2-205ENST00000427455 ABCC6O95255 1503 aa34.68■■■■□ 3.14
HERPUD2-205ENST00000427455 COL18A1P39060 1754 aa34.67■■■■□ 3.14
HERPUD2-205ENST00000427455 CGNL1Q0VF96 1302 aa34.67■■■■□ 3.14
HERPUD2-205ENST00000427455 WASHC2AQ641Q2 1341 aa34.67■■■■□ 3.14
HERPUD2-205ENST00000427455 ZBTB7CA1YPR0 619 aa34.67■■■■□ 3.14
HERPUD2-205ENST00000427455 GLI3P10071 1580 aa34.66■■■■□ 3.14
HERPUD2-205ENST00000427455 GJD4Q96KN9 370 aaPredicted RBP34.66■■■■□ 3.14
HERPUD2-205ENST00000427455 GGNBP2Q9H3C7 697 aa34.66■■■■□ 3.14
HERPUD2-205ENST00000427455 LTN1O94822 1766 aa34.66■■■■□ 3.14
HERPUD2-205ENST00000427455 COL5A2P05997 1499 aaPredicted RBP34.64■■■■□ 3.14
HERPUD2-205ENST00000427455 RGS12O14924 1447 aa34.62■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms