RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 LRRC7Q96NW7 1537 aa12.66□□□□□ -0.38
SS18-203ENST00000415083 CDC42BPGQ6DT37 1551 aa12.66□□□□□ -0.38
SS18-203ENST00000415083 STK26Q9P289 416 aa12.66□□□□□ -0.38
SS18-203ENST00000415083 POGKQ9P215 609 aa12.65□□□□□ -0.38
SS18-203ENST00000415083 ALKQ9UM73 1620 aa12.65□□□□□ -0.38
SS18-203ENST00000415083 ZMYM3Q14202 1370 aa12.65□□□□□ -0.38
SS18-203ENST00000415083 RIMBP3CA6NJZ7 1639 aa12.65□□□□□ -0.38
SS18-203ENST00000415083 RIMBP3BA6NNM3 1639 aa12.65□□□□□ -0.38
SS18-203ENST00000415083 RIMBP3Q9UFD9 1639 aa12.65□□□□□ -0.38
SS18-203ENST00000415083 TBC1D2Q9BYX2 928 aa12.65□□□□□ -0.38
SS18-203ENST00000415083 NEO1Q92859 1461 aa12.64□□□□□ -0.39
SS18-203ENST00000415083 MAP2P11137 1827 aaKnown RBP12.64□□□□□ -0.39
SS18-203ENST00000415083 PMFBP1Q8TBY8 1022 aa12.64□□□□□ -0.39
SS18-203ENST00000415083 VGFO15240 615 aaPredicted RBP12.63□□□□□ -0.39
SS18-203ENST00000415083 PRKCSHP14314 528 aaPredicted RBP12.63□□□□□ -0.39
SS18-203ENST00000415083 YTHDC2Q9H6S0 1430 aaKnown RBP12.63□□□□□ -0.39
SS18-203ENST00000415083 FBXO31Q5XUX0 539 aaPredicted RBP12.63□□□□□ -0.39
SS18-203ENST00000415083 MINK1Q8N4C8 1332 aaPredicted RBP12.63□□□□□ -0.39
SS18-203ENST00000415083 DLG5Q8TDM6 1919 aa12.63□□□□□ -0.39
SS18-203ENST00000415083 DZIP1LQ8IYY4 767 aaKnown RBP12.62□□□□□ -0.39
SS18-203ENST00000415083 PRAM1Q96QH2 718 aa12.62□□□□□ -0.39
SS18-203ENST00000415083 SLKQ9H2G2 1235 aaPredicted RBP12.62□□□□□ -0.39
SS18-203ENST00000415083 NOB1Q9ULX3 412 aaKnown RBP12.62□□□□□ -0.39
SS18-203ENST00000415083 ZKSCAN2Q63HK3 967 aa12.62□□□□□ -0.39
SS18-203ENST00000415083 MYH16Q9H6N6 1097 aa12.62□□□□□ -0.39
SS18-203ENST00000415083 TMEM57Q8N5G2 664 aa12.61□□□□□ -0.39
SS18-203ENST00000415083 CFAP53Q96M91 514 aa12.61□□□□□ -0.39
SS18-203ENST00000415083 DAXXQ9UER7 740 aaPredicted RBP12.61□□□□□ -0.39
SS18-203ENST00000415083 KNDC1Q76NI1 1749 aa12.6□□□□□ -0.39
SS18-203ENST00000415083 NRXN3Q9Y4C0 1643 aa12.6□□□□□ -0.39
SS18-203ENST00000415083 U2SURPO15042 1029 aaKnown RBP12.6□□□□□ -0.39
SS18-203ENST00000415083 AAMPQ13685 434 aa12.6□□□□□ -0.39
SS18-203ENST00000415083 ZBTB40Q9NUA8 1239 aa12.6□□□□□ -0.39
SS18-203ENST00000415083 FAM135BQ49AJ0 1406 aa12.6□□□□□ -0.39
SS18-203ENST00000415083 HDAC1Q13547 482 aaPredicted RBP12.6□□□□□ -0.39
SS18-203ENST00000415083 SRPK2P78362 688 aaKnown RBP12.59□□□□□ -0.39
SS18-203ENST00000415083 ATF7IPQ6VMQ6 1270 aa12.59□□□□□ -0.39
SS18-203ENST00000415083 PHACTR3Q96KR7 559 aa12.59□□□□□ -0.39
SS18-203ENST00000415083 SMC4Q9NTJ3 1288 aa12.59□□□□□ -0.39
SS18-203ENST00000415083 SMC5Q8IY18 1101 aa12.59□□□□□ -0.39
SS18-203ENST00000415083 ZNF692Q9BU19 519 aaPredicted RBP12.59□□□□□ -0.39
SS18-203ENST00000415083 RWDD1Q9H446 243 aaPredicted RBP12.59□□□□□ -0.39
SS18-203ENST00000415083 RSPH6AQ9H0K4 717 aa12.58□□□□□ -0.4
SS18-203ENST00000415083 CABP1Q9NZU7 370 aa12.58□□□□□ -0.4
SS18-203ENST00000415083 RIPK4P57078 832 aa12.58□□□□□ -0.4
SS18-203ENST00000415083 CDK19Q9BWU1 502 aa12.57□□□□□ -0.4
SS18-203ENST00000415083 THUMPD2Q9BTF0 503 aaKnown RBP12.57□□□□□ -0.4
SS18-203ENST00000415083 POLKQ9UBT6 870 aa12.57□□□□□ -0.4
SS18-203ENST00000415083 IL16Q14005 1332 aa12.57□□□□□ -0.4
SS18-203ENST00000415083 ZRANB1Q9UGI0 708 aa12.56□□□□□ -0.4
SS18-203ENST00000415083 CT47B1P0C2W7 299 aaPredicted RBP12.56□□□□□ -0.4
SS18-203ENST00000415083 WAPLQ7Z5K2 1190 aa12.56□□□□□ -0.4
SS18-203ENST00000415083 TSPYL6Q8N831 410 aa12.56□□□□□ -0.4
SS18-203ENST00000415083 SPRYD3Q8NCJ5 442 aa12.56□□□□□ -0.4
SS18-203ENST00000415083 ATAD2Q6PL18 1390 aa12.56□□□□□ -0.4
SS18-203ENST00000415083 PPIP5K1Q6PFW1 1433 aa12.56□□□□□ -0.4
SS18-203ENST00000415083 DDIT3P35638 169 aa12.55□□□□□ -0.4
SS18-203ENST00000415083 ITPRIPQ8IWB1 547 aa12.55□□□□□ -0.4
SS18-203ENST00000415083 SLC52A1Q9NWF4 448 aa12.55□□□□□ -0.4
SS18-203ENST00000415083 CPS1P31327 1500 aa12.55□□□□□ -0.4
SS18-203ENST00000415083 SIRT2Q8IXJ6 389 aa12.55□□□□□ -0.4
SS18-203ENST00000415083 NCOA3Q9Y6Q9 1424 aa12.55□□□□□ -0.4
SS18-203ENST00000415083 FTSJ3Q8IY81 847 aaKnown RBP12.55□□□□□ -0.4
SS18-203ENST00000415083 NPM1P06748 294 aaKnown RBP eCLIP12.54□□□□□ -0.4
SS18-203ENST00000415083 KIF2CQ99661 725 aa12.54□□□□□ -0.4
SS18-203ENST00000415083 OSCARQ8IYS5 282 aa12.54□□□□□ -0.4
SS18-203ENST00000415083 NCKAP5LQ9HCH0 1330 aa12.54□□□□□ -0.4
SS18-203ENST00000415083 DIAPH1O60610 1272 aaKnown RBP12.53□□□□□ -0.4
SS18-203ENST00000415083 A2ML1A8K2U0 1454 aa12.53□□□□□ -0.4
SS18-203ENST00000415083 NUCB1Q02818 461 aa12.53□□□□□ -0.4
SS18-203ENST00000415083 MON2Q7Z3U7 1717 aa12.53□□□□□ -0.4
SS18-203ENST00000415083 DLC1Q96QB1 1528 aa12.53□□□□□ -0.4
SS18-203ENST00000415083 C22orf23Q9BZE7 217 aa12.53□□□□□ -0.4
SS18-203ENST00000415083 CPSF1Q10570 1443 aaKnown RBP12.53□□□□□ -0.4
SS18-203ENST00000415083 MFAP1P55081 439 aaKnown RBP12.53□□□□□ -0.4
SS18-203ENST00000415083 PIK3R4Q99570 1358 aa12.52□□□□□ -0.4
SS18-203ENST00000415083 ZBTB7BO15156 539 aaPredicted RBP12.52□□□□□ -0.4
SS18-203ENST00000415083 VAMP4O75379 141 aa12.52□□□□□ -0.4
SS18-203ENST00000415083 PRKAR2BP31323 418 aa12.52□□□□□ -0.4
SS18-203ENST00000415083 DDX19BQ9UMR2 479 aa12.52□□□□□ -0.4
SS18-203ENST00000415083 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.52□□□□□ -0.41
SS18-203ENST00000415083 EMILIN1Q9Y6C2 1016 aa12.52□□□□□ -0.41
SS18-203ENST00000415083 C3P01024 1663 aa12.52□□□□□ -0.41
SS18-203ENST00000415083 CD2BP2O95400 341 aaKnown RBP12.52□□□□□ -0.41
SS18-203ENST00000415083 AKAP12Q02952 1782 aa12.51□□□□□ -0.41
SS18-203ENST00000415083 PTCH1Q13635 1447 aa12.51□□□□□ -0.41
SS18-203ENST00000415083 HMOX1P09601 288 aa12.51□□□□□ -0.41
SS18-203ENST00000415083 ZNF853P0CG23 659 aa12.51□□□□□ -0.41
SS18-203ENST00000415083 MRPL50Q8N5N7 158 aaKnown RBP12.51□□□□□ -0.41
SS18-203ENST00000415083 C1orf115Q9H7X2 142 aa12.51□□□□□ -0.41
SS18-203ENST00000415083 IL13P35225 146 aa12.51□□□□□ -0.41
SS18-203ENST00000415083 BRPF1P55201 1214 aaPredicted RBP12.51□□□□□ -0.41
SS18-203ENST00000415083 TERF2IPQ9NYB0 399 aa12.51□□□□□ -0.41
SS18-203ENST00000415083 ATP7BP35670 1465 aa12.51□□□□□ -0.41
SS18-203ENST00000415083 BECN1Q14457 450 aa12.5□□□□□ -0.41
SS18-203ENST00000415083 SPATA31D1Q6ZQQ2 1576 aa12.5□□□□□ -0.41
SS18-203ENST00000415083 FCHSD2O94868 740 aa12.5□□□□□ -0.41
SS18-203ENST00000415083 LNPKQ9C0E8 428 aa12.5□□□□□ -0.41
SS18-203ENST00000415083 EIF5BO60841 1220 aaKnown RBP12.49□□□□□ -0.41
SS18-203ENST00000415083 ALDH1L2Q3SY69 923 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms