RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 CDK19Q9BWU1 502 aa16.69■□□□□ 0.26
SQSTM1-203ENST00000422245 CCDC9Q9Y3X0 531 aaKnown RBP16.69■□□□□ 0.26
SQSTM1-203ENST00000422245 BRWD3Q6RI45 1802 aa16.68■□□□□ 0.26
SQSTM1-203ENST00000422245 CCDC61Q9Y6R9 512 aa16.68■□□□□ 0.26
SQSTM1-203ENST00000422245 CENPJQ9HC77 1338 aaPredicted RBP16.68■□□□□ 0.26
SQSTM1-203ENST00000422245 EP400Q96L91 3159 aa16.67■□□□□ 0.26
SQSTM1-203ENST00000422245 SEPT12Q8IYM1 358 aa16.67■□□□□ 0.26
SQSTM1-203ENST00000422245 PHRF1Q9P1Y6 1649 aaKnown RBP16.67■□□□□ 0.26
SQSTM1-203ENST00000422245 QRICH2Q9H0J4 1663 aa16.65■□□□□ 0.26
SQSTM1-203ENST00000422245 BLMP54132 1417 aaPredicted RBP16.65■□□□□ 0.26
SQSTM1-203ENST00000422245 PLEKHG3A1L390 1219 aa16.65■□□□□ 0.26
SQSTM1-203ENST00000422245 ONECUT3O60422 494 aaPredicted RBP16.65■□□□□ 0.26
SQSTM1-203ENST00000422245 L3MBTL2Q969R5 705 aa16.65■□□□□ 0.26
SQSTM1-203ENST00000422245 PRDM11Q9NQV5 511 aa16.65■□□□□ 0.26
SQSTM1-203ENST00000422245 BTG4Q9NY30 223 aa16.65■□□□□ 0.26
SQSTM1-203ENST00000422245 ACEP12821 1306 aa16.65■□□□□ 0.26
SQSTM1-203ENST00000422245 SRPK2P78362 688 aaKnown RBP16.63■□□□□ 0.25
SQSTM1-203ENST00000422245 TRPM1Q7Z4N2 1603 aa16.63■□□□□ 0.25
SQSTM1-203ENST00000422245 NBPF8Q3BBV2 869 aa16.62■□□□□ 0.25
SQSTM1-203ENST00000422245 KIAA0232Q92628 1395 aa16.62■□□□□ 0.25
SQSTM1-203ENST00000422245 PPIP5K1Q6PFW1 1433 aa16.62■□□□□ 0.25
SQSTM1-203ENST00000422245 KRT27Q7Z3Y8 459 aa16.61■□□□□ 0.25
SQSTM1-203ENST00000422245 BRD4O60885 1362 aaPredicted RBP16.61■□□□□ 0.25
SQSTM1-203ENST00000422245 A0A0G2JS52 829 aa16.6■□□□□ 0.25
SQSTM1-203ENST00000422245 MYT1Q01538 1121 aa16.6■□□□□ 0.25
SQSTM1-203ENST00000422245 SPATA31A5Q5VU36 1347 aa16.6■□□□□ 0.25
SQSTM1-203ENST00000422245 SPATA31A7Q8IWB4 1347 aa16.6■□□□□ 0.25
SQSTM1-203ENST00000422245 NRKQ7Z2Y5 1582 aa16.6■□□□□ 0.25
SQSTM1-203ENST00000422245 FAM98CQ17RN3 349 aaKnown RBP16.59■□□□□ 0.25
SQSTM1-203ENST00000422245 SIN3AQ96ST3 1273 aa16.59■□□□□ 0.25
SQSTM1-203ENST00000422245 ZRANB1Q9UGI0 708 aa16.59■□□□□ 0.25
SQSTM1-203ENST00000422245 USP19O94966 1318 aa16.59■□□□□ 0.25
SQSTM1-203ENST00000422245 ROCK2O75116 1388 aaKnown RBP16.59■□□□□ 0.25
SQSTM1-203ENST00000422245 THSD7AQ9UPZ6 1657 aa16.59■□□□□ 0.25
SQSTM1-203ENST00000422245 SF3B2Q13435 895 aaKnown RBP16.58■□□□□ 0.24
SQSTM1-203ENST00000422245 CABP2Q9NPB3 220 aa16.58■□□□□ 0.24
SQSTM1-203ENST00000422245 NUTM2GQ5VZR2 741 aa16.57■□□□□ 0.24
SQSTM1-203ENST00000422245 ABTB2Q8N961 1025 aa16.57■□□□□ 0.24
SQSTM1-203ENST00000422245 CPDO75976 1380 aa16.56■□□□□ 0.24
SQSTM1-203ENST00000422245 EVC2Q86UK5 1308 aa16.56■□□□□ 0.24
SQSTM1-203ENST00000422245 NEUROD1Q13562 356 aa16.56■□□□□ 0.24
SQSTM1-203ENST00000422245 CHRNA2Q15822 529 aa16.56■□□□□ 0.24
SQSTM1-203ENST00000422245 USP6P35125 1406 aa16.55■□□□□ 0.24
SQSTM1-203ENST00000422245 ZC3H6P61129 1189 aaKnown RBP16.55■□□□□ 0.24
SQSTM1-203ENST00000422245 SSH2Q76I76 1423 aa16.54■□□□□ 0.24
SQSTM1-203ENST00000422245 SPATA31A1Q5TZJ5 1347 aa16.54■□□□□ 0.24
SQSTM1-203ENST00000422245 LMO7Q8WWI1 1683 aa16.54■□□□□ 0.24
SQSTM1-203ENST00000422245 NLRP13Q86W25 1043 aa16.54■□□□□ 0.24
SQSTM1-203ENST00000422245 RGPD1P0DJD0 1748 aa16.53■□□□□ 0.24
SQSTM1-203ENST00000422245 STRN4Q9NRL3 753 aa16.53■□□□□ 0.24
SQSTM1-203ENST00000422245 CABP1Q9NZU7 370 aa16.53■□□□□ 0.24
SQSTM1-203ENST00000422245 DEFB132Q7Z7B7 95 aa16.52■□□□□ 0.24
SQSTM1-203ENST00000422245 CAMTA1Q9Y6Y1 1673 aa16.5■□□□□ 0.23
SQSTM1-203ENST00000422245 GCP02774 474 aa16.5■□□□□ 0.23
SQSTM1-203ENST00000422245 BAG6P46379 1132 aa16.5■□□□□ 0.23
SQSTM1-203ENST00000422245 SBNO2Q9Y2G9 1366 aa16.5■□□□□ 0.23
SQSTM1-203ENST00000422245 SLIT3O75094 1523 aa16.5■□□□□ 0.23
SQSTM1-203ENST00000422245 EVA1CP58658 441 aa16.49■□□□□ 0.23
SQSTM1-203ENST00000422245 BARGINQ6ZT62 677 aa16.49■□□□□ 0.23
SQSTM1-203ENST00000422245 PIK3C2AO00443 1686 aa16.49■□□□□ 0.23
SQSTM1-203ENST00000422245 AKAP12Q02952 1782 aa16.49■□□□□ 0.23
SQSTM1-203ENST00000422245 NLRP6P59044 892 aa16.48■□□□□ 0.23
SQSTM1-203ENST00000422245 TONSLQ96HA7 1378 aa16.48■□□□□ 0.23
SQSTM1-203ENST00000422245 TNS1Q9HBL0 1735 aaKnown RBP16.48■□□□□ 0.23
SQSTM1-203ENST00000422245 DISP2A7MBM2 1401 aa16.47■□□□□ 0.23
SQSTM1-203ENST00000422245 COL5A2P05997 1499 aaPredicted RBP16.47■□□□□ 0.23
SQSTM1-203ENST00000422245 LARP1Q6PKG0 1096 aaKnown RBP16.46■□□□□ 0.23
SQSTM1-203ENST00000422245 TCP11L2Q8N4U5 519 aa16.46■□□□□ 0.23
SQSTM1-203ENST00000422245 ZNF692Q9BU19 519 aaPredicted RBP16.46■□□□□ 0.23
SQSTM1-203ENST00000422245 USP35Q9P2H5 1018 aa16.46■□□□□ 0.23
SQSTM1-203ENST00000422245 AATKQ6ZMQ8 1374 aa16.46■□□□□ 0.23
SQSTM1-203ENST00000422245 FAM196AQ6ZSG2 479 aa16.45■□□□□ 0.22
SQSTM1-203ENST00000422245 CARD11Q9BXL7 1154 aa16.45■□□□□ 0.22
SQSTM1-203ENST00000422245 THRAP3Q9Y2W1 955 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-203ENST00000422245 TTC21AQ8NDW8 1320 aa16.45■□□□□ 0.22
SQSTM1-203ENST00000422245 FAM182BQ5T319 152 aa16.44■□□□□ 0.22
SQSTM1-203ENST00000422245 PARP4Q9UKK3 1724 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-203ENST00000422245 CRB1P82279 1406 aa16.44■□□□□ 0.22
SQSTM1-203ENST00000422245 CPSF1Q10570 1443 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-203ENST00000422245 TTC21BQ7Z4L5 1316 aa16.44■□□□□ 0.22
SQSTM1-203ENST00000422245 MON2Q7Z3U7 1717 aa16.43■□□□□ 0.22
SQSTM1-203ENST00000422245 PDE3BQ13370 1112 aa16.42■□□□□ 0.22
SQSTM1-203ENST00000422245 SRCAPQ6ZRS2 3230 aa16.41■□□□□ 0.22
SQSTM1-203ENST00000422245 LRP5O75197 1615 aa16.41■□□□□ 0.22
SQSTM1-203ENST00000422245 COL18A1P39060 1754 aa16.41■□□□□ 0.22
SQSTM1-203ENST00000422245 KTN1Q86UP2 1357 aaKnown RBP16.41■□□□□ 0.22
SQSTM1-203ENST00000422245 ZBTB7CA1YPR0 619 aa16.41■□□□□ 0.22
SQSTM1-203ENST00000422245 KCNH5Q8NCM2 988 aa16.41■□□□□ 0.22
SQSTM1-203ENST00000422245 PARD3Q8TEW0 1356 aa16.4■□□□□ 0.22
SQSTM1-203ENST00000422245 EN1Q05925 392 aaPredicted RBP16.4■□□□□ 0.22
SQSTM1-203ENST00000422245 ABCC6O95255 1503 aa16.4■□□□□ 0.22
SQSTM1-203ENST00000422245 USP54Q70EL1 1684 aa16.39■□□□□ 0.21
SQSTM1-203ENST00000422245 WNK3Q9BYP7 1800 aa16.38■□□□□ 0.21
SQSTM1-203ENST00000422245 C11orf95C9JLR9 678 aaPredicted RBP16.38■□□□□ 0.21
SQSTM1-203ENST00000422245 TRIM37O94972 964 aa16.38■□□□□ 0.21
SQSTM1-203ENST00000422245 ARHGEF25Q86VW2 580 aa16.38■□□□□ 0.21
SQSTM1-203ENST00000422245 WDR17Q8IZU2 1322 aa16.38■□□□□ 0.21
SQSTM1-203ENST00000422245 LRRC37A3O60309 1634 aa16.37■□□□□ 0.21
SQSTM1-203ENST00000422245 NFAT5O94916 1531 aa16.37■□□□□ 0.21
SQSTM1-203ENST00000422245 TRIM26Q12899 539 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms