RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 PTK7Q13308 1070 aa7.51□□□□□ -1.21
VPS13A-207ENST00000419472 MKRN1Q9UHC7 482 aaKnown RBP7.51□□□□□ -1.21
VPS13A-207ENST00000419472 FAM196BA6NMK8 535 aa7.51□□□□□ -1.21
VPS13A-207ENST00000419472 ZNF211Q13398 564 aaPredicted RBP7.51□□□□□ -1.21
VPS13A-207ENST00000419472 ZNF326Q5BKZ1 582 aaKnown RBP7.51□□□□□ -1.21
VPS13A-207ENST00000419472 SLF2Q8IX21 1173 aa7.51□□□□□ -1.21
VPS13A-207ENST00000419472 C6orf229H3BNL8 230 aa7.5□□□□□ -1.21
VPS13A-207ENST00000419472 GCGRP47871 477 aa7.5□□□□□ -1.21
VPS13A-207ENST00000419472 UBXN4Q92575 508 aa7.5□□□□□ -1.21
VPS13A-207ENST00000419472 CLP1Q92989 425 aaKnown RBP7.5□□□□□ -1.21
VPS13A-207ENST00000419472 ABL1P00519 1130 aa7.49□□□□□ -1.21
VPS13A-207ENST00000419472 RASA1P20936 1047 aa7.49□□□□□ -1.21
VPS13A-207ENST00000419472 IER5LQ5T953 404 aa7.49□□□□□ -1.21
VPS13A-207ENST00000419472 KCNH2Q12809 1159 aa7.49□□□□□ -1.21
VPS13A-207ENST00000419472 NCOA4Q13772 614 aa7.49□□□□□ -1.21
VPS13A-207ENST00000419472 PNMA3Q9UL41 463 aa7.49□□□□□ -1.21
VPS13A-207ENST00000419472 EIF4G1Q04637 1599 aaKnown RBP7.49□□□□□ -1.21
VPS13A-207ENST00000419472 C19orf67A6NJJ6 358 aa7.48□□□□□ -1.21
VPS13A-207ENST00000419472 H3BRB1 525 aa7.48□□□□□ -1.21
VPS13A-207ENST00000419472 SLC10A3P09131 477 aa7.48□□□□□ -1.21
VPS13A-207ENST00000419472 VAMP1P23763 118 aa7.48□□□□□ -1.21
VPS13A-207ENST00000419472 ZNF662Q6ZS27 426 aa7.48□□□□□ -1.21
VPS13A-207ENST00000419472 FAM200AQ8TCP9 573 aa7.48□□□□□ -1.21
VPS13A-207ENST00000419472 KHSRPQ92945 711 aaKnown RBP eCLIP7.48□□□□□ -1.215e-7■■■■□ 19.5
VPS13A-207ENST00000419472 TUT1Q9H6E5 874 aaKnown RBP7.48□□□□□ -1.21
VPS13A-207ENST00000419472 PPP1R3GB7ZBB8 358 aa7.48□□□□□ -1.21
VPS13A-207ENST00000419472 BACH2Q9BYV9 841 aa7.48□□□□□ -1.21
VPS13A-207ENST00000419472 CADPSQ9ULU8 1353 aa7.47□□□□□ -1.21
VPS13A-207ENST00000419472 TATDN2Q93075 761 aa7.47□□□□□ -1.21
VPS13A-207ENST00000419472 ZNF594Q96JF6 807 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-207ENST00000419472 LGR5O75473 907 aa7.47□□□□□ -1.21
VPS13A-207ENST00000419472 USP46P62068 366 aa7.47□□□□□ -1.21
VPS13A-207ENST00000419472 PRMT3O60678 531 aa7.46□□□□□ -1.21
VPS13A-207ENST00000419472 ERCC5P28715 1186 aaPredicted RBP7.46□□□□□ -1.21
VPS13A-207ENST00000419472 NR1H3Q13133 447 aa7.46□□□□□ -1.21
VPS13A-207ENST00000419472 DPYDQ12882 1025 aa7.46□□□□□ -1.22
VPS13A-207ENST00000419472 ASTLQ6HA08 431 aaPredicted RBP7.46□□□□□ -1.22
VPS13A-207ENST00000419472 NUDT7P0C024 238 aa7.45□□□□□ -1.22
VPS13A-207ENST00000419472 MTMR3Q13615 1198 aa7.45□□□□□ -1.22
VPS13A-207ENST00000419472 PLEKHM2Q8IWE5 1019 aa7.45□□□□□ -1.22
VPS13A-207ENST00000419472 CC2D2AQ9P2K1 1620 aa7.45□□□□□ -1.22
VPS13A-207ENST00000419472 MAPK1P28482 360 aa7.45□□□□□ -1.22
VPS13A-207ENST00000419472 DPH6Q7L8W6 267 aa7.45□□□□□ -1.22
VPS13A-207ENST00000419472 ANKMY2Q8IV38 441 aa7.45□□□□□ -1.22
VPS13A-207ENST00000419472 ANKRD62A6NC57 917 aa7.44□□□□□ -1.22
VPS13A-207ENST00000419472 CANXP27824 592 aaKnown RBP7.44□□□□□ -1.22
VPS13A-207ENST00000419472 LARP1Q6PKG0 1096 aaKnown RBP7.44□□□□□ -1.22
VPS13A-207ENST00000419472 PNMA1Q8ND90 353 aa7.44□□□□□ -1.22
VPS13A-207ENST00000419472 DNAJC2Q99543 621 aaKnown RBP7.44□□□□□ -1.22
VPS13A-207ENST00000419472 FUT2Q10981 343 aa7.44□□□□□ -1.22
VPS13A-207ENST00000419472 NFATC2IPQ8NCF5 419 aa7.44□□□□□ -1.22
VPS13A-207ENST00000419472 CLDN10P78369 228 aa7.43□□□□□ -1.22
VPS13A-207ENST00000419472 HDLBPQ00341 1268 aaKnown RBP7.43□□□□□ -1.22
VPS13A-207ENST00000419472 SF3A1Q15459 793 aaKnown RBP7.43□□□□□ -1.22
VPS13A-207ENST00000419472 ECM1Q16610 540 aa7.43□□□□□ -1.22
VPS13A-207ENST00000419472 PRIMPOLQ96LW4 560 aa7.43□□□□□ -1.22
VPS13A-207ENST00000419472 C3orf67Q6ZVT6 689 aa7.42□□□□□ -1.22
VPS13A-207ENST00000419472 ZBBXA8MT70 800 aa7.42□□□□□ -1.22
VPS13A-207ENST00000419472 NBPF26B4DH59 902 aa7.42□□□□□ -1.22
VPS13A-207ENST00000419472 OGFOD1Q8N543 542 aa7.42□□□□□ -1.22
VPS13A-207ENST00000419472 CDCA7Q9BWT1 371 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-207ENST00000419472 SEC24BO95487 1268 aa7.42□□□□□ -1.22
VPS13A-207ENST00000419472 LDLRAD1Q5T700 205 aa7.42□□□□□ -1.22
VPS13A-207ENST00000419472 CAPN12Q6ZSI9 719 aa7.42□□□□□ -1.22
VPS13A-207ENST00000419472 HIRIP3Q9BW71 556 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-207ENST00000419472 POTEFA5A3E0 1075 aa7.41□□□□□ -1.22
VPS13A-207ENST00000419472 GLYCTKQ8IVS8 523 aa7.41□□□□□ -1.22
VPS13A-207ENST00000419472 KIAA1024Q9UPX6 916 aa7.41□□□□□ -1.22
VPS13A-207ENST00000419472 TSGA10IPQ3SY00 556 aa7.41□□□□□ -1.22
VPS13A-207ENST00000419472 FAM161BQ96MY7 647 aa7.41□□□□□ -1.22
VPS13A-207ENST00000419472 ASB16Q96NS5 453 aa7.41□□□□□ -1.22
VPS13A-207ENST00000419472 OCLNQ16625 522 aa7.4□□□□□ -1.22
VPS13A-207ENST00000419472 PROX2Q3B8N5 592 aa7.4□□□□□ -1.22
VPS13A-207ENST00000419472 ANKRD13AQ8IZ07 590 aa7.4□□□□□ -1.22
VPS13A-207ENST00000419472 SEPT3Q9UH03 358 aa7.4□□□□□ -1.22
VPS13A-207ENST00000419472 ICMTO60725 284 aa7.4□□□□□ -1.23
VPS13A-207ENST00000419472 RAD51AP2Q09MP3 1159 aa7.4□□□□□ -1.23
VPS13A-207ENST00000419472 PIK3R5Q8WYR1 880 aa7.4□□□□□ -1.23
VPS13A-207ENST00000419472 ATP5J2-PTCD1G3V325 749 aa7.39□□□□□ -1.23
VPS13A-207ENST00000419472 SWI5Q1ZZU3 235 aa7.39□□□□□ -1.23
VPS13A-207ENST00000419472 MKNK1Q9BUB5 465 aa7.39□□□□□ -1.23
VPS13A-207ENST00000419472 ARHGAP4P98171 946 aa7.39□□□□□ -1.23
VPS13A-207ENST00000419472 PLPP7Q8NBV4 271 aa7.39□□□□□ -1.23
VPS13A-207ENST00000419472 TRIM6-TRIM34B2RNG4 842 aa7.38□□□□□ -1.23
VPS13A-207ENST00000419472 MRPL58Q14197 206 aaKnown RBP7.38□□□□□ -1.23
VPS13A-207ENST00000419472 RNF19AQ9NV58 838 aa7.38□□□□□ -1.23
VPS13A-207ENST00000419472 BRPF3Q9ULD4 1205 aa7.38□□□□□ -1.23
VPS13A-207ENST00000419472 CECR2Q9BXF3 1484 aa7.38□□□□□ -1.23
VPS13A-207ENST00000419472 SWT1Q5T5J6 900 aaKnown RBP7.38□□□□□ -1.23
VPS13A-207ENST00000419472 GAS2L2Q8NHY3 880 aa7.38□□□□□ -1.23
VPS13A-207ENST00000419472 C1orf216Q8TAB5 229 aa7.37□□□□□ -1.23
VPS13A-207ENST00000419472 DHX38Q92620 1227 aaKnown RBP7.37□□□□□ -1.23
VPS13A-207ENST00000419472 TANGO6Q9C0B7 1094 aa7.37□□□□□ -1.23
VPS13A-207ENST00000419472 LNPKQ9C0E8 428 aa7.37□□□□□ -1.23
VPS13A-207ENST00000419472 CEP126Q9P2H0 1117 aa7.37□□□□□ -1.23
VPS13A-207ENST00000419472 DCTN4Q9UJW0 460 aa7.37□□□□□ -1.23
VPS13A-207ENST00000419472 DNMT3AQ9Y6K1 912 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-207ENST00000419472 DKK1O94907 266 aa7.37□□□□□ -1.23
VPS13A-207ENST00000419472 ARSIQ5FYB1 569 aa7.37□□□□□ -1.23
VPS13A-207ENST00000419472 GTF3C2Q8WUA4 911 aaPredicted RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms